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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM38B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
68.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
62.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
49.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
40.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
38.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM38B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.0
Number of samples
231
Samples
Sample
Description
TPM
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.7
435
Tumor
1.5
257
Tumor
1.4
313
Tumor
1.3
491
Tumor
1.3
431
Tumor
1.2
277
Tumor
1.2
957
Tumor
1.2
635
Tumor
1.1
745
Tumor
1.1
695
Tumor
1.1
537
Tumor
1.0
851
Tumor
1.0
523
Tumor
1.0
341
Tumor
1.0
463
Tumor
0.9
125
Tumor
0.9
567
Tumor
0.9
445
Tumor
0.9
923
Tumor
0.8
227
Tumor
0.8
353
Tumor
0.8
967
Tumor
0.7
497
Tumor
0.7
487
Tumor
0.7
533
Tumor
0.7
571
Tumor
0.7
357
Tumor
0.7
815
Tumor
0.6
355
Tumor
0.6
425
Tumor
0.6
147
Tumor
0.6
665
Tumor
0.6
915
Tumor
0.6
267
Tumor
0.6
513
Tumor
0.6
865
Tumor
0.5
161
Tumor
0.5
755
Tumor
0.5
261
Tumor
0.5
375
Tumor
0.5
813
Tumor
0.5
863
Tumor
0.5
358
Normal
0.5
981
Tumor
0.5
553
Tumor
0.5
231
Tumor
0.5
1043
Tumor
0.5
663
Tumor
0.5
953
Tumor
0.5
527
Tumor
0.4
615
Tumor
0.4
785
Tumor
0.4
481
Tumor
0.4
354
Normal
0.4
557
Tumor
0.4
351
Tumor
0.4
343
Tumor
0.4
187
Tumor
0.3
483
Tumor
0.3
443
Tumor
0.3
517
Tumor
0.3
647
Tumor
0.3
127
Tumor
0.3
861
Tumor
0.3
171
Tumor
0.3
393
Tumor
0.3
391
Tumor
0.3
433
Tumor
0.3
387
Tumor
0.3
411
Tumor
0.2
697
Tumor
0.2
342
Normal
0.2
361
Tumor
0.2
223
Tumor
0.2
484
Normal
0.2
332
Normal
0.2
724
Normal
0.2
423
Tumor
0.2
965
Tumor
0.2
365
Tumor
0.2
977
Tumor
0.1
298
Normal
0.1
777
Tumor
0.1
554
Normal
0.1
135
Tumor
0.1
498
Normal
0.1
617
Tumor
0.1
938
Normal
0.1
278
Normal
0.1
383
Tumor
0.1
573
Tumor
0.1
145
Tumor
0.1
186
Normal
0.1
314
Normal
0.1
488
Normal
0.1
721
Tumor
0.0
352
Normal
0.0
285
Tumor
0.0
868
Normal
0.0
465
Tumor
0.0
823
Tumor
0.0
427
Tumor
0.0
271
Tumor
0.0
943
Tumor
0.0
113
Tumor
0.0
937
Tumor
0.0
741
Tumor
0.0
493
Tumor
0.0
123
Tumor
0.0
546
Normal
0.0
963
Tumor
0.0
467
Tumor
0.0
862
Normal
0.0
873
Tumor
0.0
471
Tumor
0.0
344
Normal
0.0
534
Normal
0.0
436
Normal
0.0
715
Tumor
0.0
162
Normal
0.0
867
Tumor
-0.1
494
Normal
-0.1
432
Normal
-0.1
446
Normal
-0.1
128
Normal
-0.1
172
Normal
-0.1
452
Normal
-0.1
1015
Tumor
-0.1
1014
Normal
-0.1
525
Tumor
-0.1
1031
Tumor
-0.1
366
Normal
-0.1
515
Tumor
-0.1
148
Normal
-0.1
954
Normal
-0.1
331
Tumor
-0.1
376
Normal
-0.1
944
Normal
-0.1
327
Tumor
-0.1
926
Normal
-0.1
978
Normal
-0.1
696
Normal
-0.1
388
Normal
-0.1
572
Normal
-0.1
185
Tumor
-0.1
737
Tumor
-0.1
913
Tumor
-0.1
968
Normal
-0.2
528
Normal
-0.2
727
Tumor
-0.2
137
Tumor
-0.2
477
Tumor
-0.2
857
Tumor
