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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIOBP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
169.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
131.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
90.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
80.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
70.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
68.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
67.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
67.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
65.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
65.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
64.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
62.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
62.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
53.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
48.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
47.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
45.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
44.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
44.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
42.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
41.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
40.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
38.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
36.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
35.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
32.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
32.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
31.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
31.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
27.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIOBP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
52.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
40.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
1.2
737
Tumor
1.1
455
Tumor
0.8
536
Normal
0.8
523
Tumor
0.8
813
Tumor
0.8
814
Normal
0.7
635
Tumor
0.7
311
Tumor
0.7
1045
Tumor
0.6
461
Tumor
0.6
916
Normal
0.6
478
Normal
0.6
921
Tumor
0.6
527
Tumor
0.6
443
Tumor
0.5
277
Tumor
0.5
223
Tumor
0.5
917
Tumor
0.5
538
Normal
0.5
492
Normal
0.5
563
Tumor
0.5
192
Normal
0.5
497
Tumor
0.5
937
Tumor
0.5
863
Tumor
0.5
967
Tumor
0.5
473
Tumor
0.4
617
Tumor
0.4
976
Normal
0.4
297
Tumor
0.4
951
Tumor
0.4
415
Tumor
0.4
515
Tumor
0.4
975
Tumor
0.4
498
Normal
0.4
913
Tumor
0.4
918
Normal
0.4
365
Tumor
0.4
545
Tumor
0.4
433
Tumor
0.4
341
Tumor
0.4
958
Normal
0.4
327
Tumor
0.4
778
Normal
0.4
421
Tumor
0.3
524
Normal
0.3
141
Tumor
0.3
513
Tumor
0.3
952
Normal
0.3
955
Tumor
0.3
271
Tumor
0.3
516
Normal
0.3
445
Tumor
0.3
1044
Normal
0.3
344
Normal
0.3
268
Normal
0.3
188
Normal
0.3
728
Normal
0.3
124
Normal
0.3
313
Tumor
0.3
852
Normal
0.3
444
Normal
0.3
477
Tumor
0.3
954
Normal
0.3
714
Normal
0.3
471
Tumor
0.3
386
Normal
0.3
968
Normal
0.3
744
Normal
0.3
924
Normal
0.3
412
Normal
0.3
146
Normal
0.3
865
Tumor
0.3
312
Normal
0.3
554
Normal
0.3
474
Normal
0.3
878
Normal
0.3
785
Tumor
0.3
355
Tumor
0.2
284
Normal
0.2
647
Tumor
0.2
447
Tumor
0.2
224
Normal
0.2
221
Tumor
0.2
866
Normal
0.2
882
Normal
0.2
416
Normal
0.2
528
Normal
0.2
868
Normal
0.2
413
Tumor
0.2
448
Normal
0.2
298
Normal
0.2
494
Normal
0.2
425
Tumor
0.2
672
Normal
0.2
126
Normal
0.2
911
Tumor
0.2
755
Tumor
0.2
162
Normal
