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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMP3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
156.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
119.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
113.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
111.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
111.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
108.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
100.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
94.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
86.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
81.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
80.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
78.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
78.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
78.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
78.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
77.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
77.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
74.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
74.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
73.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
72.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
72.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
71.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
71.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
69.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
65.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
65.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
64.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
64.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
63.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
63.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
63.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
62.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
62.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
61.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
59.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
58.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
58.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
58.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
58.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
57.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
57.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
56.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
55.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
55.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
54.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
54.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
54.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
54.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
53.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
53.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
53.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
53.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
52.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
51.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
51.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
51.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
51.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
51.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
50.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
50.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
50.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
50.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
49.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
49.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
48.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
47.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
47.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
46.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
45.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
44.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
44.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
44.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
44.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
43.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
43.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
43.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
41.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
41.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
41.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
41.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
40.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
40.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
40.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
40.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
39.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
39.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
38.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
38.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
38.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
37.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
37.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
37.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
37.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
36.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
36.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
36.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
35.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
34.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
31.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
29.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
28.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
27.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
26.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
26.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.1
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
233.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
146.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
130.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
119.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
111.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
109.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
86.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
85.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
85.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
83.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
80.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
79.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
77.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
77.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
76.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
75.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
74.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
71.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
71.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
70.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
69.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
69.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
68.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
67.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
65.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
