We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMD8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
113.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
315.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
298.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
237.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
235.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
234.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
226.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
218.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
218.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
215.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
214.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
212.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
209.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
206.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
204.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
204.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
199.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
192.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
190.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
189.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
188.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
187.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
185.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
185.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
184.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
177.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
176.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
176.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
169.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
168.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
168.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
167.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
167.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
164.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
164.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
161.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
160.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
160.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
159.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
158.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
158.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
157.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
157.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
157.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
156.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
155.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
155.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
155.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
155.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
155.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
154.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
153.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
153.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
152.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
150.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
150.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
149.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
148.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
146.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
146.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
146.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
145.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
145.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
145.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
144.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
144.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
144.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
144.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
143.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
143.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
143.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
142.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
142.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
141.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
140.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
140.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
138.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
138.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
138.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
137.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
137.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
137.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
136.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
136.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
136.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
135.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
134.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
134.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
134.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
134.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
134.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
133.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
132.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
131.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
131.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
131.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
131.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
130.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
130.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
129.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
129.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
129.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
128.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
128.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
128.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
128.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
126.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
126.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
126.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
126.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
126.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
126.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
125.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
125.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
125.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
124.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
123.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
123.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
123.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
123.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
122.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
122.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
121.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
121.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
121.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
121.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
120.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
120.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
120.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
119.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
119.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
119.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
119.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
119.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
119.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
119.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
118.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
118.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
117.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
117.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
117.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
116.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
116.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
116.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
116.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
115.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
115.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
115.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
114.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
114.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
114.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
114.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
114.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
114.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
113.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
113.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
113.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
113.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
113.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
112.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
112.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
112.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
112.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
112.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
112.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
112.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
112.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
111.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
111.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
111.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
111.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
111.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
110.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
110.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
110.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
110.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
109.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
109.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
108.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
108.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
108.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
107.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
107.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
107.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
107.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
107.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
106.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
106.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
106.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
106.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
105.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
105.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
105.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
105.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
105.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
104.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
103.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
103.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
103.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
103.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
103.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
101.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
101.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
101.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
101.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
100.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
100.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
100.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
100.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
100.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
100.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
99.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
99.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
99.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
99.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