-0.2
412
Normal
-0.2
975
Tumor
-0.2
1025
Tumor
-0.2
814
Normal
-0.2
434
Normal
-0.2
983
Tumor
-0.2
956
Normal
-0.2
538
Normal
-0.2
312
Normal
-0.2
514
Normal
-0.2
526
Normal
-0.2
456
Normal
-0.2
464
Normal
-0.2
558
Normal
-0.2
864
Normal
-0.2
232
Normal
-0.2
911
Tumor
-0.2
921
Tumor
-0.2
564
Normal
-0.2
627
Tumor
-0.2
368
Normal
-0.2
955
Tumor
-0.2
356
Normal
-0.2
818
Normal
-0.2
384
Normal
-0.2
922
Normal
-0.2
671
Tumor
-0.2
328
Normal
-0.2
966
Normal
-0.3
568
Normal
-0.3
524
Normal
-0.3
958
Normal
-0.3
297
Tumor
-0.3
364
Normal
-0.3
742
Normal
-0.3
516
Normal
-0.3
648
Normal
-0.3
722
Normal
-0.3
141
Tumor
-0.3
421
Tumor
-0.3
866
Normal
-0.3
468
Normal
-0.3
131
Tumor
-0.3
212
Normal
-0.3
925
Tumor
-0.3
191
Tumor
-0.3
1016
Normal
-0.3
455
Tumor
-0.3
786
Normal
-0.3
283
Tumor
-0.3
918
Normal
-0.3
636
Normal
-0.3
142
Normal
-0.3
492
Normal
-0.3
228
Normal
-0.3
444
Normal
-0.3
778
Normal
-0.3
685
Tumor
-0.3
1022
Normal
-0.3
686
Normal
-0.3
824
Normal
-0.3
286
Normal
-0.3
545
Tumor
-0.3
112
Tumor
-0.3
662
Normal
-0.3
874
Normal
-0.3
518
Normal
-0.4
392
Normal
-0.4
744
Normal
-0.4
396
Normal
-0.4
852
Normal
-0.4
462
Normal
-0.4
641
Tumor
-0.4
858
Normal
-0.4
124
Normal
-0.4
451
Tumor
-0.4
132
Normal
-0.4
535
Tumor
-0.4
984
Normal
-0.4
367
Tumor
-0.4
664
Normal
-0.4
466
Normal
-0.4
188
Normal
-0.4
716
Normal
-0.4
1021
Tumor
-0.4
362
Normal
-0.4
1044
Normal
-0.4
1045
Tumor
-0.4
618
Normal
-0.4
964
Normal
-0.4
713
Tumor
-0.4
114
Normal
-0.4
415
Tumor
-0.4
422
Normal
-0.4
723
Tumor
-0.4
221
Tumor
-0.4
976
Normal
-0.4
924
Normal
-0.4
1026
Normal
-0.4
1032
Normal
-0.5
473
Tumor
-0.5
1027
Tumor
-0.5
284
Normal
-0.5
414
Normal
-0.5
394
Normal
-0.5
666
Normal
-0.5
428
Normal
-0.5
952
Normal
-0.5
628
Normal
-0.5
714
Normal
-0.5
951
Tumor
-0.5
672
Normal
-0.5
1041
Tumor
-0.5
1046
Normal
-0.5
196
Normal
-0.5
982
Normal
-0.5
136
Normal
-0.5
563
Tumor
-0.5
448
Normal
-0.5
916
Normal
-0.5
258
Normal
-0.5
756
Normal
-0.5
262
Normal
-0.5
912
Normal
-0.5
424
Normal
-0.5
472
Normal
-0.5
698
Normal
-0.6
224
Normal
-0.6
574
Normal
-0.6
878
Normal
-0.6
738
Normal
-0.6
138
Normal
-0.6
616
Normal
-0.6
474
Normal
-0.6
816
Normal
-0.6
728
Normal
-0.6
126
Normal
-0.6
642
Normal
-0.6
111
Normal
-0.6
217
Tumor
-0.6
363
Tumor
-0.6
482
Normal
-0.6
213
Tumor
-0.6
743
Tumor
-0.6
146
Normal
-0.6
272
Normal
-0.6
416
Normal
-0.6
195
Tumor
-0.6
746
Normal
-0.6
461
Tumor
-0.6
426
Normal
-0.7
447
Tumor
-0.7
1042
Normal
-0.7
413
Tumor
-0.7
883
Tumor
-0.7
386
Normal
-0.7
1028
Normal
-0.7
884
Normal
-0.7
914
Normal
-0.8
661
Tumor
-0.8
218
Normal
-0.8
882
Normal
-0.8
211
Tumor
-0.8
478
Normal
-0.8
385
Tumor
-0.8
877
Tumor
-0.8
214
Normal
-0.9
536
Normal
-0.9
395
Tumor
-0.9
222
Normal
-0.9
268
Normal
-0.9
917
Tumor
-1.0
311
Tumor
-1.1
881
Tumor
-1.1
817
Tumor
-1.3
192
Normal
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
