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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HPS4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HPS4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.4
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
65.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
53.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
32.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
953
Tumor
1.1
912
Normal
1.0
1041
Tumor
0.9
786
Normal
0.9
884
Normal
0.9
357
Tumor
0.8
465
Tumor
0.8
537
Tumor
0.8
341
Tumor
0.7
911
Tumor
0.7
742
Normal
0.7
878
Normal
0.6
412
Normal
0.6
1022
Normal
0.6
331
Tumor
0.6
533
Tumor
0.6
222
Normal
0.6
1032
Normal
0.6
648
Normal
0.6
685
Tumor
0.6
746
Normal
0.5
616
Normal
0.5
914
Normal
0.5
1043
Tumor
0.5
1016
Normal
0.5
628
Normal
0.5
452
Normal
0.5
313
Tumor
0.4
756
Normal
0.4
1014
Normal
0.4
553
Tumor
0.4
125
Tumor
0.4
642
Normal
0.4
432
Normal
0.4
695
Tumor
0.4
618
Normal
0.4
1031
Tumor
0.4
1044
Normal
0.3
957
Tumor
0.3
277
Tumor
0.3
883
Tumor
0.3
466
Normal
0.3
851
Tumor
0.3
968
Normal
0.3
554
Normal
0.3
615
Tumor
0.3
477
Tumor
0.3
755
Tumor
0.3
738
Normal
0.3
627
Tumor
0.3
351
Tumor
0.3
146
Normal
0.3
546
Normal
0.3
978
Normal
0.3
1028
Normal
0.3
545
Tumor
0.3
147
Tumor
0.3
641
Tumor
0.3
364
Normal
0.3
218
Normal
0.3
196
Normal
0.3
343
Tumor
0.2
817
Tumor
0.2
785
Tumor
0.2
982
Normal
0.2
491
Tumor
0.2
636
Normal
0.2
647
Tumor
0.2
921
Tumor
0.2
698
Normal
0.2
135
Tumor
0.2
462
Normal
0.2
468
Normal
0.2
448
Normal
0.2
538
Normal
0.2
136
Normal
0.2
443
Tumor
0.2
214
Normal
0.1
723
Tumor
0.1
112
Tumor
0.1
127
Tumor
0.1
138
Normal
0.1
534
Normal
0.1
358
Normal
0.1
743
Tumor
0.1
297
Tumor
0.1
938
Normal
0.1
352
Normal
0.1
367
Tumor
0.1
528
Normal
0.1
416
Normal
0.1
113
Tumor
0.1
741
Tumor
0.1
375
Tumor
0.1
142
Normal
0.1
132
Normal
0.1
882
Normal
0.1
527
Tumor
0.1
434
Normal
0.1
472
Normal
0.0
866
Normal
0.0
1025
Tumor
0.0
124
Normal
0.0
1042
Normal
0.0
145
Tumor
0.0
314
Normal
0.0
483
Tumor
0.0
126
Normal
0.0
865
Tumor
0.0
951
Tumor
0.0
664
Normal
0.0
728
Normal
0.0
421
Tumor
0.0
696
Normal
0.0
1021
Tumor
0.0
185
Tumor
0.0
131
Tumor
0.0
1027
Tumor
0.0
464
Normal
0.0
141
Tumor
0.0
967
Tumor
0.0
487
Tumor
0.0
937
Tumor
0.0
217
Tumor
0.0
617
Tumor
0.0
436
Normal
0.0
114
Normal
0.0
482
Normal
0.0
444
Normal
0.0
915
Tumor
0.0
494
Normal
0.0
958
Normal
0.0
861
Tumor
0.0
984
Normal
0.0
715
Tumor
0.0
498
Normal
0.0
311
Tumor
0.0
