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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS18A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
181.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
129.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
117.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
113.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
101.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
99.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
98.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
96.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
94.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
93.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
92.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
91.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
90.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
89.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
89.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
85.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
84.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
84.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
84.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
84.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
84.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
82.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
81.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
81.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
79.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
79.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
78.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
78.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
77.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
76.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
76.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
76.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
75.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
75.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
75.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
74.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
74.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
74.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
73.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
73.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
73.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
72.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
71.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
70.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
70.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
69.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
68.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
68.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
68.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
67.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
67.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
67.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
67.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
67.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
66.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
65.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
65.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
64.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
64.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
62.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
62.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
62.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
62.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
62.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
62.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
61.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
61.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
61.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
61.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
61.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
60.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
60.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
60.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
60.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
59.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
59.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
58.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
58.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
58.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
58.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
58.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
57.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
57.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
57.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
57.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
56.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
56.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
55.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
55.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
55.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
55.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
54.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
54.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
54.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
54.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
53.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
53.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
53.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
52.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
52.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
52.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
52.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
51.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
51.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
51.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
50.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
50.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
50.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
50.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
50.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
49.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
49.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
49.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
49.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
49.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
49.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
49.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
48.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
48.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
48.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
48.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
48.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
48.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
48.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
48.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
47.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
47.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
47.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
47.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
47.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
47.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
47.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
47.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
47.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
46.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
46.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
46.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
46.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
46.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
46.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
46.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
46.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
45.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
45.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
45.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
45.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
45.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
45.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
44.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
44.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
44.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
44.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
44.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
44.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
44.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
44.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
43.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
43.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
42.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
42.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
42.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
42.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
42.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
42.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
42.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
42.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
42.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
41.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
41.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
41.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
41.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
41.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
40.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
40.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
40.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
39.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
39.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
39.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
39.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
38.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
38.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
37.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
37.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
37.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
37.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
37.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
36.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
35.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
35.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
34.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
34.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
34.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
33.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
33.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
33.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
32.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
32.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
32.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
31.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
31.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
30.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
29.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
29.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
29.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
28.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
28.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
27.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
27.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
23.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
23.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS18A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.1
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
181.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
119.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
101.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
88.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
86.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
86.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
79.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
77.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
76.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
75.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
71.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
70.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
66.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
66.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
65.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
64.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
64.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
63.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
62.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
61.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
59.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
58.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
