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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SAMM50 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
229.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
146.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
131.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
115.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
113.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
111.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
111.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
110.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
106.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
101.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
94.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
93.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
90.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
87.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
85.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
84.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
83.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
81.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
80.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
78.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
78.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
78.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
77.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
76.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
76.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
73.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
71.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
71.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
71.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
70.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
70.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
70.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
69.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
68.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
67.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
67.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
64.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
64.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
63.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
63.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
62.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
60.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
60.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
60.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
59.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
59.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
59.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
58.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
58.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
57.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
57.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
57.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
57.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
57.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
57.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
56.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
56.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
56.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
55.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
54.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
54.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
54.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
53.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
53.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
53.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
52.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
51.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
51.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
50.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
50.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
50.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
49.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
48.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
47.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
47.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
45.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
45.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
45.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
44.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
44.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
44.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
43.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
43.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
42.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
42.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
41.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
41.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
41.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
40.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
40.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
40.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
40.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
40.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
39.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
39.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
39.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
38.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
37.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
37.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
36.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
36.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
35.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
35.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
35.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
34.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
34.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
34.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
34.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
34.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
33.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
33.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
33.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
32.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
31.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
31.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
31.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
30.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
30.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
28.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
27.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
25.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
24.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SAMM50 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.5
Number of samples
231
Samples
Sample
Description
TPM
DO48719
