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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
347.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2903.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2671.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1956.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1776.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1760.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1688.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1683.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1655.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1647.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1627.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1582.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1539.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1489.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1409.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1400.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1372.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1331.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1261.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1257.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1247.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1232.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1197.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1144.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1120.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1079.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1065.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1056.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1023.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1011.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
920.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
892.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
883.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
879.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
870.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
840.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
837.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
818.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
766.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
738.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
734.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
731.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
720.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
707.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
695.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
687.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
686.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
684.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
682.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
659.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
655.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
641.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
641.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
636.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
618.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
598.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
593.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
585.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
583.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
581.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
573.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
571.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
562.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
561.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
559.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
549.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
544.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
539.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
534.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
532.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
531.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
531.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
525.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
514.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
500.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
499.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
492.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
486.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
479.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
478.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
475.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
468.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
468.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
465.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
456.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
446.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
445.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
444.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
442.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
441.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
438.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
435.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
432.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
428.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
422.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
421.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
420.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
418.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
413.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
409.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
408.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
402.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
400.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
397.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
396.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
394.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
393.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
385.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
383.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
383.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
380.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
377.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
377.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
376.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
371.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
367.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
366.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
366.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
364.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
364.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
357.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
351.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
350.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
346.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
341.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
335.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
327.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
327.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
326.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
321.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
320.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
319.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
318.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
316.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
314.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
313.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
313.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
312.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
311.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
309.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
308.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
307.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
305.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
304.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
302.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
301.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
288.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
284.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
284.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
282.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
274.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
273.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
272.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
270.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
268.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
262.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
260.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
259.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
258.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
258.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
255.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
254.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
250.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
247.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
247.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
246.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
243.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
241.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
237.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
236.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
232.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
230.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
226.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
222.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
221.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
220.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
218.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
217.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
215.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
215.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
208.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
207.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
206.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
206.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
204.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
204.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
202.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
201.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
200.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
199.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
199.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
196.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
194.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
193.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
193.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
193.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
189.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
186.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
