MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.1 nTPM
HPA Brain:41.6 nTPM
GTEx:12.1 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:42.0 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.8
2586 Male, age 75, left hemisphere 46.3
2411 Female, age 72, unknown 37.7
2219 Male, age 76, both hemispheres 34.8
1827 Male, age 72, unknown 33.6
2828 Female, age 72, unknown 32.6
1833 Male, age 53, unknown 32.1
1870 Female, age 42, unknown 31.1
1830 Male, age 51, unknown 31.0
2666 Male, age 74, left hemisphere 29.7
2019 Male, age 18, unknown 29.4
Dorsal raphe nucleus
nTPM: 40.1
2047 Male, age 72, unknown 45.0
2298 Female, age 72, unknown 42.4
2750 Male, age 76, both hemispheres 40.2
1828 Male, age 53, unknown 37.7
2016 Female, age 72, unknown 35.1
Inferior colliculus
nTPM: 30.3
2849 Male, age 72, unknown 32.9
1848 Female, age 42, unknown 30.5
1890 Male, age 53, unknown 29.5
2097 Female, age 72, unknown 28.2
Median raphe nucleus
nTPM: 41.6
2220 Male, age 76, midline 41.6
Periaquaductal grey, anterior
nTPM: 37.9
1795 Male, age 51, unknown 39.7
2502 Female, age 75, unknown 38.2
1947 Male, age 18, unknown 35.7
Periaquaductal grey, dorsal
nTPM: 34.0
1840 Male, age 53, unknown 38.0
2464 Female, age 72, unknown 32.8
2850 Male, age 76, both hemispheres 32.8
1831 Male, age 72, unknown 32.4
Periaquaductal grey, lateral
nTPM: 33.5
2272 Male, age 74, both hemispheres 36.0
2053 Male, age 18, unknown 32.3
2140 Male, age 76, both hemispheres 32.3
Pretectal area
nTPM: 30.0
2224 Female, age 72, unknown 36.8
2825 Male, age 18, unknown 34.6
2273 Male, age 74, both hemispheres 32.2
2407 Male, age 75, both hemispheres 31.8
1817 Female, age 42, unknown 30.1
2007 Male, age 72, unknown 29.7
1816 Male, age 51, unknown 27.9
2316 Male, age 76, right hemisphere 27.5
2667 Female, age 75, unknown 26.9
1944 Female, age 72, unknown 26.7
1815 Male, age 53, unknown 26.3
Red nucleus
nTPM: 31.2
2584 Male, age 75, left hemisphere 41.9
2588 Male, age 74, left hemisphere 37.1
2227 Male, age 72, unknown 32.8
2725 Female, age 75, unknown 31.9
2769 Male, age 72, unknown 31.8
2785 Male, age 18, unknown 30.5
1904 Male, age 53, unknown 29.9
1821 Female, age 72, unknown 29.5
2823 Male, age 76, right hemisphere 28.3
2503 Female, age 72, unknown 27.4
1865 Male, age 51, unknown 26.8
1954 Female, age 42, unknown 25.8
Substantia nigra
nTPM: 34.1
1916 Female, age 42, unknown 43.8
2665 Male, age 74, both hemispheres 40.2
2699 Male, age 18, unknown 38.5
1851 Male, age 51, unknown 36.3
2583 Male, age 75, right hemisphere 32.5
1941 Male, age 53, unknown 32.4
2241 Male, age 72, unknown 32.0
2590 Female, age 75, unknown 31.0
1889 Female, age 72, unknown 30.0
2409 Female, age 72, unknown 23.9
Superior colliculus
nTPM: 30.5
2664 Male, age 75, both hemispheres 39.7
2668 Female, age 75, unknown 34.7
1796 Male, age 53, unknown 34.5
1839 Male, age 51, unknown 34.4
2587 Male, age 74, left hemisphere 31.5
2261 Male, age 18, unknown 28.9
2087 Female, age 72, unknown 28.1
1895 Male, age 76, right hemisphere 24.9
1995 Male, age 72, unknown 24.8
1913 Female, age 42, unknown 23.8
Ventral tegmental area
nTPM: 38.0
2223 Female, age 72, unknown 41.3
2021 Male, age 53, unknown 40.6
1942 Male, age 51, unknown 39.0
1915 Female, age 42, unknown 37.0
2218 Male, age 76, both hemispheres 36.8
2410 Female, age 72, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.1
Samples: 139

Max nTPM: 22.3
Min nTPM: 5.9
Std nTPM: 2.8
Median nTPM: 12.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 22.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 20.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 20.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 19.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 18.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 18.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 16.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 16.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 16.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 16.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 15.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.9
FF:10158-103A5 76 years, female 26.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.3
Samples: 4

Max nTPM: 14.4
Min nTPM: 8.6
Sample A Female 14.4
Sample B Female 14.0
Sample C Male 12.2
Sample D Male 8.6
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 18.1
Min nTPM: 11.2
Sample A Female 11.2
Sample B Female 11.2
Sample C Male 18.1
Sample D Male 13.7
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 11.0
Min nTPM: 7.0
Sample B Female 9.6
Sample C Male 11.0
Sample D Male 7.0
Superior colliculi
nTPM: 13.2
Samples: 4

Max nTPM: 14.9
Min nTPM: 11.6
Sample A Female 14.9
Sample B Female 12.1
Sample C Male 14.1
Sample D Male 11.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.0
Samples: 4

Max nTPM: 43.3
Min nTPM: 40.7
Sample A Male 40.7
Sample B Male 40.9
Sample C Female 43.1
Sample D Female 43.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
68845382 Antisense, RP_050224_01_F09, Mouse strain C57BL/6J (56 days, male) 6.2

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