56.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
53.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
53.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
53.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
52.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
51.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
51.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
50.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
49.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
49.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
46.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
45.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
44.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
43.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
43.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
42.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
42.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
42.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
39.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
39.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
37.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
37.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
37.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
35.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
35.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
35.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
32.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
32.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
31.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
28.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.4
557
Tumor
1.2
1041
Tumor
1.2
411
Tumor
1.1
227
Tumor
1.1
957
Tumor
1.1
473
Tumor
1.1
685
Tumor
1.1
741
Tumor
1.0
171
Tumor
0.9
393
Tumor
0.9
533
Tumor
0.9
435
Tumor
0.9
883
Tumor
0.9
367
Tumor
0.9
355
Tumor
0.8
361
Tumor
0.8
525
Tumor
0.8
743
Tumor
0.8
911
Tumor
0.8
267
Tumor
0.8
483
Tumor
0.7
967
Tumor
0.7
231
Tumor
0.7
123
Tumor
0.7
715
Tumor
0.7
663
Tumor
0.7
427
Tumor
0.7
327
Tumor
0.7
951
Tumor
0.7
823
Tumor
0.7
277
Tumor
0.6
285
Tumor
0.6
915
Tumor
0.6
861
Tumor
0.6
363
Tumor
0.6
553
Tumor
0.6
537
Tumor
0.6
497
Tumor
0.6
665
Tumor
0.5
395
Tumor
0.5
187
Tumor
0.5
1021
Tumor
0.5
965
Tumor
0.5
641
Tumor
0.5
567
Tumor
0.5
351
Tumor
0.5
493
Tumor
0.5
223
Tumor
0.5
981
Tumor
0.5
423
Tumor
0.5
413
Tumor
0.5
913
Tumor
0.5
357
Tumor
0.5
221
Tumor
0.5
451
Tumor
0.5
127
Tumor
0.4
937
Tumor
0.4
713
Tumor
0.4
535
Tumor
0.4
463
Tumor
0.4
213
Tumor
0.4
477
Tumor
0.4
527
Tumor
0.4
1013
Tumor
0.4
671
Tumor
0.4
921
Tumor
0.4
147
Tumor
0.4
1025
Tumor
0.4
491
Tumor
0.4
261
Tumor
0.3
431
Tumor
0.3
627
Tumor
0.3
257
Tumor
0.3
375
Tumor
0.3
727
Tumor
0.3
195
Tumor
0.3
877
Tumor
0.3
113
Tumor
0.3
1043
Tumor
0.3
851
Tumor
0.3
867
Tumor
0.3
185
Tumor
0.3
271
Tumor
0.2
977
Tumor
0.2
817
Tumor
0.2
571
Tumor
0.2
755
Tumor
0.2
721
Tumor
0.2
573
Tumor
0.2
471
Tumor
0.2
925
Tumor
0.2
353
Tumor
0.2
635
Tumor
0.2
383
Tumor
0.2
661
Tumor
0.2
467
Tumor
0.2
815
Tumor
0.2
983
Tumor
0.2
391
Tumor
0.2
963
Tumor
0.2
141
Tumor
0.2
341
Tumor
0.2
331
Tumor
0.2
385
Tumor
0.2
387
Tumor
0.2
724
Normal
0.2
145
Tumor
0.2
785
Tumor
0.1
923
Tumor
0.1
745
Tumor
0.1
415
Tumor
0.1
647
Tumor
0.1
695
Tumor
0.1
975
Tumor
0.1
617
Tumor
0.1
112
Tumor
0.1
455
Tumor
0.1
137
Tumor
0.1
517
Tumor
0.1
523
Tumor
0.1
881
Tumor
0.1
191
Tumor
0.0
212
Normal
0.0
313
Tumor
0.0
211
Tumor
0.0
297
Tumor
0.0
1031
Tumor
0.0
135
Tumor
0.0
642
Normal
0.0
284
Normal
0.0
356
Normal
0.0
953
Tumor
0.0
446
Normal
0.0
487
Tumor
0.0
618
Normal
0.0
328
Normal
0.0
443
Tumor
0.0
481
Tumor
0.0
728
Normal
0.0
466
Normal
-0.1
1027
Tumor
-0.1
1032
Normal
-0.1
1028
Normal
-0.1
1015
Tumor
-0.1
563
Tumor
-0.1
283
Tumor
-0.1
447
Tumor
-0.1
914
Normal
-0.1
416
Normal
-0.1
286
Normal
-0.1
365
Tumor
-0.1
396
Normal
-0.1
432
Normal
-0.1
422
Normal
-0.1
278
Normal
-0.1
857
Tumor
-0.1
388
Normal
-0.1
436
Normal
-0.1
312
Normal
-0.1
311
Tumor
-0.1
132
Normal
-0.1
464
Normal
-0.1
412
Normal
-0.1
628
Normal
-0.1
564
Normal
-0.1
615
Tumor
-0.1
1022
Normal
-0.1
444
Normal
-0.1
737
Tumor
-0.1
364
Normal
-0.1
394
Normal
-0.1
445
Tumor
-0.2
172
Normal
-0.2
465
Tumor
-0.2
362
Normal
-0.2
128
Normal
-0.2
878
Normal
-0.2
916
Normal
-0.2
434
Normal
-0.2
944
Normal
-0.2
864
Normal
-0.2
136
Normal
-0.2
131
Tumor
-0.2
697
Tumor
-0.2
142
Normal
-0.2
125
Tumor
-0.2
162
Normal
-0.2
258
Normal
-0.2
232
Normal
-0.2
572
Normal
-0.2
816
Normal
-0.2
188
Normal
-0.2
616
Normal
-0.2
214
Normal
-0.2
148
Normal
-0.2
366
Normal
-0.2
482
Normal
-0.2
224
Normal
-0.2
738
Normal
-0.2
468
Normal
-0.2
376
Normal
-0.2
114
Normal
-0.2
461
Tumor
-0.2
161
Tumor
-0.2
217
Tumor
-0.2
314
Normal
-0.2
272
Normal
-0.2
938
Normal
-0.3
698
Normal
-0.3
723
Tumor
-0.3
918
Normal
-0.3
428
Normal
-0.3
528
Normal
-0.3
546
Normal
-0.3
433
Tumor
-0.3
228
Normal
-0.3
866
Normal
-0.3
456
Normal
-0.3
982
Normal
-0.3
554
Normal
-0.3
494
Normal
-0.3
138
Normal
-0.3
386
Normal
-0.3
484
Normal
-0.3
384
Normal
-0.3
474
Normal
-0.3
786
Normal
-0.3
545
Tumor
-0.3
777
Tumor
-0.3
358
Normal
-0.3
392
Normal
-0.3
966
Normal
-0.3
568
Normal
-0.3
526
Normal
-0.3
448
Normal
-0.3
516
Normal
-0.3
426
Normal
-0.3
414
Normal
-0.3
424
Normal
-0.3
873
Tumor
-0.3
534
Normal
-0.3
912
Normal
-0.3
722
Normal
-0.3
976
Normal
-0.3
1026
Normal
-0.3
452
Normal
-0.3
196
Normal
-0.3
462
Normal
-0.3
824
Normal
-0.3
262
Normal
-0.3
421
Tumor
-0.3
518
Normal
-0.3
964
Normal
-0.3
111
Normal
-0.3
952
Normal
-0.3
958
Normal
-0.4
924
Normal
-0.4
1016
Normal
-0.4
956
Normal
-0.4
926
Normal
-0.4
664
Normal
-0.4
124
Normal
-0.4
756
Normal
-0.4
186
Normal
-0.4
696
Normal
-0.4
874
Normal
-0.4
514
Normal
-0.4
955
Tumor
-0.4
917
Tumor
-0.4
742
Normal
-0.4
472
Normal
-0.4
868
Normal
-0.4
968
Normal
-0.4
1042
Normal
-0.4
368
Normal
-0.4
222
Normal
-0.4
488
Normal
-0.4
558
Normal
-0.4
922
Normal
-0.4
268
Normal
-0.4
636
Normal
-0.4
126
Normal
-0.4
862
Normal
-0.4
1045
Tumor
-0.4
858
Normal
-0.5
943
Tumor
-0.5
1014
Normal
-0.5
778
Normal
-0.5
192
Normal
-0.5
298
Normal
-0.5
574
Normal
-0.5
662
Normal
-0.5
146
Normal
-0.5
343
Tumor
-0.5
714
Normal
-0.5
814
Normal
-0.5
352
Normal
-0.5
852
Normal
-0.5
332
Normal
-0.5
492
Normal
-0.6
716
Normal
-0.6
984
Normal
-0.6
813
Tumor
-0.6
648
Normal
-0.6
513
Tumor
-0.6
686
Normal
-0.6
524
Normal
-0.6
1044
Normal
-0.6
818
Normal
-0.6
978
Normal
-0.6
882
Normal
-0.6
884
Normal
-0.6
1046
Normal
-0.6
954
Normal
-0.6
478
Normal
-0.6
515
Tumor
-0.6
538
Normal
-0.6
746
Normal
-0.6
344
Normal
-0.6
342
Normal
-0.7
498
Normal
-0.7
666
Normal
-0.7
354
Normal
-0.7
218
Normal
-0.7
425
Tumor
-0.8
744
Normal
-0.8
536
Normal
-0.9
672
Normal
-0.9
863
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