184.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
179.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
178.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
176.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
176.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
174.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
172.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
172.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
172.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
167.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
166.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
165.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
165.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
164.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
164.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
160.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
160.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
156.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
156.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
152.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
151.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
148.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
148.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
148.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
147.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
146.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
146.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
144.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
143.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
142.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
139.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
139.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
139.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
138.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
137.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
136.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
135.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
134.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
134.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
132.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
129.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
128.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
126.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
126.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
126.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
124.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
123.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
121.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
120.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
118.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
116.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
115.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
112.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
111.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
111.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
108.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
107.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
105.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
104.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
100.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
98.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
98.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
97.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
96.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
95.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
94.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
93.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
92.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
91.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
91.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
90.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
88.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
88.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
87.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
86.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
84.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
84.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
84.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
83.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
79.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
78.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
78.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
77.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
76.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
76.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
75.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
73.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
70.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
70.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
69.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
68.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
68.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
67.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
66.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
65.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
64.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
63.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
62.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
62.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
59.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
59.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
55.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
52.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
51.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
50.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
49.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
49.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
48.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
45.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
45.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
43.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
40.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
40.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
39.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
33.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
33.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
32.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
32.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
28.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
350.5
Number of samples
231
Samples
Sample
Description
TPM
DO48751
0 years, male, NA, stage:2, dead, 480 days
3102.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2652.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
2125.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
1944.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
1766.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1758.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
1416.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
1343.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
1339.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
1338.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
1329.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
1265.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
1145.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
1130.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1080.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
1076.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
1060.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1001.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
992.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
967.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
947.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
942.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
924.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
897.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
870.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
861.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
857.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
853.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
789.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
773.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
704.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
701.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
701.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
681.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
678.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
674.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
662.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
631.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
607.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
607.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
604.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
565.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
554.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
546.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
546.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
543.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
542.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
541.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
540.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
537.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
534.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
521.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
517.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
503.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
502.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
487.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
484.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
483.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
483.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
481.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
480.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
477.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
462.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
454.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
434.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
428.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
415.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
410.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
406.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
400.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
395.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
379.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
376.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
375.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
370.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
368.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
362.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
361.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
350.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
