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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RANBP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
69.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
360.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
330.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
291.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
249.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
227.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
220.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
211.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
187.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
170.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
156.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
154.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
154.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
152.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
151.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
144.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
142.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
139.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
138.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
135.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
132.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
131.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
130.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
129.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
129.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
124.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
124.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
124.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
123.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
123.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
120.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
120.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
118.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
117.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
116.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
114.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
112.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
112.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
111.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
111.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
110.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
107.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
107.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
106.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
105.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
104.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
104.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
103.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
103.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
100.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
100.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
100.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
99.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
99.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
99.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
98.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
98.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
98.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
97.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
97.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
96.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
95.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
94.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
94.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
94.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
93.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
93.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
92.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
92.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
92.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
92.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
92.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
91.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
90.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
89.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
89.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
88.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
87.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
85.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
85.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
85.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
85.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
84.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
84.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
84.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
83.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
83.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
83.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
83.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
82.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
82.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
81.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
81.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
81.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
81.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
80.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
79.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
79.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
79.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
79.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
77.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
77.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
77.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
76.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
76.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
76.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
76.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
76.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
76.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
75.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
75.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
74.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
73.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
73.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
73.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
73.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
73.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
73.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
71.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
71.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
71.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
70.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
70.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
70.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
70.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
70.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
70.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
70.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
70.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
69.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
69.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
69.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
68.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
68.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
68.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
67.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
67.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
67.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
67.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
67.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
66.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
66.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
66.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
66.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
66.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
66.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
66.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
65.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
65.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
65.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
65.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
65.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
65.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
64.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
64.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
64.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
63.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
63.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
63.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
63.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
63.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
63.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
63.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
63.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
63.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
63.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
62.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
62.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
61.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
61.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
61.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
61.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
60.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
60.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
60.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
60.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
60.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
60.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
59.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
59.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
59.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
59.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
59.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
59.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
58.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
58.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
58.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
58.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
58.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
58.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
58.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
58.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
57.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
57.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
57.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
57.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
57.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
56.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
56.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
