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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEMA4G is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
179.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
176.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
151.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
141.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
139.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
136.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
131.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
128.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
126.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
124.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
120.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
116.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
115.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
111.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
111.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
107.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
106.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
104.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
98.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
98.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
98.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
96.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
94.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
93.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
92.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
89.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
89.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
88.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
87.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
85.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
85.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
83.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
82.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
81.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
80.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
79.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
77.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
75.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
75.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
74.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
74.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
71.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
71.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
70.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
70.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
69.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
69.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
67.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
67.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
66.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
65.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
65.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
64.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
63.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
62.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
62.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
61.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
61.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
61.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
61.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
60.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
60.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
59.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
59.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
59.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
58.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
58.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
58.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
58.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
58.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
57.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
57.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
57.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
57.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
57.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
57.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
56.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
55.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
55.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
55.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
54.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
52.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
52.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
52.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
52.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
52.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
51.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
51.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
51.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
51.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
50.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
50.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
50.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
49.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
49.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
49.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
48.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
48.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
48.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
48.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
48.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
47.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
47.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
47.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
47.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
47.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
46.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
46.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
46.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
46.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
46.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
46.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
46.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
46.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
45.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
45.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
45.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
45.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
45.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
44.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
43.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
43.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
42.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
42.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
42.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
42.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
42.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
41.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
40.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
40.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
39.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
39.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
39.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
38.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
38.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
38.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
37.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
37.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
37.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
37.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
36.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
36.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
36.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
36.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
33.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
33.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