344.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
336.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
329.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
325.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
324.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
317.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
308.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
287.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
277.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
270.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
269.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
258.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
253.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
251.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
248.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
248.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
245.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
244.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
241.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
239.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
236.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
234.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
232.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
231.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
230.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
224.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
224.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
221.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
219.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
210.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
206.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
201.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
200.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
195.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
192.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
187.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
184.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
183.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
180.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
177.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
172.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
172.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
165.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
165.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
161.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
160.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
159.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
159.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
158.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
158.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
157.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
147.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
143.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
143.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
141.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
131.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
130.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
122.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
122.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
120.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
116.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
114.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
111.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
110.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
107.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
106.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
106.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
105.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
104.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
101.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
101.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
99.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
98.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
94.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
93.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
89.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
88.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
82.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
82.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
80.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
79.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
79.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
77.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
75.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
74.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
73.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
71.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
70.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
70.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
64.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
63.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
62.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
62.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
61.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
60.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
60.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
56.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
56.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
55.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
54.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
52.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
50.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
49.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
49.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
47.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
46.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
45.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
45.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
44.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
44.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
43.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
40.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
39.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
2.9
387
Tumor
2.4
567
Tumor
2.3
537
Tumor
2.3
1043
Tumor
2.2
617
Tumor
2.1
477
Tumor
2.0
391
Tumor
1.8
951
Tumor
1.7
883
Tumor
1.6
983
Tumor
1.5
965
Tumor
1.5
187
Tumor
1.5
267
Tumor
1.4
517
Tumor
1.4
112
Tumor
1.4
533
Tumor
1.3
817
Tumor
1.3
421
Tumor
1.2
1025
Tumor
1.2
685
Tumor
1.1
367
Tumor
1.1
435
Tumor
1.1
815
Tumor
1.1
361
Tumor
1.1
473
Tumor
1.1
851
Tumor
1.1
743
Tumor
1.1
455
Tumor
1.0
451
Tumor
1.0
257
Tumor
0.9
861
Tumor
0.9
413
Tumor
0.9
1021
Tumor
0.9
227
Tumor
0.9
957
Tumor
0.9
147
Tumor
0.9
127
Tumor
0.8
921
Tumor
0.8
223
Tumor
0.8
573
Tumor
0.7
1027
Tumor
0.7
967
Tumor
0.7
285
Tumor
0.7
1041
Tumor
0.7
745
Tumor
0.7
755
Tumor
0.7
231
Tumor
0.7
145
Tumor
0.7
557
Tumor
0.6
563
Tumor
0.6
671
Tumor
0.6
813
Tumor
0.5
161
Tumor
0.5
171
Tumor
0.5
915
Tumor
0.5
113
Tumor
0.5
535
Tumor
0.4
355
Tumor
0.4
925
Tumor
0.4
715
Tumor
0.4
443
Tumor
0.4
431
Tumor
0.4
568
Normal
0.4
497
Tumor
0.3
425
Tumor
0.3
635
Tumor
0.3
523
Tumor
0.3
385
Tumor
0.3
331
Tumor
0.2
272
Normal
0.2
471
Tumor
0.2
975
Tumor
0.1
641
Tumor
0.1
191
Tumor
0.1
388
Normal
0.1
923
Tumor
0.1
724
Normal
0.1
865
Tumor
0.1
132
Normal
0.1
823
Tumor
0.1
665
Tumor
0.1
864
Normal
0.0
375
Tumor
0.0
463
Tumor
0.0
131
Tumor
0.0
123
Tumor
-0.1
661
Tumor
-0.1
327
Tumor
-0.1
136
Normal
-0.1
494
Normal
-0.1
416
Normal
-0.1
228
Normal
-0.1
816
Normal
-0.1
956
Normal
-0.1
363
Tumor
-0.1
424
Normal
-0.2
217
Tumor
-0.2
313
Tumor
-0.2
728
Normal
-0.2
213
Tumor
-0.2
953
Tumor
-0.2
1042
Normal
-0.2
297
Tumor
-0.2
737
Tumor
-0.2
386
Normal
-0.2
125
Tumor
-0.3
422
Normal
-0.3
553
Tumor
-0.3
188
Normal
-0.3
452
Normal
-0.3
746
Normal
-0.3
414
Normal
-0.3
564
Normal
-0.3
258
Normal
-0.3
392
Normal
-0.3
185
Tumor
-0.3
877
Tumor
-0.3
312
Normal
-0.4
466
Normal
-0.4
818
Normal
-0.4
858
Normal
-0.4
232
Normal
-0.4
918
Normal
-0.4
618
Normal
-0.4
952
Normal
-0.4
262
Normal
-0.4
938
Normal
-0.4
468
Normal
-0.5
1015
Tumor
-0.5
616
Normal
-0.5
538
Normal
-0.5
648
Normal
-0.5
341
Tumor
-0.5
268
Normal
-0.5
126
Normal
-0.5
873
Tumor
-0.5
394
Normal
-0.5
852
Normal
-0.5
742
Normal
-0.5
1026
Normal
-0.5
365
Tumor
-0.5
311
Tumor
-0.5
642
Normal
-0.5
186
Normal
-0.5
558
Normal
-0.5
271
Tumor
-0.5
432
Normal
-0.5
666
Normal
-0.5
574
Normal
-0.5
411
Tumor
-0.5
128
Normal
-0.6
881
Tumor
-0.6
814
Normal
-0.6
1031
Tumor
-0.6
663
Tumor
-0.6
445
Tumor
-0.6
483
Tumor
-0.6
884
Normal
-0.6
138
Normal
-0.6
824
Normal
-0.6
916
Normal
-0.6
124
Normal
-0.6
874
Normal
-0.6
283
Tumor
-0.6
396
Normal
-0.6
351
Tumor
-0.6
343
Tumor
-0.7
395
Tumor
-0.7
723
Tumor
-0.7
261
Tumor
-0.7
862
Normal
-0.7
284
Normal
-0.7
963
Tumor
-0.7
628
Normal
-0.7
1032
Normal
-0.7
428
Normal
-0.7
362
Normal
-0.7
277
Tumor
-0.7
426
Normal
-0.7
937
Tumor
-0.7
393
Tumor
-0.7
461
Tumor
-0.7
976
Normal
-0.7
436
Normal
-0.7
366
Normal
-0.7
664
Normal
-0.7
376
Normal
-0.7
534
Normal
-0.8
456
Normal
-0.8
462
Normal
-0.8
146
Normal
-0.8
713
Tumor
-0.8
955
Tumor
-0.8
357
Tumor
-0.8
472
Normal
-0.8
358
Normal
-0.8
192
Normal
-0.8
314
Normal
-0.8
1044
Normal
-0.8
114
Normal
-0.8
878
Normal
-0.8
478
Normal
-0.8
142
Normal
-0.8
474
Normal
-0.8
224
Normal
-0.8
221
Tumor
-0.8
384
Normal
-0.9
172
Normal
-0.9
513
Tumor
-0.9
525
Tumor
-0.9
222
Normal
-0.9
1028
Normal
-0.9
434
Normal
-0.9
882
Normal
-0.9
148
Normal
-0.9
527
Tumor
-0.9
924
Normal
-0.9
866
Normal
-0.9
912
Normal
-0.9
353
Tumor
-0.9
572
Normal
-0.9
141
Tumor
-0.9
911
Tumor
-0.9
738
Normal
-0.9
368
Normal
-0.9
427
Tumor
-0.9
627
Tumor
-0.9
672
Normal
-0.9
978
Normal
-0.9
214
Normal
-0.9
491
Tumor
-0.9
958
Normal
-0.9
944
Normal
-0.9
982
Normal
-0.9
662
Normal
-0.9
111
Normal
-0.9
467
Tumor
-1.0
514
Normal
-1.0
464
Normal
-1.0
423
Tumor
-1.0
137
Tumor
-1.0
741
Tumor
-1.0
286
Normal
-1.0
926
Normal
-1.0
528
Normal
-1.0
212
Normal
-1.0
636
Normal
-1.0
571
Tumor
-1.0
446
Normal
-1.0
857
Tumor
-1.0
954
Normal
-1.0
722
Normal
-1.0
721
Tumor
-1.0
686
Normal
-1.1
727
Tumor
-1.1
966
Normal
-1.1
196
Normal
-1.1
433
Tumor
-1.1
716
Normal
-1.1
332
Normal
-1.1
298
Normal
-1.1
278
Normal
-1.1
383
Tumor
-1.1
447
Tumor
-1.1
744
Normal
-1.1
415
Tumor
-1.1
554
Normal
-1.2
162
Normal
-1.2
493
Tumor
-1.2
218
Normal
-1.2
696
Normal
-1.2
977
Tumor
-1.2
964
Normal
-1.3
448
Normal
-1.3
412
Normal
-1.3
914
Normal
-1.3
786
Normal
-1.3
868
Normal
-1.3
714
Normal
-1.3
546
Normal
-1.3
195
Tumor
-1.3
615
Tumor
-1.3
1022
Normal
-1.3
444
Normal
-1.3
518
Normal
-1.3
1016
Normal
-1.3
1013
Tumor
-1.4
968
Normal
-1.4
328
Normal
-1.4
356
Normal
-1.5
492
Normal
-1.5
917
Tumor
-1.5
756
Normal
-1.5
515
Tumor
-1.5
697
Tumor
-1.5
922
Normal
-1.5
536
Normal
-1.5
863
Tumor
-1.5
984
Normal
-1.6
943
Tumor
-1.6
545
Tumor
-1.6
913
Tumor
-1.6
482
Normal
-1.6
211
Tumor
-1.6
465
Tumor
-1.6
524
Normal
-1.6
352
Normal
-1.6
778
Normal
-1.6
498
Normal
-1.7
487
Tumor
-1.7
364
Normal
-1.7
647
Tumor
-1.7
526
Normal
-1.7
1014
Normal
-1.8
516
Normal
-1.8
785
Tumor
-1.8
1046
Normal
-1.9
777
Tumor
-1.9
981
Tumor
-2.0
698
Normal
-2.0
354
Normal
-2.0
484
Normal
-2.0
867
Tumor
-2.0
695
Tumor
-2.1
488
Normal
-2.1
481
Tumor
-2.2
342
Normal
-2.3
344
Normal
-2.4
1045
Tumor
-2.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.