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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSME1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
117.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
428.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
358.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
306.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
279.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
262.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
262.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
248.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
245.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
239.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
237.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
235.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
223.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
219.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
219.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
216.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
210.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
205.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
202.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
200.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
198.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
196.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
193.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
190.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
189.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
188.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
185.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
184.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
182.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
182.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
181.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
181.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
181.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
180.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
175.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
174.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
174.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
173.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
173.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
173.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
173.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
173.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
172.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
171.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
171.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
171.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
171.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
170.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
168.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
167.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
166.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
166.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
165.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
164.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
164.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
162.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
161.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
161.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
159.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
159.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
159.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
157.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
157.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
156.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
156.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
156.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
155.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
153.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
150.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
149.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
149.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
148.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
148.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
146.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
146.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
145.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
145.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
145.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
145.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
144.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
144.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
143.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
143.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
143.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
143.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
142.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
140.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
140.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
140.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
139.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
139.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
138.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
138.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
137.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
137.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
137.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
136.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
136.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
136.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
135.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
134.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
133.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
133.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
133.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
133.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
133.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
132.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
132.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
132.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
131.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
131.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
130.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
130.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
130.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
130.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
130.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
129.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
129.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
128.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
127.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
127.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
127.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
127.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
127.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
126.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
126.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
125.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
125.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
125.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
124.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
124.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
124.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
124.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
123.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
123.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
123.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
122.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
122.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
122.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
122.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
121.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
121.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
121.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
121.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
121.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
121.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
121.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
121.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
121.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
121.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
120.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
120.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
120.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
119.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
118.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
118.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
118.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
117.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
117.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
116.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
116.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
116.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
116.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
115.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
115.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
115.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
114.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
114.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
114.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
113.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
113.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
113.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
113.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
112.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
112.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
112.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
112.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
111.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
110.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
110.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
110.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
110.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
110.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
109.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
109.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
109.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
109.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
109.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
109.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
108.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
108.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
108.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
108.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
107.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
107.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
106.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
106.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
106.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
105.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
105.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
105.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
104.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
104.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
103.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
103.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
103.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
103.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
103.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
103.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
102.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
102.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
102.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
102.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
101.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
101.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
101.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
101.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
101.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
101.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
100.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
100.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
100.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
99.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
99.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