32.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
32.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
31.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
31.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
31.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
30.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
30.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
29.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
29.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
28.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
27.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
26.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEMA4G is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.4
Number of samples
231
Samples
Sample
Description
TPM
DO50820
0 years, female, NA, stage:3, alive, 510 days
121.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
119.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
97.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
95.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
93.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
93.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
83.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
79.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
77.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
70.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
65.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
64.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
64.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
59.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
57.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
57.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
56.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
55.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
53.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
53.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
51.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
51.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
50.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
50.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
50.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
48.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
48.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
45.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
45.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
45.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
43.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
42.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
40.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
39.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
39.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
38.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
38.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
38.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
37.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
37.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
36.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
35.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
35.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
34.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
33.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
33.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
30.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
1.2
131
Tumor
1.2
271
Tumor
1.1
517
Tumor
1.1
921
Tumor
1.1
965
Tumor
1.0
553
Tumor
0.9
123
Tumor
0.9
127
Tumor
0.8
877
Tumor
0.8
967
Tumor
0.7
361
Tumor
0.7
227
Tumor
0.7
1027
Tumor
0.6
568
Normal
0.6
147
Tumor
0.6
1031
Tumor
0.6
341
Tumor
0.6
727
Tumor
0.6
363
Tumor
0.6
368
Normal
0.5
435
Tumor
0.5
951
Tumor
0.5
648
Normal
0.5
331
Tumor
0.5
851
Tumor
0.5
113
Tumor
0.5
221
Tumor
0.5
413
Tumor
0.5
393
Tumor
0.5
257
Tumor
0.5
983
Tumor
0.5
944
Normal
0.5
327
Tumor
0.5
713
Tumor
0.4
616
Normal
0.4
484
Normal
0.4
1045
Tumor
0.4
534
Normal
0.4
465
Tumor
0.4
481
Tumor
0.4
641
Tumor
0.4
743
Tumor
0.4
963
Tumor
0.4
922
Normal
0.3
571
Tumor
0.3
132
Normal
0.3
738
Normal
0.3
232
Normal
0.3
666
Normal
0.3
567
Tumor
0.3
376
Normal
0.3
742
Normal
0.3
482
Normal
0.3
488
Normal
0.3
924
Normal
0.3
328
Normal
0.3
366
Normal
0.3
452
Normal
0.3
415
Tumor
0.3
664
Normal
0.3
342
Normal
0.3
171
Tumor
0.3
114
Normal
0.3
647
Tumor
0.3
723
Tumor
0.3
695
Tumor
0.3
222
Normal
0.3
456
Normal
0.3
1046
Normal
0.3
516
Normal
0.3
196
Normal
0.3
671
Tumor
0.2
518
Normal
0.2
722
Normal
0.2
546
Normal
0.2
865
Tumor
0.2
572
Normal
0.2
468
Normal
0.2
975
Tumor
0.2
526
Normal
0.2
128
Normal
0.2
112
Tumor
0.2
954
Normal
0.2
923
Tumor
0.2
977
Tumor
0.2
615
Tumor
0.2
745
Tumor
0.2
714
Normal
0.2
874
Normal
0.2
258
Normal
0.2
554
Normal
0.2
917
Tumor
0.2
915
Tumor
0.2
464
Normal
0.2
926
Normal
0.2
918
Normal
0.2
824
Normal
0.2
443
Tumor
0.2
358
Normal
0.2
1014
Normal
0.2
533
Tumor
0.2
564
Normal
0.2
628
Normal
0.2
477
Tumor
0.2
574
Normal
0.2
362
Normal
0.2
728
Normal
0.2
411
Tumor
0.2
111
Normal
0.1
314
Normal
0.1
558
Normal
0.1
466
Normal
0.1
1043
Tumor
0.1
365
Tumor
0.1
937
Tumor
0.1
914
Normal
0.1
662
Normal
0.1
426
Normal
0.1
428
Normal
0.1
436
Normal
0.1
982
Normal
0.1
557
Tumor
0.1
1021
Tumor
0.1
214
Normal
0.1
472
Normal
0.1
213
Tumor
0.1
218
Normal
0.1
356
Normal
0.1
494
Normal
0.1
698
Normal
0.1
416
Normal
0.1
642
Normal
0.1
162
Normal
0.1
286
Normal
0.1
451
Tumor
0.1
142
Normal
0.1
715
Tumor
0.1
1044
Normal
0.1
537
Tumor
0.1
1028
Normal
0.1
1022
Normal
0.1
867
Tumor
0.1
672
Normal
0.1
412
Normal
0.1
925
Tumor
0.1
126
Normal
0.1
357
Tumor
0.1
136
Normal
0.1
272
Normal
0.1
387
Tumor
0.1
432
Normal
0.1
172
Normal
0.1
462
Normal
0.1
1032
Normal
0.0
514
Normal
0.0
138
Normal
0.0
513
Tumor
0.0
261
Tumor
0.0
912
Normal
0.0
298
Normal
0.0
364
Normal
0.0
212
Normal
0.0
883
Tumor
0.0
396
Normal
0.0
277
Tumor
0.0
267
Tumor
0.0
186
Normal
0.0
866
Normal
0.0
1041
Tumor
0.0
635
Tumor
0.0
816
Normal
0.0
938
Normal
0.0
878
Normal
0.0
124
Normal
0.0
392
Normal
0.0
716
Normal
0.0
414
Normal
0.0
448
Normal
0.0
447
Tumor
0.0
278
Normal
0.0
474
Normal
0.0
756
Normal
0.0
916
Normal
0.0
868
Normal
0.0
1026
Normal
0.0
528
Normal
0.0
618
Normal
0.0
964
Normal
0.0
978
Normal
0.0
1016
Normal
0.0
746
Normal
0.0
493
Tumor
0.0
424
Normal
0.0
755
Tumor
0.0
187
Tumor
0.0
686
Normal
0.0
862
Normal
0.0
1042
Normal
0.0
391
Tumor
0.0
744
Normal
0.0
786
Normal
0.0
217
Tumor
0.0
617
Tumor
-0.1
823
Tumor
-0.1
968
Normal
-0.1
446
Normal
-0.1
737
Tumor
-0.1
535
Tumor
-0.1
881
Tumor
-0.1
984
Normal
-0.1
284
Normal
-0.1
463
Tumor
-0.1
545
Tumor
-0.1
956
Normal
-0.1
882
Normal
-0.1
285
Tumor
-0.1
185
Tumor
-0.1
434
Normal
-0.1
191
Tumor
-0.1
384
Normal
-0.1
636
Normal
-0.1
431
Tumor
-0.1
148
Normal
-0.1
523
Tumor
-0.1
815
Tumor
-0.1
721
Tumor
-0.1
966
Normal
-0.1
953
Tumor
-0.1
422
Normal
-0.1
332
Normal
-0.1
228
Normal
-0.1
858
Normal
-0.1
952
Normal
-0.1
852
Normal
-0.1
958
Normal
-0.1
818
Normal
-0.1
388
Normal
-0.1
957
Tumor
-0.1
884
Normal
-0.1
981
Tumor
-0.1
778
Normal
-0.1
297
Tumor
-0.1
385
Tumor
-0.1
864
Normal
-0.1
125
Tumor
-0.1
343
Tumor
-0.2
777
Tumor
-0.2
344
Normal
-0.2
498
Normal
-0.2
483
Tumor
-0.2
785
Tumor
-0.2
473
Tumor
-0.2
433
Tumor
-0.2
696
Normal
-0.2
145
Tumor
-0.2
188
Normal
-0.2
525
Tumor
-0.2
268
Normal
-0.2
911
Tumor
-0.2
741
Tumor
-0.2
262
Normal
-0.2
861
Tumor
-0.2
497
Tumor
-0.2
873
Tumor
-0.2
515
Tumor
-0.2
697
Tumor
-0.2
224
Normal
-0.2
492
Normal
-0.2
312
Normal
-0.2
367
Tumor
-0.3
231
Tumor
-0.3
394
Normal
-0.3
146
Normal
-0.3
445
Tumor
-0.3
386
Normal
-0.3
487
Tumor
-0.3
353
Tumor
-0.3
478
Normal
-0.3
857
Tumor
-0.3
661
Tumor
-0.3
471
Tumor
-0.3
538
Normal
-0.3
524
Normal
-0.3
863
Tumor
-0.3
627
Tumor
-0.3
192
Normal
-0.3
563
Tumor
-0.3
467
Tumor
-0.3
355
Tumor
-0.3
351
Tumor
-0.3
817
Tumor
-0.3
1013
Tumor
-0.4
955
Tumor
-0.4
395
Tumor
-0.4
352
Normal
-0.4
976
Normal
-0.4
536
Normal
-0.4
354
Normal
-0.4
311
Tumor
-0.4
573
Tumor
-0.4
685
Tumor
-0.4
1015
Tumor
-0.4
461
Tumor
-0.4
223
Tumor
-0.4
137
Tumor
-0.4
313
Tumor
-0.5
444
Normal
-0.5
195
Tumor
-0.5
421
Tumor
-0.5
665
Tumor
-0.5
141
Tumor
-0.5
161
Tumor
-0.5
491
Tumor
-0.5
135
Tumor
-0.6
663
Tumor
-0.6
383
Tumor
-0.6
455
Tumor
-0.6
283
Tumor
-0.7
813
Tumor
-0.7
375
Tumor
-0.7
913
Tumor
-0.7
423
Tumor
-0.7
943
Tumor
-0.7
814
Normal
-0.8
527
Tumor
-0.9
724
Normal
-0.9
425
Tumor
-1.0
211
Tumor
-1.2
427
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