0.2
965
Tumor
0.2
977
Tumor
0.2
331
Tumor
0.2
456
Normal
0.2
396
Normal
0.2
925
Tumor
0.2
428
Normal
0.2
956
Normal
0.2
483
Tumor
0.2
743
Tumor
0.2
1028
Normal
0.2
466
Normal
0.2
142
Normal
0.2
818
Normal
0.2
874
Normal
0.2
984
Normal
0.2
816
Normal
0.2
136
Normal
0.2
864
Normal
0.2
943
Tumor
0.2
721
Tumor
0.2
696
Normal
0.2
553
Tumor
0.2
434
Normal
0.2
746
Normal
0.2
488
Normal
0.2
328
Normal
0.2
926
Normal
0.1
966
Normal
0.1
923
Tumor
0.1
686
Normal
0.1
857
Tumor
0.1
518
Normal
0.1
472
Normal
0.1
385
Tumor
0.1
982
Normal
0.1
964
Normal
0.1
695
Tumor
0.1
574
Normal
0.1
185
Tumor
0.1
424
Normal
0.1
481
Tumor
0.1
138
Normal
0.1
394
Normal
0.1
1043
Tumor
0.1
278
Normal
0.1
716
Normal
0.1
944
Normal
0.1
912
Normal
0.1
884
Normal
0.1
212
Normal
0.1
218
Normal
0.1
558
Normal
0.1
392
Normal
0.1
881
Tumor
0.1
546
Normal
0.1
627
Tumor
0.1
514
Normal
0.1
195
Tumor
0.1
938
Normal
0.1
148
Normal
0.1
922
Normal
0.1
493
Tumor
0.1
641
Tumor
0.1
364
Normal
0.1
535
Tumor
0.1
484
Normal
0.1
228
Normal
0.1
616
Normal
0.1
363
Tumor
0.1
422
Normal
0.1
172
Normal
0.1
858
Normal
0.1
491
Tumor
0.1
824
Normal
0.1
423
Tumor
0.1
572
Normal
0.1
738
Normal
0.1
722
Normal
0.1
147
Tumor
0.1
384
Normal
0.1
745
Tumor
0.1
664
Normal
0.1
261
Tumor
0.1
1032
Normal
0.1
756
Normal
0.1
1016
Normal
0.1
187
Tumor
0.1
723
Tumor
0.1
698
Normal
0.1
332
Normal
0.1
462
Normal
0.1
487
Tumor
0.1
786
Normal
0.1
432
Normal
0.1
272
Normal
0.1
111
Normal
0.1
232
Normal
0.1
978
Normal
0.0
662
Normal
0.0
1015
Tumor
0.0
963
Tumor
0.0
526
Normal
0.0
426
Normal
0.0
1046
Normal
0.0
465
Tumor
0.0
482
Normal
0.0
1014
Normal
0.0
823
Tumor
0.0
1026
Normal
0.0
436
Normal
0.0
427
Tumor
0.0
414
Normal
0.0
132
Normal
0.0
534
Normal
0.0
648
Normal
0.0
1042
Normal
0.0
467
Tumor
0.0
395
Tumor
0.0
1022
Normal
0.0
452
Normal
0.0
352
Normal
0.0
137
Tumor
0.0
214
Normal
0.0
873
Tumor
0.0
636
Normal
0.0
356
Normal
0.0
314
Normal
0.0
727
Tumor
0.0
262
Normal
0.0
564
Normal
0.0
383
Tumor
0.0
666
Normal
0.0
883
Tumor
0.0
1041
Tumor
0.0
186
Normal
0.0
285
Tumor
0.0
468
Normal
0.0
376
Normal
0.0
446
Normal
0.0
1021
Tumor
0.0
354
Normal
0.0
628
Normal
0.0
362
Normal
0.0
258
Normal
0.0
862
Normal
0.0
283
Tumor
0.0
713
Tumor
-0.1
286
Normal
-0.1
983
Tumor
-0.1
851
Tumor
-0.1
128
Normal
-0.1
114
Normal
-0.1
915
Tumor
-0.1
642
Normal
-0.1
222
Normal
-0.1
914
Normal
-0.1
1031
Tumor
-0.1
127
Tumor
-0.1
867
Tumor
-0.1
1025
Tumor
-0.1
161
Tumor
-0.1
697
Tumor
-0.1
366
Normal
-0.1
464
Normal
-0.1
112
Tumor
-0.1
388
Normal
-0.1
213
Tumor
-0.1
817
Tumor
-0.1
217
Tumor
-0.1
618
Normal
-0.1
145
Tumor
-0.1
196
Normal
-0.1
368
Normal
-0.1
861
Tumor
-0.1
353
Tumor
-0.1
367
Tumor
-0.1
568
Normal
-0.1
661
Tumor
-0.1
742
Normal
-0.1
342
Normal
-0.1
981
Tumor
-0.1
191
Tumor
-0.2
451
Tumor
-0.2
715
Tumor
-0.2
211
Tumor
-0.2
463
Tumor
-0.2
358
Normal
-0.2
517
Tumor
-0.2
435
Tumor
-0.2
567
Tumor
-0.2
131
Tumor
-0.2
525
Tumor
-0.2
113
Tumor
-0.2
1027
Tumor
-0.2
393
Tumor
-0.2
663
Tumor
-0.2
724
Normal
-0.2
557
Tumor
-0.2
343
Tumor
-0.3
375
Tumor
-0.3
267
Tumor
-0.3
815
Tumor
-0.3
135
Tumor
-0.3
231
Tumor
-0.3
877
Tumor
-0.3
671
Tumor
-0.3
171
Tumor
-0.3
387
Tumor
-0.3
615
Tumor
-0.3
361
Tumor
-0.3
227
Tumor
-0.3
953
Tumor
-0.3
391
Tumor
-0.4
431
Tumor
-0.4
411
Tumor
-0.4
957
Tumor
-0.4
571
Tumor
-0.4
357
Tumor
-0.4
665
Tumor
-0.4
123
Tumor
-0.5
257
Tumor
-0.5
573
Tumor
-0.5
125
Tumor
-0.6
537
Tumor
-0.6
1013
Tumor
-0.6
351
Tumor
-0.6
533
Tumor
-0.7
741
Tumor
-0.7
685
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