98.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
98.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
98.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
98.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
98.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
97.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
96.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
96.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
96.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
95.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
95.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
95.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
95.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
95.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
94.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
94.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
94.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
93.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
93.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
93.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
93.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
93.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
92.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
92.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
92.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
91.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
91.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
91.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
90.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
90.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
90.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
90.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
90.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
89.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
88.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
88.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
87.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
87.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
86.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
86.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
86.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
85.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
85.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
85.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
84.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
84.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
84.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
84.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
84.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
84.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
83.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
83.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
82.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
82.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
82.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
81.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
81.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
81.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
81.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
80.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
79.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
79.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
79.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
79.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
78.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
78.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
78.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
78.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
77.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
77.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
76.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
75.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
75.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
75.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
75.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
75.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
75.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
74.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
74.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
74.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
73.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
73.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
73.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
72.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
72.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
71.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
71.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
70.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
70.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
69.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
69.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
68.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
68.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
68.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
68.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
67.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
65.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
65.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
65.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
64.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
64.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
64.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
63.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
63.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
63.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
62.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
62.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
61.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
61.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
61.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
60.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
60.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
60.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
59.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
58.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
58.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
56.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
56.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
56.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
55.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
54.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
54.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
53.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
52.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
52.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
50.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
50.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
49.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
47.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
44.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
43.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
43.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
41.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
41.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
41.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
39.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
39.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSME1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
192.7
Number of samples
231
Samples
Sample
Description
TPM
DO50832
0 years, male, NA, stage:3, alive, 90 days
517.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
467.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
429.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
412.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
398.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
390.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
386.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
367.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
352.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
351.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
346.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
346.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
343.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
341.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
336.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
333.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
329.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
321.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
302.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
300.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
296.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
287.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
285.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
281.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
279.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
272.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
272.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
269.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
267.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
262.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
260.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
257.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
254.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
254.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
253.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
249.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
248.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
248.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
247.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
247.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
246.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
246.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
245.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
244.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
243.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
243.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
241.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
241.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
240.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
237.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
236.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
234.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
233.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
231.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
231.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
230.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
230.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
229.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
228.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
227.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
226.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
226.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
223.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
223.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
222.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
221.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
220.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
219.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
218.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
217.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
217.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
217.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
215.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
214.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
214.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
211.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
211.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
211.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
210.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
210.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
208.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
208.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
207.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
206.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
206.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
206.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
204.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
202.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
202.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