56.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
56.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
56.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
56.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
56.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
56.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
56.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
56.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
55.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
55.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
55.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
55.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
54.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
54.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
54.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
54.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
53.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
53.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
53.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
53.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
53.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
53.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
53.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
53.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
53.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
52.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
52.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
52.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
52.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
52.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
51.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
51.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
51.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
51.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
50.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
50.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
50.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
50.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
50.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
50.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
49.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
49.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
49.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
49.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
49.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
49.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
48.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
48.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
48.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
48.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
48.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
47.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
47.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
47.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
47.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
47.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
47.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
46.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
46.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
46.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
46.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
46.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
46.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
46.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
46.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
45.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
44.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
44.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
44.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
44.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
44.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
43.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
43.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
43.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
43.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
42.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
42.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
42.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
41.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
41.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
41.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
41.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
41.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
40.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
40.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
40.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
40.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
39.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
39.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
39.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
39.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
39.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
39.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
39.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
39.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
38.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
38.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
38.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
38.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
37.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
36.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
36.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
36.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
36.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
36.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
34.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
34.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
34.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
34.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
33.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
32.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
32.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
31.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
30.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
30.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
29.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
22.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
19.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RANBP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
63.8
Number of samples
231
Samples
Sample
Description
TPM
DO23515
0 years, male, NA, stage:2, alive, 1230 days
228.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
208.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
202.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
185.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
183.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
168.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
151.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
149.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
145.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
145.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
144.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
142.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
133.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
130.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
125.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
117.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
117.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
117.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
116.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
115.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
115.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
112.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
111.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
110.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
102.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
100.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
99.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
99.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
99.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
97.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
95.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
94.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
91.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
91.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
90.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
90.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
90.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
89.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
88.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
87.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
87.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
86.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
84.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
84.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
83.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
82.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
82.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
82.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
81.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
81.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
80.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
79.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
79.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
78.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
78.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
78.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
77.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
76.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
75.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
74.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
73.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
73.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
71.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
69.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
69.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
68.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
68.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
68.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
67.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
67.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
67.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
67.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
67.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
66.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
66.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
65.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
65.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
63.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
63.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
62.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
