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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GGA1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
120.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
59.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
47.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
43.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
38.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
37.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
31.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
28.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GGA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.6
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
98.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
96.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
79.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
78.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
67.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
65.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
61.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
51.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
49.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
46.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
45.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
44.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
42.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
40.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
39.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
37.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
37.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
36.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
36.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
34.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
34.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
331
Tumor
1.1
743
Tumor
1.0
1027
Tumor
0.8
147
Tumor
0.7
965
Tumor
0.7
473
Tumor
0.6
223
Tumor
0.6
921
Tumor
0.6
967
Tumor
0.6
1025
Tumor
0.6
123
Tumor
0.6
851
Tumor
0.5
567
Tumor
0.5
221
Tumor
0.5
285
Tumor
0.5
865
Tumor
0.5
443
Tumor
0.5
641
Tumor
0.5
487
Tumor
0.5
983
Tumor
0.4
553
Tumor
0.4
211
Tumor
0.4
363
Tumor
0.4
471
Tumor
0.4
131
Tumor
0.4
545
Tumor
0.4
951
Tumor
0.4
537
Tumor
0.4
724
Normal
0.4
1021
Tumor
0.3
283
Tumor
0.3
661
Tumor
0.3
361
Tumor
0.3
527
Tumor
0.3
277
Tumor
0.3
925
Tumor
0.3
311
Tumor
0.3
341
Tumor
0.3
271
Tumor
0.3
815
Tumor
0.3
493
Tumor
0.3
385
Tumor
0.3
1043
Tumor
0.3
627
Tumor
0.2
745
Tumor
0.2
1031
Tumor
0.2
367
Tumor
0.2
911
Tumor
0.2
913
Tumor
0.2
727
Tumor
0.2
257
Tumor
0.2
737
Tumor
0.2
463
Tumor
0.2
715
Tumor
0.2
685
Tumor
0.2
975
Tumor
0.2
447
Tumor
0.2
515
Tumor
0.2
697
Tumor
0.2
313
Tumor
0.2
533
Tumor
0.2
513
Tumor
0.2
445
Tumor
0.2
823
Tumor
0.2
943
Tumor
0.2
137
Tumor
0.2
327
Tumor
0.2
141
Tumor
0.2
217
Tumor
0.2
923
Tumor
0.1
647
Tumor
0.1
231
Tumor
0.1
517
Tumor
0.1
483
Tumor
0.1
915
Tumor
0.1
523
Tumor
0.1
124
Normal
0.1
937
Tumor
0.1
977
Tumor
0.1
1045
Tumor
0.1
881
Tumor
0.1
112
Tumor
0.1
536
Normal
0.1
713
Tumor
0.1
665
Tumor
0.1
262
Normal
0.1
953
Tumor
0.1
817
Tumor
0.1
1041
Tumor
0.1
297
Tumor
0.1
857
Tumor
0.1
873
Tumor
0.1
355
Tumor
0.1
883
Tumor
0.1
814
Normal
0.0
964
Normal
0.0
213
Tumor
0.0
535
Tumor
0.0
387
Tumor
0.0
421
Tumor
0.0
481
Tumor
0.0
427
Tumor
0.0
191
Tumor
0.0
498
Normal
0.0
1026
Normal
0.0
136
Normal
0.0
917
Tumor
0.0
867
Tumor
0.0
492
Normal
0.0
976