0 years, male, NA, stage:2, alive, 690 days
127.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
78.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
71.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
70.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
70.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
67.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
66.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
66.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
65.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
63.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
63.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
63.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
61.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
60.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
58.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
57.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
54.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
54.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
53.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
52.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
51.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
51.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
49.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
48.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
47.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
46.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
45.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
44.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
44.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
42.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
40.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
40.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
39.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
38.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
37.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
35.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
33.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
32.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
31.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
31.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.6
925
Tumor
1.2
571
Tumor
1.1
513
Tumor
0.9
615
Tumor
0.9
911
Tumor
0.8
465
Tumor
0.8
1027
Tumor
0.8
227
Tumor
0.7
257
Tumor
0.7
1045
Tumor
0.6
487
Tumor
0.6
745
Tumor
0.6
755
Tumor
0.6
1041
Tumor
0.6
361
Tumor
0.5
231
Tumor
0.5
915
Tumor
0.5
713
Tumor
0.5
785
Tumor
0.5
537
Tumor
0.5
1015
Tumor
0.5
695
Tumor
0.5
477
Tumor
0.5
635
Tumor
0.5
423
Tumor
0.4
483
Tumor
0.4
867
Tumor
0.4
557
Tumor
0.4
137
Tumor
0.4
567
Tumor
0.4
741
Tumor
0.4
515
Tumor
0.4
365
Tumor
0.4
171
Tumor
0.4
411
Tumor
0.4
953
Tumor
0.4
172
Normal
0.3
435
Tumor
0.3
491
Tumor
0.3
981
Tumor
0.3
452
Normal
0.3
937
Tumor
0.3
353
Tumor
0.3
443
Tumor
0.3
313
Tumor
0.3
436
Normal
0.3
746
Normal
0.2
461
Tumor
0.2
123
Tumor
0.2
327
Tumor
0.2
823
Tumor
0.2
393
Tumor
0.2
913
Tumor
0.2
868
Normal
0.2
648
Normal
0.2
923
Tumor
0.2
328
Normal
0.2
1043
Tumor
0.2
261
Tumor
0.2
135
Tumor
0.2
425
Tumor
0.2
563
Tumor
0.2
451
Tumor
0.2
145
Tumor
0.2
481
Tumor
0.2
445
Tumor
0.1
357
Tumor
0.1
641
Tumor
0.1
341
Tumor
0.1
162
Normal
0.1
618
Normal
0.1
873
Tumor
0.1
278
Normal
0.1
141
Tumor
0.1
636
Normal
0.1
786
Normal
0.1
148
Normal
0.1
464
Normal
0.1
955
Tumor
0.1
344
Normal
0.1
462
Normal
0.1
882
Normal
0.1
223
Tumor
0.1
517
Tumor
0.1
214
Normal
0.1
685
Tumor
0.1
864
Normal
0.1
387
Tumor
0.1
432
Normal
0.1
857
Tumor
0.1
914
Normal
0.1
358
Normal
0.1
922
Normal
0.1
356
Normal
0.1
427
Tumor
0.1
756
Normal
0.1
642
Normal
0.1
824
Normal
0.1
874
Normal
0.1
858
Normal
0.1
138
Normal
0.1
912
Normal
0.1
861
Tumor
0.1
448
Normal
0.1
111
Normal
0.1
665
Tumor
0.1
314
Normal
0.1
446
Normal
0.1
777
Tumor
0.1
376
Normal
0.1
866
Normal
0.1
466
Normal
0.1
564
Normal
0.1
468
Normal
0.1
952
Normal
0.1
924
Normal
0.1
697
Tumor
0.1
267
Tumor
0.1
883
Tumor
0.1
395
Tumor
0.1
186
Normal
0.0
716
Normal
0.0
722
Normal
0.0
956
Normal
0.0
484
Normal
0.0
127
Tumor
0.0
982
Normal
0.0
426
Normal
0.0
416
Normal
0.0
113
Tumor
0.0
616
Normal
0.0
534
Normal
0.0
383
Tumor
0.0
662
Normal
0.0
421
Tumor
0.0
128
Normal
0.0
414
Normal
0.0
412
Normal
0.0
342
Normal
0.0
132
Normal
0.0
878
Normal
0.0
147
Tumor
0.0
286
Normal
0.0
422
Normal
0.0
743
Tumor
0.0
218
Normal
0.0
628
Normal
0.0
698
Normal
0.0
538
Normal
0.0
852
Normal
0.0
298
Normal
0.0
195
Tumor
0.0
815
Tumor
0.0
362
Normal
0.0
862
Normal
0.0
368
Normal
0.0
424
Normal
0.0
433
Tumor
0.0
818
Normal
0.0
114
Normal
0.0
738
Normal
0.0
213
Tumor
0.0
617
Tumor
0.0
228
Normal
0.0
1032
Normal
0.0
258
Normal
0.0
714
Normal
0.0
686
Normal
0.0
546
Normal
0.0
1013
Tumor
0.0
816
Normal
0.0
1022
Normal
0.0
297
Tumor
0.0
472
Normal
0.0
473
Tumor
0.0
212
Normal
0.0
884
Normal
0.0
526
Normal
0.0
392
Normal
0.0
428
Normal
0.0
976
Normal
0.0
1014
Normal
0.0
742
Normal
0.0
488
Normal
0.0
1026
Normal
0.0
136
Normal
0.0
262
Normal
0.0
1025
Tumor
0.0
1028
Normal
0.0
474
Normal
0.0
568
Normal
0.0
366
Normal
0.0
966
Normal
0.0
514
Normal
0.0
196
Normal
0.0
456
Normal
0.0
188
Normal
0.0
1016
Normal
-0.1
363
Tumor
-0.1
222
Normal
-0.1
984
Normal
-0.1
161
Tumor
-0.1
364
Normal
-0.1
187
Tumor
-0.1
351
Tumor
-0.1
728
Normal
-0.1
355
Tumor
-0.1
124
Normal
-0.1
232
Normal
-0.1
672
Normal
-0.1
554
Normal
-0.1
664
Normal
-0.1
492
Normal
-0.1
185
Tumor
-0.1
666
Normal
-0.1
944
Normal
-0.1
312
Normal
-0.1
284
Normal
-0.1
146
Normal
-0.1
367
Tumor
-0.1
394
Normal
-0.1
916
Normal
-0.1
696
Normal
-0.1
352
Normal
-0.1
518
Normal
-0.1
126
Normal
-0.1
191
Tumor
-0.1
1046
Normal
-0.1
354
Normal
-0.1
332
Normal
-0.1
964
Normal
-0.1
431
Tumor
-0.1
744
Normal
-0.1
494
Normal
-0.1
938
Normal
-0.1
497
Tumor
-0.1
573
Tumor
-0.1
272
Normal
-0.1
863
Tumor
-0.1
527
Tumor
-0.1
724
Normal
-0.1
954
Normal
-0.1
778
Normal
-0.1
268
Normal
-0.1
574
Normal
-0.1
434
Normal
-0.1
968
Normal
-0.1
647
Tumor
-0.1
1042
Normal
-0.1
663
Tumor
-0.1
224
Normal
-0.1
142
Normal
-0.1
525
Tumor
-0.1
983
Tumor
-0.1
918
Normal
-0.1
493
Tumor
-0.1
388
Normal
-0.1
478
Normal
-0.1
386
Normal
-0.1
813
Tumor
-0.2
727
Tumor
-0.2
723
Tumor
-0.2
516
Normal
-0.2
865
Tumor
-0.2
415
Tumor
-0.2
455
Tumor
-0.2
958
Normal
-0.2
528
Normal
-0.2
391
Tumor
-0.2
926
Normal
-0.2
572
Normal
-0.2
192
Normal
-0.2
535
Tumor
-0.2
671
Tumor
-0.2
444
Normal
-0.2
715
Tumor
-0.2
482
Normal
-0.2
558
Normal
-0.2
271
Tumor
-0.2
536
Normal
-0.2
721
Tumor
-0.2
524
Normal
-0.2
977
Tumor
-0.2
471
Tumor
-0.2
965
Tumor
-0.2
384
Normal
-0.2
1044
Normal
-0.2
978
Normal
-0.2
125
Tumor
-0.2
217
Tumor
-0.2
221
Tumor
-0.2
447
Tumor
-0.2
967
Tumor
-0.3
498
Normal
-0.3
396
Normal
-0.3
277
Tumor
-0.3
553
Tumor
-0.3
285
Tumor
-0.3
921
Tumor
-0.3
737
Tumor
-0.3
533
Tumor
-0.3
1021
Tumor
-0.3
877
Tumor
-0.3
881
Tumor
-0.3
851
Tumor
-0.3
463
Tumor
-0.3
951
Tumor
-0.4
385
Tumor
-0.4
1031
Tumor
-0.4
375
Tumor
-0.4
331
Tumor
-0.4
963
Tumor
-0.4
975
Tumor
-0.4
814
Normal
-0.4
311
Tumor
-0.4
467
Tumor
-0.4
343
Tumor
-0.4
112
Tumor
-0.4
661
Tumor
-0.4
943
Tumor
-0.4
523
Tumor
-0.4
283
Tumor
-0.5
957
Tumor
-0.5
413
Tumor
-0.5
917
Tumor
-0.5
545
Tumor
-0.5
211
Tumor
-0.5
131
Tumor
-0.8
817
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