60.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
60.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
60.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
60.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
59.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
59.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
59.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
59.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
59.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
59.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
59.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
58.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
58.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
58.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
57.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
57.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
57.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
57.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
57.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
57.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
57.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
56.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
56.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
56.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
56.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
56.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
55.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
55.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
55.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
55.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
55.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
54.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
54.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
54.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
54.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
53.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
53.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
53.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
53.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
53.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
52.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
52.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
52.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
52.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
52.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
52.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
51.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
51.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
51.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
51.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
50.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
50.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
50.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
50.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
50.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
50.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
49.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
49.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
49.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
49.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
49.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
48.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
48.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
48.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
48.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
47.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
47.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
47.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
47.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
46.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
46.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
45.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
44.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
44.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
43.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
43.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
43.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
42.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
42.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
42.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
42.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
42.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
42.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
42.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
42.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
41.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
41.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
41.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
41.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
41.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
41.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
41.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
41.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
41.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
40.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
39.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
39.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
39.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
39.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
39.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
39.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
38.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
38.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
38.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
36.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
36.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
36.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
36.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
36.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
35.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
35.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
35.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
35.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
32.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
331
Tumor
1.4
351
Tumor
1.2
743
Tumor
1.2
661
Tumor
1.0
361
Tumor
1.0
357
Tumor
0.9
965
Tumor
0.9
983
Tumor
0.9
951
Tumor
0.9
523
Tumor
0.8
313
Tumor
0.8
483
Tumor
0.8
131
Tumor
0.8
285
Tumor
0.7
967
Tumor
0.7
865
Tumor
0.7
953
Tumor
0.7
367
Tumor
0.7
445
Tumor
0.7
497
Tumor
0.7
385
Tumor
0.7
1021
Tumor
0.7
473
Tumor
0.6
465
Tumor
0.6
724
Normal
0.6
537
Tumor
0.6
413
Tumor
0.5
517
Tumor
0.5
567
Tumor
0.5
277
Tumor
0.5
923
Tumor
0.5
283
Tumor
0.5
957
Tumor
0.5
211
Tumor
0.5
727
Tumor
0.5
527
Tumor
0.5
943
Tumor
0.5
261
Tumor
0.5
737
Tumor
0.5
463
Tumor
0.4
387
Tumor
0.4
1013
Tumor
0.4
341
Tumor
0.4
493
Tumor
0.4
815
Tumor
0.4
695
Tumor
0.4
545
Tumor
0.4
147
Tumor
0.4
671
Tumor
0.3
647
Tumor
0.3
161
Tumor
0.3
267
Tumor
0.3
785
Tumor
0.3
435
Tumor
0.3
1015
Tumor
0.3
777
Tumor
0.3
977
Tumor
0.3
535
Tumor
0.2
447
Tumor
0.2
425
Tumor
0.2
877
Tumor
0.2
921
Tumor
0.2
411
Tumor
0.2
477
Tumor
0.2
171
Tumor
0.2
484
Normal
0.2
223
Tumor
0.2
487
Tumor
0.2
1025
Tumor
0.1
355
Tumor
0.1
755
Tumor
0.1
127
Tumor
0.1
1027
Tumor
0.1
981
Tumor
0.1
515
Tumor
0.1
363
Tumor
0.1
1031
Tumor
0.1
427
Tumor
0.1
915
Tumor
0.1
481
Tumor
0.1
513
Tumor
0.1
231
Tumor
0.1
685
Tumor
0.1
924
Normal
0.1
966
Normal
0.1
525
Tumor
0.1
141
Tumor
0.1
911
Tumor
0.1
297
Tumor
0.1
393
Tumor
0.0
922
Normal
0.0
343
Tumor
0.0
498
Normal
0.0
883
Tumor
0.0
478
Normal
0.0
1043
Tumor
0.0
546
Normal
0.0
756
Normal
0.0
365
Tumor
0.0
461
Tumor
0.0
443
Tumor
0.0
863
Tumor
0.0
112
Tumor
0.0
516
Normal
0.0
472
Normal
0.0
271
Tumor
0.0
311
Tumor
0.0
817
Tumor
0.0
975
Tumor
0.0
858
Normal
0.0
257
Tumor
0.0
217
Tumor
0.0
213
Tumor
0.0
635
Tumor
0.0
471
Tumor
0.0
723
Tumor
0.0
937
Tumor
-0.1
926
Normal
-0.1
851
Tumor
-0.1
518
Normal
-0.1
952
Normal
-0.1
715
Tumor
-0.1
824
Normal
-0.1
492
Normal
-0.1
557
Tumor
-0.1
663
Tumor
-0.1
925
Tumor
-0.1
123
Tumor
-0.1
228
Normal
-0.1
342
Normal
-0.1
482
Normal
-0.1
327
Tumor
-0.1
1014
Normal
-0.1
867
Tumor
-0.1
954
Normal
-0.1
488
Normal
-0.1
982
Normal
-0.1
955
Tumor
-0.1
944
Normal
-0.1
433
Tumor
-0.1
573
Tumor
-0.1
938
Normal
-0.1
728
Normal
-0.1
431
Tumor
-0.1
1016
Normal
-0.1
698
Normal
-0.1
745
Tumor
-0.1
746
Normal
-0.1
375
Tumor
-0.1
1045
Tumor
-0.1
538
Normal
-0.1
857
Tumor
-0.1
778
Normal
-0.2
916
Normal
-0.2
963
Tumor
-0.2
816
Normal
-0.2
738
Normal
-0.2
696
Normal
-0.2
391
Tumor
-0.2
818
Normal
-0.2
571
Tumor
-0.2
298
Normal
-0.2
448
Normal
-0.2
494
Normal
-0.2
878
Normal
-0.2
524
Normal
-0.2
862
Normal
-0.2
744
Normal
-0.2
1026
Normal
-0.2
918
Normal
-0.2
917
Tumor
-0.2
536
Normal
-0.2
142
Normal
-0.2
185
Tumor
-0.2
412
Normal
-0.2
665
Tumor
-0.2
881
Tumor
-0.2
423
Tumor
-0.2
956
Normal
-0.2
873
Tumor
-0.2
714
Normal
-0.2
958
Normal
-0.2
866
Normal
-0.2
132
Normal
-0.2
553
Tumor
-0.2
913
Tumor
-0.2
114
Normal
-0.2
534
Normal
-0.2
462
Normal
-0.2
968
Normal
-0.2
474
Normal
-0.2
212
Normal
-0.2
364
Normal
-0.2
284
Normal
-0.2
813
Tumor
-0.3
392
Normal
-0.3
395
Tumor
-0.3
1028
Normal
-0.3
1022
Normal
-0.3
436
Normal
-0.3
533
Tumor
-0.3
1041
Tumor
-0.3
138
Normal
-0.3
554
Normal
-0.3
386
Normal
-0.3
146
Normal
-0.3
128
Normal
-0.3
124
Normal
-0.3
467
Tumor
-0.3
978
Normal
-0.3
814
Normal
-0.3
786
Normal
-0.3
466
Normal
-0.3
716
Normal
-0.3
456
Normal
-0.3
376
Normal
-0.3
914
Normal
-0.3
852
Normal
-0.3
278
Normal
-0.3
882
Normal
-0.3
742
Normal
-0.3
221
Tumor
-0.3
195
Tumor
-0.3
366
Normal
-0.3
451
Tumor
-0.3
984
Normal
-0.3
697
Tumor
-0.3
125
Tumor
-0.3
526
Normal
-0.3
864
Normal
-0.3
332
Normal
-0.3
286
Normal
-0.3
464
Normal
-0.3
186
Normal
-0.3
137
Tumor
-0.3
126
Normal
-0.3
514
Normal
-0.3
272
Normal
-0.3
113
Tumor
-0.3
111
Normal
-0.3
823
Tumor
-0.3
722
Normal
-0.3
434
Normal
-0.3
136
Normal
-0.3
358
Normal
-0.3
383
Tumor
-0.4
615
Tumor
-0.4
964
Normal
-0.4
356
Normal
-0.4
416
Normal
-0.4
188
Normal
-0.4
861
Tumor
-0.4
455
Tumor
-0.4
312
Normal
-0.4
262
Normal
-0.4
491
Tumor
-0.4
224
Normal
-0.4
528
Normal
-0.4
686
Normal
-0.4
976
Normal
-0.4
172
Normal
-0.4
344
Normal
-0.4
452
Normal
-0.4
328
Normal
-0.4
415
Tumor
-0.4
1046
Normal
-0.4
148
Normal
-0.4
222
Normal
-0.4
196
Normal
-0.4
421
Tumor
-0.4
721
Tumor
-0.4
353
Tumor
-0.4
192
Normal
-0.4
232
Normal
-0.4
135
Tumor
-0.4
187
Tumor
-0.4
362
Normal
-0.5
214
Normal
-0.5
1032
Normal
-0.5
145
Tumor
-0.5
162
Normal
-0.5
468
Normal
-0.5
354
Normal
-0.5
394
Normal
-0.5
1044
Normal
-0.5
396
Normal
-0.5
388
Normal
-0.5
422
Normal
-0.5
258
Normal
-0.5
1042
Normal
-0.5
352
Normal
-0.5
868
Normal
-0.5
227
Tumor
-0.5
268
Normal
-0.5
446
Normal
-0.5
314
Normal
-0.5
426
Normal
-0.5
713
Tumor
-0.5
368
Normal
-0.6
563
Tumor
-0.6
912
Normal
-0.6
741
Tumor
-0.6
662
Normal
-0.6
444
Normal
-0.6
218
Normal
-0.6
884
Normal
-0.6
648
Normal
-0.6
642
Normal
-0.6
874
Normal
-0.6
414
Normal
-0.7
568
Normal
-0.7
384
Normal
-0.7
617
Tumor
-0.7
664
Normal
-0.7
641
Tumor
-0.7
432
Normal
-0.7
618
Normal
-0.7
574
Normal
-0.7
572
Normal
-0.7
666
Normal
-0.7
424
Normal
-0.8
428
Normal
-0.8
628
Normal
-0.8
191
Tumor
-0.8
558
Normal
-0.8
564
Normal
-0.8
636
Normal
-0.8
672
Normal
-0.8
616
Normal
-0.9
627
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