99.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
99.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
99.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
99.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
99.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
99.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
98.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
98.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
97.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
97.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
96.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
96.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
96.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
96.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
96.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
96.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
96.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
95.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
94.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
94.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
94.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
94.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
94.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
94.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
94.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
93.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
93.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
93.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
93.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
92.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
92.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
92.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
92.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
91.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
90.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
90.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
90.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
90.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
90.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
89.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
89.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
89.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
88.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
88.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
88.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
87.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
87.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
87.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
87.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
87.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
87.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
86.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
86.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
85.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
85.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
85.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
85.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
84.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
83.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
83.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
83.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
83.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
83.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
82.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
82.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
82.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
82.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
82.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
81.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
81.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
81.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
81.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
81.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
81.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
80.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
80.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
79.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
79.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
78.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
78.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
78.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
78.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
77.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
77.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
77.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
77.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
77.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
76.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
76.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
76.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
76.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
75.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
74.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
74.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
74.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
73.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
73.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
73.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
72.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
72.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
72.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
70.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
70.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
70.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
70.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
70.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
70.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
69.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
69.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
68.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
67.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
67.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
67.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
67.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
66.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
65.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
65.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
65.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
64.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
63.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
63.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
63.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
62.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
62.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
62.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
61.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
60.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
60.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
59.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
58.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
56.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
56.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
56.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
55.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
54.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
54.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
53.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
53.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
52.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
52.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
50.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
48.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
48.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
46.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
46.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
44.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMD8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
70.1
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
338.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
238.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
163.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
154.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
148.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
148.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
134.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
127.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
125.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
123.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
122.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
119.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
118.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
111.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
110.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
107.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
106.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
106.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
105.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
104.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
104.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
103.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
103.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
103.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
102.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
101.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
100.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
98.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
97.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
97.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
96.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
96.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
94.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
93.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
92.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
92.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
91.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
91.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
91.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
91.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
90.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
90.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
90.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
89.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
88.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
88.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
88.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
88.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
87.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
86.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
86.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
85.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
85.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
85.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
85.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
84.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
84.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
84.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
84.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
83.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
82.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
81.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
81.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
80.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
79.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
79.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
79.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
79.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
78.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
78.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
77.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
76.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