64.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
64.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
63.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
62.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
62.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
62.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
61.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
59.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
58.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
56.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
55.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
55.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
55.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
54.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
52.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
51.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
51.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
50.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
50.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
50.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
50.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
50.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
48.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
47.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
47.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
47.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
46.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
46.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
45.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
45.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
42.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
41.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
41.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
40.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
40.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
40.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
40.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
39.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
39.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
38.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
38.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
38.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
37.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
34.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
33.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
31.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
958
Normal
1.9
224
Normal
1.9
354
Normal
1.6
1044
Normal
1.6
862
Normal
1.6
877
Tumor
1.4
516
Normal
1.4
425
Tumor
1.4
185
Tumor
1.3
192
Normal
1.3
355
Tumor
1.1
982
Normal
1.1
938
Normal
1.1
864
Normal
1.0
852
Normal
1.0
1026
Normal
0.9
186
Normal
0.9
524
Normal
0.9
922
Normal
0.9
814
Normal
0.9
1022
Normal
0.9
943
Tumor
0.9
383
Tumor
0.8
976
Normal
0.8
742
Normal
0.8
744
Normal
0.8
124
Normal
0.7
817
Tumor
0.7
716
Normal
0.7
268
Normal
0.7
223
Tumor
0.7
926
Normal
0.7
536
Normal
0.7
494
Normal
0.7
366
Normal
0.7
918
Normal
0.6
954
Normal
0.6
392
Normal
0.6
385
Tumor
0.6
823
Tumor
0.6
284
Normal
0.6
444
Normal
0.5
461
Tumor
0.5
342
Normal
0.5
818
Normal
0.5
816
Normal
0.5
462
Normal
0.5
492
Normal
0.5
671
Tumor
0.5
672
Normal
0.4
394
Normal
0.4
956
Normal
0.4
912
Normal
0.4
228
Normal
0.4
916
Normal
0.4
538
Normal
0.4
558
Normal
0.4
1032
Normal
0.4
298
Normal
0.3
111
Normal
0.3
331
Tumor
0.3
572
Normal
0.3
466
Normal
0.3
452
Normal
0.3
574
Normal
0.3
882
Normal
0.3
723
Tumor
0.3
352
Normal
0.3
474
Normal
0.3
262
Normal
0.3
422
Normal
0.3
564
Normal
0.3
491
Tumor
0.2
478
Normal
0.2
386
Normal
0.2
283
Tumor
0.2
514
Normal
0.2
217
Tumor
0.2
384
Normal
0.2
858
Normal
0.2
141
Tumor
0.2
1042
Normal
0.2
421
Tumor
0.2
388
Normal
0.2
434
Normal
0.2
212
Normal
0.2
917
Tumor
0.2
311
Tumor
0.2
944
Normal
0.1
482
Normal
0.1
142
Normal
0.1
211
Tumor
0.1
618
Normal
0.1
227
Tumor
0.1
698
Normal
0.1
214
Normal
0.1
884
Normal
0.1
314
Normal
0.1
697
Tumor
0.1
636
Normal
0.1
146
Normal
0.1
715
Tumor
0.1
218
Normal
0.1
213
Tumor
0.1
517
Tumor
0.1
883
Tumor
0.1
921
Tumor
0.1
662
Normal
0.1
367
Tumor
0.1
187
Tumor
0.1
344
Normal
0.1
483
Tumor
0.1
161
Tumor
0.1
968
Normal
0.1
978
Normal
0.0
824
Normal
0.0
472
Normal
0.0
868
Normal
0.0
456
Normal
0.0
696
Normal
0.0
428
Normal
0.0
332
Normal
0.0
455
Tumor
0.0
413
Tumor
0.0
1028
Normal
0.0
866
Normal
0.0
286
Normal
0.0
616
Normal
0.0
1045
Tumor
0.0
297
Tumor
0.0
137
Tumor
0.0
537
Tumor
-0.1
448
Normal
-0.1
162
Normal
-0.1
343
Tumor
-0.1
468
Normal
-0.1
135
Tumor
-0.1
722
Normal
-0.1
412
Normal
-0.1
484
Normal
-0.1
966
Normal
-0.1
713
Tumor
-0.1
664
Normal
-0.1
415
Tumor
-0.1
568
Normal
-0.1
375
Tumor
-0.1
738
Normal
-0.1
488
Normal
-0.1
964
Normal
-0.1
686
Normal
-0.1
391
Tumor
-0.1
863
Tumor
-0.1
312
Normal
-0.1
642
Normal
-0.1
433
Tumor
-0.1
756
Normal
-0.2
232
Normal
-0.2
188
Normal
-0.2
368
Normal
-0.2
535
Tumor
-0.2
563
Tumor
-0.2
364
Normal
-0.2
463
Tumor
-0.2
1016
Normal
-0.2
1046
Normal
-0.2
714
Normal
-0.2
528
Normal
-0.2
362
Normal
-0.2
426
Normal
-0.2
647
Tumor
-0.2
728
Normal
-0.2
975
Tumor
-0.2
857
Tumor
-0.2
924
Normal
-0.2
126
Normal
-0.2
416
Normal
-0.2
628
Normal
-0.2
138
Normal
-0.2
554
Normal
-0.2
363
Tumor
-0.2
172
Normal
-0.2
786
Normal
-0.2
666
Normal
-0.2
546
Normal
-0.2
396
Normal
-0.3
518
Normal
-0.3
627
Tumor
-0.3
424
Normal
-0.3
447
Tumor
-0.3
128
Normal
-0.3
545
Tumor
-0.3
148
Normal
-0.3
984
Normal
-0.3
414
Normal
-0.3
464
Normal
-0.3
328
Normal
-0.3
874
Normal
-0.3
1014
Normal
-0.3
914
Normal
-0.3
881
Tumor
-0.3
278
Normal
-0.3
534
Normal
-0.3
471
Tumor
-0.3
493
Tumor
-0.3
571
Tumor
-0.3
114
Normal
-0.3
358
Normal
-0.3
498
Normal
-0.3
665
Tumor
-0.3
356
Normal
-0.4
222
Normal
-0.4
481
Tumor
-0.4
851
Tumor
-0.4
145
Tumor
-0.4
813
Tumor
-0.4
963
Tumor
-0.4
432
Normal
-0.4
967
Tumor
-0.4
132
Normal
-0.5
196
Normal
-0.5
427
Tumor
-0.5
743
Tumor
-0.5
526
Normal
-0.5
387
Tumor
-0.5
436
Normal
-0.5
361
Tumor
-0.5
923
Tumor
-0.5
446
Normal
-0.5
685
Tumor
-0.5
376
Normal
-0.5
785
Tumor
-0.5
913
Tumor
-0.6
527
Tumor
-0.6
1025
Tumor
-0.6
741
Tumor
-0.6
353
Tumor
-0.6
191
Tumor
-0.6
112
Tumor
-0.6
1015
Tumor
-0.6
1041
Tumor
-0.6
815
Tumor
-0.6
272
Normal
-0.6
393
Tumor
-0.6
147
Tumor
-0.6
127
Tumor
-0.6
573
Tumor
-0.7
878
Normal
-0.7
981
Tumor
-0.7
395
Tumor
-0.7
136
Normal
-0.7
365
Tumor
-0.7
925
Tumor
-0.7
952
Normal
-0.7
977
Tumor
-0.7
617
Tumor
-0.7
873
Tumor
-0.7
285
Tumor
-0.7
695
Tumor
-0.7
746
Normal
-0.7
327
Tumor
-0.7
515
Tumor
-0.7
477
Tumor
-0.7
615
Tumor
-0.7
221
Tumor
-0.7
351
Tumor
-0.7
661
Tumor
-0.7
125
Tumor
-0.7
171
Tumor
-0.7
553
Tumor
-0.7
567
Tumor
-0.7
778
Normal
-0.8
721
Tumor
-0.8
525
Tumor
-0.8
467
Tumor
-0.8
745
Tumor
-0.8
195
Tumor
-0.8
341
Tumor
-0.8
965
Tumor
-0.8
1027
Tumor
-0.8
557
Tumor
-0.8
648
Normal
-0.9
443
Tumor
-0.9
423
Tumor
-0.9
277
Tumor
-0.9
635
Tumor
-0.9
271
Tumor
-0.9
953
Tumor
-0.9
915
Tumor
-0.9
258
Normal
-0.9
983
Tumor
-0.9
113
Tumor
-0.9
357
Tumor
-0.9
755
Tumor
-0.9
513
Tumor
-0.9
641
Tumor
-0.9
867
Tumor
-0.9
533
Tumor
-0.9
497
Tumor
-0.9
724
Normal
-1.0
131
Tumor
-1.0
911
Tumor
-1.0
445
Tumor
-1.0
435
Tumor
-1.0
451
Tumor
-1.0
473
Tumor
-1.0
431
Tumor
-1.0
487
Tumor
-1.0
663
Tumor
-1.0
465
Tumor
-1.0
1021
Tumor
-1.1
727
Tumor
-1.1
1031
Tumor
-1.1
777
Tumor
-1.1
523
Tumor
-1.1
313
Tumor
-1.1
411
Tumor
-1.1
957
Tumor
-1.1
865
Tumor
-1.1
737
Tumor
-1.2
261
Tumor
-1.2
861
Tumor
-1.2
123
Tumor
-1.2
937
Tumor
-1.3
1043
Tumor
-1.3
267
Tumor
-1.3
1013
Tumor
-1.3
231
Tumor
-1.4
257
Tumor
-1.5
955
Tumor
-1.6
951
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.