200.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
200.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
200.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
199.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
198.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
197.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
196.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
195.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
194.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
193.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
193.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
192.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
191.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
190.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
189.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
188.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
188.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
188.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
187.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
187.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
186.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
186.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
185.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
184.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
184.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
183.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
183.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
183.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
181.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
180.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
180.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
179.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
179.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
178.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
177.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
177.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
176.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
175.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
173.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
173.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
171.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
171.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
171.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
170.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
170.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
170.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
169.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
169.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
167.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
166.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
166.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
166.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
165.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
164.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
163.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
161.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
160.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
157.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
155.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
155.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
155.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
154.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
153.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
152.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
151.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
149.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
149.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
149.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
149.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
148.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
148.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
147.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
147.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
146.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
146.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
146.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
146.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
145.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
145.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
145.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
140.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
140.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
140.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
140.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
139.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
139.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
139.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
138.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
138.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
138.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
137.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
137.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
136.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
136.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
135.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
134.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
132.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
132.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
131.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
129.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
129.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
129.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
126.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
126.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
125.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
123.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
123.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
122.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
122.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
120.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
120.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
119.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
119.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
116.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
115.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
115.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
115.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
114.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
113.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
112.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
110.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
108.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
105.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
105.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
102.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
100.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
99.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
99.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
99.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
99.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
94.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
90.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
86.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
82.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
81.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
80.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
77.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
76.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
74.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
69.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
67.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
62.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
515
Tumor
0.7
978
Normal
0.7
966
Normal
0.7
1031
Tumor
0.6
865
Tumor
0.6
777
Tumor
0.6
952
Normal
0.6
516
Normal
0.6
1043
Tumor
0.6
416
Normal
0.6
884
Normal
0.6
755
Tumor
0.5
277
Tumor
0.5
955
Tumor
0.5
824
Normal
0.5
627
Tumor
0.5
487
Tumor
0.5
786
Normal
0.5
915
Tumor
0.5
483
Tumor
0.5
523
Tumor
0.5
327
Tumor
0.5
964
Normal
0.5
727
Tumor
0.5
858
Normal
0.5
477
Tumor
0.5
484
Normal
0.4
914
Normal
0.4
663
Tumor
0.4
912
Normal
0.4
1046
Normal
0.4
262
Normal
0.4
514
Normal
0.4
188
Normal
0.4
882
Normal
0.4
482
Normal
0.4
212
Normal
0.4
818
Normal
0.4
867
Tumor
0.4
746
Normal
0.4
513
Tumor
0.4
926
Normal
0.4
738
Normal
0.4
1013
Tumor
0.4
666
Normal
0.4
456
Normal
0.4
213
Tumor
0.4
695
Tumor
0.4
862
Normal
0.4
698
Normal
0.4
362
Normal
0.4
938
Normal
0.4
127
Tumor
0.4
1014
Normal
0.4
756
Normal
0.4
956
Normal
0.4
218
Normal
0.4
432
Normal
0.4
866
Normal
0.4
528
Normal
0.3
472
Normal
0.3
922
Normal
0.3
628
Normal
0.3
386
Normal
0.3
714
Normal
0.3
222
Normal
0.3
414
Normal
0.3
923
Tumor
0.3
723
Tumor
0.3
721
Tumor
0.3
662
Normal
0.3
742
Normal
0.3
982
Normal
0.3
286
Normal
0.3
664
Normal
0.3
518
Normal
0.3
546
Normal
0.3
1026
Normal
0.3
861
Tumor
0.3
878
Normal
0.3
448
Normal
0.3
1022
Normal
0.3
857
Tumor
0.3
196
Normal
0.3
141
Tumor
0.3
1015
Tumor
0.3
685
Tumor
0.3
364
Normal
0.3
272
Normal
0.3
1044
Normal
0.3
716
Normal
0.3
126
Normal
0.3
366
Normal
0.3
136
Normal
0.3
616
Normal
0.3
436
Normal
0.3
228
Normal
0.3
314
Normal
0.3
1016
Normal
0.3
162
Normal
0.3
1045
Tumor
0.3
873
Tumor
0.3
434
Normal
0.3
728
Normal
0.3
615
Tumor
0.3
864
Normal
0.3
493
Tumor
0.3
328
Normal
0.3
258
Normal
0.3
527
Tumor
0.3
937
Tumor
0.3
492
Normal
0.2
778
Normal
0.2
356
Normal
0.2
461
Tumor
0.2
916
Normal
0.2
462
Normal
0.2
554
Normal
0.2
868
Normal
0.2
358
Normal
0.2
488
Normal
0.2
146
Normal
0.2
114
Normal
0.2
686
Normal
0.2
217
Tumor
0.2
648
Normal
0.2
816
Normal
0.2
722
Normal
0.2
534
Normal
0.2
635
Tumor
0.2
958
Normal
0.2
211
Tumor
0.2
298
Normal
0.2
696
Normal
0.2
917
Tumor
0.2
412
Normal
0.2
431
Tumor
0.2
553
Tumor
0.2
785
Tumor
0.2
874
Normal
0.2
568
Normal
0.2
571
Tumor
0.2
278
Normal
0.2
138
Normal
0.2
497
Tumor
0.2
741
Tumor
0.2
474
Normal
0.2
148
Normal
0.2
353
Tumor
0.2
618
Normal
0.2
424
Normal
0.2
376
Normal
0.2
396
Normal
0.2
342
Normal
0.2
452
Normal
0.2
852
Normal
0.2
924
Normal
0.2
415
Tumor
0.2
494
Normal
0.2
524
Normal
0.2
261
Tumor
0.2
172
Normal
0.2
284
Normal
0.2
428
Normal
0.2
111
Normal
0.2
422
Normal
0.2
132
Normal
0.2
112
Tumor
0.2
536
Normal
0.2
911
Tumor
0.2
195
Tumor
0.1
426
Normal
0.1
951
Tumor
0.1
724
Normal
0.1
498
Normal
0.1
128
Normal
0.1
464
Normal
0.1
394
Normal
0.1
1032
Normal
0.1
123
Tumor
0.1
883
Tumor
0.1
745
Tumor
0.1
918
Normal
0.1
214
Normal
0.1
737
Tumor
0.1
977
Tumor
0.1
814
Normal
0.1
365
Tumor
0.1
642
Normal
0.1
224
Normal
0.1
471
Tumor
0.1
1028
Normal
0.1
984
Normal
0.1
186
Normal
0.1
388
Normal
0.1
344
Normal
0.1
466
Normal
0.1
823
Tumor
0.1
192
Normal
0.1
446
Normal
0.1
313
Tumor
0.1
944
Normal
0.1
481
Tumor
0.1
332
Normal
0.1
423
Tumor
0.1
1042
Normal
0.1
963
Tumor
0.1
661
Tumor
0.1
142
Normal
0.1
312
Normal
0.1
1027
Tumor
0.1
526
Normal
0.1
968
Normal
0.1
478
Normal
0.1
954
Normal
0.1
574
Normal
0.1
976
Normal
0.1
525
Tumor
0.0
468
Normal
0.0
232
Normal
0.0
355
Tumor
0.0
564
Normal
0.0
558
Normal
0.0
354
Normal
0.0
352
Normal
0.0
538
Normal
0.0
392
Normal
0.0
975
Tumor
0.0
368
Normal
0.0
384
Normal
0.0
268
Normal
0.0
572
Normal
0.0
744
Normal
0.0
221
Tumor
0.0
411
Tumor
0.0
357
Tumor
0.0
137
Tumor
-0.1
981
Tumor
-0.1
813
Tumor
-0.1
185
Tumor
-0.1
451
Tumor
-0.1
383
Tumor
-0.1
672
Normal
-0.1
445
Tumor
-0.1
953
Tumor
-0.1
161
Tumor
-0.1
393
Tumor
-0.1
863
Tumor
-0.1
636
Normal
-0.1
124
Normal
-0.1
444
Normal
-0.1
921
Tumor
-0.1
135
Tumor
-0.1
913
Tumor
-0.1
113
Tumor
-0.1
467
Tumor
-0.1
881
Tumor
-0.1
563
Tumor
-0.1
361
Tumor
-0.1
435
Tumor
-0.2
191
Tumor
-0.2
1025
Tumor
-0.2
473
Tumor
-0.2
311
Tumor
-0.2
267
Tumor
-0.2
433
Tumor
-0.2
557
Tumor
-0.2
455
Tumor
-0.2
641
Tumor
-0.2
537
Tumor
-0.2
385
Tumor
-0.3
715
Tumor
-0.3
387
Tumor
-0.3
925
Tumor
-0.3
447
Tumor
-0.3
375
Tumor
-0.3
535
Tumor
-0.3
271
Tumor
-0.3
227
Tumor
-0.3
697
Tumor
-0.3
665
Tumor
-0.3
223
Tumor
-0.3
533
Tumor
-0.3
443
Tumor
-0.3
297
Tumor
-0.3
617
Tumor
-0.4
983
Tumor
-0.4
957
Tumor
-0.4
231
Tumor
-0.4
463
Tumor
-0.4
1041
Tumor
-0.4
187
Tumor
-0.4
147
Tumor
-0.4
145
Tumor
-0.4
943
Tumor
-0.4
965
Tumor
-0.4
391
Tumor
-0.4
341
Tumor
-0.4
395
Tumor
-0.4
421
Tumor
-0.4
491
Tumor
-0.5
545
Tumor
-0.5
851
Tumor
-0.5
465
Tumor
-0.5
413
Tumor
-0.5
1021
Tumor
-0.5
817
Tumor
-0.5
967
Tumor
-0.5
125
Tumor
-0.5
131
Tumor
-0.5
171
Tumor
-0.5
257
Tumor
-0.6
285
Tumor
-0.6
363
Tumor
-0.6
647
Tumor
-0.6
283
Tumor
-0.6
877
Tumor
-0.6
517
Tumor
-0.6
713
Tumor
-0.7
343
Tumor
-0.7
567
Tumor
-0.7
427
Tumor
-0.8
815
Tumor
-0.9
671
Tumor
-0.9
573
Tumor
-1.0
743
Tumor
-1.0
351
Tumor
-1.0
367
Tumor
-1.1
331
Tumor
-1.1
425
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