76.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
76.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
75.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
75.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
74.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
74.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
74.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
73.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
73.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
73.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
72.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
72.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
71.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
71.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
71.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
70.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
70.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
70.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
69.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
69.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
69.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
69.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
69.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
68.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
68.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
68.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
68.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
68.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
67.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
67.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
67.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
67.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
67.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
66.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
66.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
65.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
65.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
65.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
65.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
65.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
65.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
64.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
64.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
64.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
64.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
64.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
63.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
63.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
63.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
63.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
63.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
62.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
62.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
61.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
61.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
60.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
60.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
60.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
60.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
60.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
60.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
60.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
59.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
59.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
59.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
59.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
58.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
58.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
58.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
57.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
57.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
57.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
57.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
56.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
56.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
56.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
56.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
55.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
55.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
55.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
55.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
55.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
55.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
54.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
54.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
54.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
54.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
53.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
53.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
53.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
53.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
52.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
52.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
52.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
52.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
52.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
52.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
52.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
51.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
51.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
50.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
50.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
50.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
49.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
49.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
49.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
48.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
48.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
48.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
48.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
48.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
48.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
47.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
46.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
45.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
45.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
45.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
44.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
43.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
43.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
43.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
41.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
41.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
40.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
40.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
40.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
39.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
39.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
38.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
37.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
35.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
35.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
34.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
34.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
0.5
257
Tumor
0.5
724
Normal
0.4
777
Tumor
0.4
1027
Tumor
0.4
147
Tumor
0.4
1021
Tumor
0.4
815
Tumor
0.4
567
Tumor
0.3
1026
Normal
0.3
125
Tumor
0.3
113
Tumor
0.3
755
Tumor
0.3
955
Tumor
0.3
128
Normal
0.3
738
Normal
0.3
1015
Tumor
0.3
911
Tumor
0.3
743
Tumor
0.3
313
Tumor
0.3
353
Tumor
0.2
723
Tumor
0.2
327
Tumor
0.2
351
Tumor
0.2
981
Tumor
0.2
862
Normal
0.2
742
Normal
0.2
616
Normal
0.2
123
Tumor
0.2
851
Tumor
0.2
745
Tumor
0.2
746
Normal
0.2
436
Normal
0.2
1022
Normal
0.2
573
Tumor
0.2
648
Normal
0.2
145
Tumor
0.2
628
Normal
0.2
111
Normal
0.2
663
Tumor
0.2
391
Tumor
0.2
728
Normal
0.2
456
Normal
0.2
864
Normal
0.2
912
Normal
0.2
136
Normal
0.2
953
Tumor
0.2
132
Normal
0.2
141
Tumor
0.2
824
Normal
0.2
756
Normal
0.2
298
Normal
0.2
342
Normal
0.2
272
Normal
0.2
983
Tumor
0.2
713
Tumor
0.2
186
Normal
0.2
786
Normal
0.2
618
Normal
0.2
462
Normal
0.2
466
Normal
0.2
647
Tumor
0.2
162
Normal
0.2
727
Tumor
0.2
114
Normal
0.2
314
Normal
0.2
341
Tumor
0.2
617
Tumor
0.2
278
Normal
0.2
514
Normal
0.2
356
Normal
0.2
451
Tumor
0.2
868
Normal
0.2
188
Normal
0.2
172
Normal
0.1
452
Normal
0.1
913
Tumor
0.1
952
Normal
0.1
571
Tumor
0.1
944
Normal
0.1
513
Tumor
0.1
223
Tumor
0.1
627
Tumor
0.1
661
Tumor
0.1
1028
Normal
0.1
148
Normal
0.1
914
Normal
0.1
816
Normal
0.1
557
Tumor
0.1
312
Normal
0.1
722
Normal
0.1
714
Normal
0.1
414
Normal
0.1
525
Tumor
0.1
925
Tumor
0.1
857
Tumor
0.1
227
Tumor
0.1
284
Normal
0.1
564
Normal
0.1
664
Normal
0.1
286
Normal
0.1
258
Normal
0.1
463
Tumor
0.1
642
Normal
0.1
232
Normal
0.1
435
Tumor
0.1
956
Normal
0.1
395
Tumor
0.1
262
Normal
0.1
138
Normal
0.1
455
Tumor
0.1
884
Normal
0.1
882
Normal
0.1
358
Normal
0.1
938
Normal
0.1
261
Tumor
0.1
515
Tumor
0.1
818
Normal
0.1
517
Tumor
0.1
387
Tumor
0.1
416
Normal
0.1
171
Tumor
0.1
267
Tumor
0.1
126
Normal
0.1
137
Tumor
0.1
127
Tumor
0.1
526
Normal
0.1
112
Tumor
0.1
866
Normal
0.1
432
Normal
0.1
858
Normal
0.1
696
Normal
0.1
424
Normal
0.1
1016
Normal
0.1
448
Normal
0.1
721
Tumor
0.1
423
Tumor
0.1
396
Normal
0.1
1025
Tumor
0.1
874
Normal
0.1
1042
Normal
0.1
285
Tumor
0.1
518
Normal
0.1
388
Normal
0.1
357
Tumor
0.1
666
Normal
0.1
421
Tumor
0.1
1043
Tumor
0.1
196
Normal
0.1
698
Normal
0.1
366
Normal
0.1
365
Tumor
0.1
863
Tumor
0.1
468
Normal
0.1
662
Normal
0.1
951
Tumor
0.1
411
Tumor
0.1
1044
Normal
0.1
332
Normal
0.1
1032
Normal
0.1
671
Tumor
0.1
367
Tumor
0.1
297
Tumor
0.1
482
Normal
0.1
368
Normal
0.1
214
Normal
0.1
386
Normal
0.1
394
Normal
0.1
328
Normal
0.1
446
Normal
0.1
426
Normal
0.1
185
Tumor
0.1
464
Normal
0.1
852
Normal
0.1
376
Normal
0.1
445
Tumor
0.0
228
Normal
0.0
474
Normal
0.0
494
Normal
0.0
558
Normal
0.0
615
Tumor
0.0
484
Normal
0.0
665
Tumor
0.0
1031
Tumor
0.0
922
Normal
0.0
222
Normal
0.0
221
Tumor
0.0
146
Normal
0.0
873
Tumor
0.0
422
Normal
0.0
1046
Normal
0.0
778
Normal
0.0
425
Tumor
0.0
412
Normal
0.0
937
Tumor
0.0
427
Tumor
0.0
563
Tumor
0.0
124
Normal
0.0
361
Tumor
0.0
465
Tumor
0.0
392
Normal
0.0
271
Tumor
0.0
867
Tumor
0.0
943
Tumor
0.0
142
Normal
0.0
528
Normal
0.0
413
Tumor
0.0
635
Tumor
0.0
574
Normal
0.0
461
Tumor
0.0
877
Tumor
0.0
924
Normal
0.0
878
Normal
0.0
964
Normal
0.0
212
Normal
0.0
362
Normal
0.0
926
Normal
0.0
861
Tumor
0.0
477
Tumor
0.0
344
Normal
0.0
434
Normal
0.0
472
Normal
0.0
135
Tumor
0.0
393
Tumor
0.0
385
Tumor
0.0
883
Tumor
0.0
1045
Tumor
0.0
966
Normal
0.0
218
Normal
0.0
568
Normal
0.0
433
Tumor
0.0
978
Normal
0.0
534
Normal
0.0
546
Normal
0.0
428
Normal
0.0
364
Normal
0.0
268
Normal
0.0
487
Tumor
0.0
283
Tumor
0.0
685
Tumor
0.0
572
Normal
0.0
918
Normal
0.0
231
Tumor
0.0
641
Tumor
0.0
213
Tumor
0.0
982
Normal
0.0
187
Tumor
0.0
881
Tumor
0.0
1014
Normal
0.0
977
Tumor
0.0
814
Normal
0.0
813
Tumor
0.0
481
Tumor
0.0
491
Tumor
0.0
817
Tumor
0.0
716
Normal
0.0
865
Tumor
0.0
343
Tumor
0.0
967
Tumor
-0.1
224
Normal
-0.1
636
Normal
-0.1
695
Tumor
-0.1
744
Normal
-0.1
968
Normal
-0.1
923
Tumor
-0.1
523
Tumor
-0.1
277
Tumor
-0.1
715
Tumor
-0.1
686
Normal
-0.1
443
Tumor
-0.1
516
Normal
-0.1
471
Tumor
-0.1
375
Tumor
-0.1
488
Normal
-0.1
467
Tumor
-0.1
537
Tumor
-0.1
352
Normal
-0.1
195
Tumor
-0.1
1041
Tumor
-0.1
976
Normal
-0.1
311
Tumor
-0.1
161
Tumor
-0.1
954
Normal
-0.1
384
Normal
-0.1
1013
Tumor
-0.1
524
Normal
-0.1
527
Tumor
-0.1
383
Tumor
-0.1
192
Normal
-0.1
916
Normal
-0.1
697
Tumor
-0.1
217
Tumor
-0.1
957
Tumor
-0.1
915
Tumor
-0.1
984
Normal
-0.1
363
Tumor
-0.1
354
Normal
-0.1
785
Tumor
-0.1
478
Normal
-0.1
191
Tumor
-0.2
444
Normal
-0.2
447
Tumor
-0.2
331
Tumor
-0.2
131
Tumor
-0.2
921
Tumor
-0.2
431
Tumor
-0.2
672
Normal
-0.2
554
Normal
-0.2
533
Tumor
-0.2
958
Normal
-0.2
415
Tumor
-0.2
497
Tumor
-0.2
963
Tumor
-0.2
737
Tumor
-0.2
965
Tumor
-0.2
355
Tumor
-0.2
917
Tumor
-0.3
492
Normal
-0.3
498
Normal
-0.3
483
Tumor
-0.3
975
Tumor
-0.3
536
Normal
-0.3
823
Tumor
-0.3
535
Tumor
-0.3
538
Normal
-0.3
553
Tumor
-0.4
493
Tumor
-0.4
473
Tumor
-0.4
211
Tumor
-0.4
545
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.