744
Normal
-0.1
137
Tumor
-0.1
778
Normal
-0.1
976
Normal
-0.1
111
Normal
-0.1
714
Normal
-0.1
862
Normal
-0.1
128
Normal
-0.1
461
Tumor
-0.1
981
Tumor
-0.1
1026
Normal
-0.1
447
Tumor
-0.1
368
Normal
-0.1
815
Tumor
-0.1
952
Normal
-0.1
721
Tumor
-0.1
925
Tumor
-0.1
686
Normal
-0.1
376
Normal
-0.1
221
Tumor
-0.1
332
Normal
-0.1
383
Tumor
-0.1
492
Normal
-0.1
857
Tumor
-0.1
426
Normal
-0.1
944
Normal
-0.1
415
Tumor
-0.1
975
Tumor
-0.1
474
Normal
-0.1
954
Normal
-0.1
864
Normal
-0.1
446
Normal
-0.1
186
Normal
-0.1
722
Normal
-0.1
312
Normal
-0.2
913
Tumor
-0.2
428
Normal
-0.2
123
Tumor
-0.2
716
Normal
-0.2
422
Normal
-0.2
384
Normal
-0.2
858
Normal
-0.2
481
Tumor
-0.2
192
Normal
-0.2
745
Tumor
-0.2
666
Normal
-0.2
484
Normal
-0.2
195
Tumor
-0.2
414
Normal
-0.2
298
Normal
-0.2
424
Normal
-0.2
493
Tumor
-0.2
451
Tumor
-0.2
488
Normal
-0.2
727
Tumor
-0.2
456
Normal
-0.2
923
Tumor
-0.2
365
Tumor
-0.2
818
Normal
-0.2
187
Tumor
-0.2
874
Normal
-0.2
955
Tumor
-0.2
824
Normal
-0.2
964
Normal
-0.2
344
Normal
-0.2
366
Normal
-0.2
188
Normal
-0.2
816
Normal
-0.2
1046
Normal
-0.2
956
Normal
-0.2
191
Tumor
-0.3
478
Normal
-0.3
473
Tumor
-0.3
427
Tumor
-0.3
868
Normal
-0.3
342
Normal
-0.3
354
Normal
-0.3
662
Normal
-0.3
433
Tumor
-0.3
916
Normal
-0.3
713
Tumor
-0.3
162
Normal
-0.3
877
Tumor
-0.3
1015
Tumor
-0.3
353
Tumor
-0.3
823
Tumor
-0.3
413
Tumor
-0.3
917
Tumor
-0.3
922
Normal
-0.3
635
Tumor
-0.3
943
Tumor
-0.3
867
Tumor
-0.3
926
Normal
-0.3
918
Normal
-0.3
423
Tumor
-0.4
172
Normal
-0.4
966
Normal
-0.4
213
Tumor
-0.4
356
Normal
-0.4
148
Normal
-0.4
171
Tumor
-0.4
536
Normal
-0.4
362
Normal
-0.4
924
Normal
-0.4
471
Tumor
-0.4
873
Tumor
-0.4
672
Normal
-0.4
497
Tumor
-0.5
1045
Tumor
-0.5
663
Tumor
-0.5
977
Tumor
-0.5
852
Normal
-0.5
814
Normal
-0.5
278
Normal
-0.5
965
Tumor
-0.5
435
Tumor
-0.5
425
Tumor
-0.5
161
Tumor
-0.5
863
Tumor
-0.5
665
Tumor
-0.5
963
Tumor
-0.6
445
Tumor
-0.6
697
Tumor
-0.6
777
Tumor
-0.6
361
Tumor
-0.7
724
Normal
-0.7
881
Tumor
-0.7
671
Tumor
-0.7
431
Tumor
-0.7
983
Tumor
-0.8
737
Tumor
-0.8
463
Tumor
-0.8
363
Tumor
-0.8
535
Tumor
-0.9
455
Tumor
-1.0
813
Tumor
-1.0
467
Tumor
-1.0
328
Normal
-1.1
1013
Tumor
-1.1
661
Tumor
-1.1
411
Tumor
-1.3
327
Tumor
-1.3
355
Tumor
-2.0
231
Tumor
N/A
232
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
267
Tumor
N/A
388
Normal
N/A
268
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
574
Normal
N/A
212
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
