MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA Brain:109.2 nTPM
GTEx:14.9 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:72.5 nTPM
Mouse:35.2 nTPM
Allen mouse:8.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 109.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.1
2666 Male, age 74, left hemisphere 230.7
1827 Male, age 72, unknown 99.4
2828 Female, age 72, unknown 96.4
2219 Male, age 76, both hemispheres 81.6
1870 Female, age 42, unknown 67.1
2019 Male, age 18, unknown 58.2
2411 Female, age 72, unknown 42.9
2586 Male, age 75, left hemisphere 38.8
1833 Male, age 53, unknown 33.7
1830 Male, age 51, unknown 32.6
Dorsal raphe nucleus
nTPM: 51.2
2298 Female, age 72, unknown 65.2
2750 Male, age 76, both hemispheres 57.7
2047 Male, age 72, unknown 55.0
1828 Male, age 53, unknown 49.4
2016 Female, age 72, unknown 28.7
Inferior colliculus
nTPM: 48.4
2097 Female, age 72, unknown 56.0
1848 Female, age 42, unknown 51.1
1890 Male, age 53, unknown 44.6
2849 Male, age 72, unknown 41.7
Median raphe nucleus
nTPM: 92.9
2220 Male, age 76, midline 92.9
Periaquaductal grey, anterior
nTPM: 109.2
1795 Male, age 51, unknown 130.6
1947 Male, age 18, unknown 128.0
2502 Female, age 75, unknown 69.1
Periaquaductal grey, dorsal
nTPM: 48.4
1840 Male, age 53, unknown 59.8
2850 Male, age 76, both hemispheres 46.8
1831 Male, age 72, unknown 45.6
2464 Female, age 72, unknown 41.3
Periaquaductal grey, lateral
nTPM: 44.7
2053 Male, age 18, unknown 49.9
2272 Male, age 74, both hemispheres 43.5
2140 Male, age 76, both hemispheres 40.7
Pretectal area
nTPM: 99.2
1816 Male, age 51, unknown 156.9
2667 Female, age 75, unknown 150.5
1817 Female, age 42, unknown 149.4
1944 Female, age 72, unknown 134.8
2007 Male, age 72, unknown 125.5
1815 Male, age 53, unknown 120.3
2224 Female, age 72, unknown 89.8
2825 Male, age 18, unknown 51.7
2316 Male, age 76, right hemisphere 45.3
2407 Male, age 75, both hemispheres 35.1
2273 Male, age 74, both hemispheres 32.2
Red nucleus
nTPM: 23.2
2785 Male, age 18, unknown 58.0
2584 Male, age 75, left hemisphere 38.2
2588 Male, age 74, left hemisphere 24.1
2503 Female, age 72, unknown 21.5
1821 Female, age 72, unknown 20.4
2823 Male, age 76, right hemisphere 20.0
1865 Male, age 51, unknown 19.2
2227 Male, age 72, unknown 16.5
2769 Male, age 72, unknown 16.4
1904 Male, age 53, unknown 16.1
2725 Female, age 75, unknown 14.3
1954 Female, age 42, unknown 14.1
Substantia nigra
nTPM: 73.2
1916 Female, age 42, unknown 108.6
1889 Female, age 72, unknown 105.1
2665 Male, age 74, both hemispheres 91.5
1851 Male, age 51, unknown 86.0
1941 Male, age 53, unknown 84.8
2241 Male, age 72, unknown 73.4
2583 Male, age 75, right hemisphere 66.7
2409 Female, age 72, unknown 62.2
2699 Male, age 18, unknown 32.0
2590 Female, age 75, unknown 21.7
Superior colliculus
nTPM: 86.4
2668 Female, age 75, unknown 268.8
1796 Male, age 53, unknown 114.1
2087 Female, age 72, unknown 99.7
2261 Male, age 18, unknown 74.5
1913 Female, age 42, unknown 60.7
1895 Male, age 76, right hemisphere 58.0
1839 Male, age 51, unknown 55.3
1995 Male, age 72, unknown 51.2
2664 Male, age 75, both hemispheres 44.1
2587 Male, age 74, left hemisphere 37.7
Ventral tegmental area
nTPM: 66.2
2218 Male, age 76, both hemispheres 95.0
1915 Female, age 42, unknown 75.4
2410 Female, age 72, unknown 72.6
1942 Male, age 51, unknown 60.9
2021 Male, age 53, unknown 48.2
2223 Female, age 72, unknown 45.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.9
Samples: 139

Max nTPM: 55.7
Min nTPM: 0.8
Std nTPM: 10.2
Median nTPM: 12.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 55.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 55.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 50.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 44.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 35.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 34.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 32.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 31.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 30.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 29.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 29.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.0
FF:10158-103A5 76 years, female 17.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 72.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.6
Samples: 4

Max nTPM: 75.7
Min nTPM: 19.3
Sample A Female 72.7
Sample B Female 34.7
Sample C Male 75.7
Sample D Male 19.3
Midbrain
nTPM: 64.7
Samples: 4

Max nTPM: 143.7
Min nTPM: 19.7
Sample A Female 19.7
Sample B Female 36.8
Sample C Male 143.7
Sample D Male 58.4
Periaqueductal gray
nTPM: 33.6
Samples: 3

Max nTPM: 36.0
Min nTPM: 31.3
Sample B Female 31.3
Sample C Male 36.0
Sample D Male 33.4
Superior colliculi
nTPM: 72.5
Samples: 4

Max nTPM: 129.4
Min nTPM: 40.1
Sample A Female 56.7
Sample B Female 40.1
Sample C Male 129.4
Sample D Male 63.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 41.5
Min nTPM: 30.5
Sample A Male 30.5
Sample B Male 33.2
Sample C Female 41.5
Sample D Female 35.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
69873600 Antisense, RP_050512_01_F01, Mouse strain C57BL/6J (56 days, male) 8.7
73929583 Antisense, RP_051214_03_G05, Mouse strain C57BL/6J (56 days, male) 8.2

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