Normal
0.0
778
Normal
0.0
755
Tumor
0.0
728
Normal
0.0
966
Normal
0.0
554
Normal
0.0
525
Tumor
0.0
357
Tumor
0.0
356
Normal
0.0
952
Normal
0.0
518
Normal
0.0
955
Tumor
0.0
944
Normal
0.0
868
Normal
0.0
224
Normal
0.0
365
Tumor
0.0
663
Tumor
0.0
695
Tumor
0.0
777
Tumor
0.0
145
Tumor
0.0
111
Normal
0.0
272
Normal
0.0
877
Tumor
0.0
298
Normal
0.0
261
Tumor
0.0
497
Tumor
0.0
268
Normal
0.0
538
Normal
0.0
1028
Normal
0.0
212
Normal
0.0
528
Normal
0.0
723
Tumor
0.0
444
Normal
0.0
954
Normal
0.0
464
Normal
0.0
981
Tumor
0.0
1044
Normal
0.0
171
Tumor
0.0
185
Tumor
0.0
671
Tumor
0.0
343
Tumor
-0.1
858
Normal
-0.1
127
Tumor
-0.1
672
Normal
-0.1
384
Normal
-0.1
352
Normal
-0.1
968
Normal
-0.1
413
Tumor
-0.1
524
Normal
-0.1
744
Normal
-0.1
353
Tumor
-0.1
698
Normal
-0.1
328
Normal
-0.1
114
Normal
-0.1
478
Normal
-0.1
635
Tumor
-0.1
916
Normal
-0.1
286
Normal
-0.1
664
Normal
-0.1
461
Tumor
-0.1
218
Normal
-0.1
195
Tumor
-0.1
455
Tumor
-0.1
488
Normal
-0.1
452
Normal
-0.1
958
Normal
-0.1
1022
Normal
-0.1
142
Normal
-0.1
1014
Normal
-0.1
383
Tumor
-0.1
546
Normal
-0.1
126
Normal
-0.1
472
Normal
-0.1
332
Normal
-0.1
258
Normal
-0.1
742
Normal
-0.1
432
Normal
-0.1
666
Normal
-0.1
435
Tumor
-0.1
187
Tumor
-0.1
494
Normal
-0.1
922
Normal
-0.1
526
Normal
-0.1
738
Normal
-0.1
232
Normal
-0.1
477
Tumor
-0.1
785
Tumor
-0.1
882
Normal
-0.1
368
Normal
-0.1
415
Tumor
-0.1
1015
Tumor
-0.1
412
Normal
-0.1
1032
Normal
-0.1
416
Normal
-0.1
642
Normal
-0.1
721
Tumor
-0.1
716
Normal
-0.1
1042
Normal
-0.1
434
Normal
-0.1
364
Normal
-0.1
956
Normal
-0.1
135
Tumor
-0.1
516
Normal
-0.1
188
Normal
-0.1
484
Normal
-0.1
918
Normal
-0.1
756
Normal
-0.1
394
Normal
-0.1
786
Normal
-0.1
813
Tumor
-0.1
192
Normal
-0.1
446
Normal
-0.1
125
Tumor
-0.2
878
Normal
-0.2
448
Normal
-0.2
874
Normal
-0.2
618
Normal
-0.2
982
Normal
-0.2
628
Normal
-0.2
128
Normal
-0.2
391
Tumor
-0.2
824
Normal
-0.2
267
Tumor
-0.2
938
Normal
-0.2
984
Normal
-0.2
196
Normal
-0.2
617
Tumor
-0.2
474
Normal
-0.2
852
Normal
-0.2
284
Normal
-0.2
884
Normal
-0.2
214
Normal
-0.2
228
Normal
-0.2
864
Normal
-0.2
914
Normal
-0.2
534
Normal
-0.2
162
Normal
-0.2
615
Tumor
-0.2
482
Normal
-0.2
662
Normal
-0.2
375
Tumor
-0.2
1046
Normal
-0.2
344
Normal
-0.2
924
Normal
-0.2
514
Normal
-0.2
388
Normal
-0.2
462
Normal
-0.2
138
Normal
-0.2
358
Normal
-0.2
696
Normal
-0.2
351
Tumor
-0.2
392
Normal
-0.2
648
Normal
-0.2
466
Normal
-0.2
866
Normal
-0.2
362
Normal
-0.2
912
Normal
-0.2
148
Normal
-0.2
227
Tumor
-0.2
722
Normal
-0.2
354
Normal
-0.2
451
Tumor
-0.2
146
Normal
-0.2
222
Normal
-0.2
861
Tumor
-0.2
433
Tumor
-0.2
467
Tumor
-0.2
714
Normal
-0.2
862
Normal
-0.2
376
Normal
-0.2
926
Normal
-0.2
573
Tumor
-0.2
395
Tumor
-0.2
436
Normal
-0.3
746
Normal
-0.3
386
Normal
-0.3
278
Normal
-0.3
312
Normal
-0.3
636
Normal
-0.3
1016
Normal
-0.3
686
Normal
-0.3
366
Normal
-0.3
963
Tumor
-0.3
456
Normal
-0.3
563
Tumor
-0.3
574
Normal
-0.3
314
Normal
-0.3
468
Normal
-0.3
426
Normal
-0.3
957
Tumor
-0.3
422
Normal
-0.3
396
Normal
-0.3
393
Tumor
-0.3
186
Normal
-0.3
132
Normal
-0.3
113
Tumor
-0.3
816
Normal
-0.3
465
Tumor
-0.3
342
Normal
-0.3
978
Normal
-0.3
172
Normal
-0.3
424
Normal
-0.3
863
Tumor
-0.3
558
Normal
-0.3
414
Normal
-0.4
411
Tumor
-0.4
818
Normal
-0.4
428
Normal
-0.4
616
Normal
-0.4
564
Normal
-0.4
572
Normal
-0.4
568
Normal
-0.4
423
Tumor
-0.4
557
Tumor
-0.4
491
Tumor
-0.4
741
Tumor
-0.4
431
Tumor
-0.5
571
Tumor
-0.5
425
Tumor
-0.5
161
Tumor
-0.5
1013
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
