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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
331.7
nTPM
HPA Brain:
286.3
nTPM
GTEx:
331.7
nTPM
FANTOM5:
383.8
Scaled Tags Per Million
Pig:
349.7
nTPM
Mouse:
308.6
nTPM
Allen mouse:
5.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA001527
Antibody HPA005692
Antibody CAB009538
Glial cells
Low
Not detected
Not detected
Neuronal cells
Low
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
286.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 205.3
1911
Female, age 85, right hemisphere
311.0
1898
Male, age 80, left hemisphere
225.8
2621
Female, age 67, right hemisphere
193.1
2529
Female, age 94, left hemisphere
190.1
2148
Female, age 91, left hemisphere
164.0
1855
Male, age 76, left hemisphere
147.8
Dentate gyrus nTPM: 245.0
2530
Female, age 94, left hemisphere
476.8
2528
Male, age 74, both hemispheres
309.1
2010
Male, age 76, both hemispheres
234.2
2246
Female, age 85, both hemispheres
185.0
2531
Female, age 67, both hemispheres
147.3
1927
Female, age 91, both hemispheres
117.4
Entorhinal gyrus nTPM: 200.6
2117
Female, age 91, right hemisphere
335.4
2764
Male, age 80, right hemisphere
262.4
1938
Female, age 85, left hemisphere
190.7
1787
Male, age 76, left hemisphere
142.8
2613
Female, age 94, left hemisphere
139.3
2686
Male, age 75, right hemisphere
133.2
Hippocampus, CA1 nTPM: 176.5
1873
Female, age 85, both hemispheres
241.9
2527
Male, age 74, both hemispheres
230.7
2082
Female, age 91, right hemisphere
194.3
2749
Male, age 80, left hemisphere
171.2
2045
Male, age 76, both hemispheres
44.1
Hippocampus, CA2 nTPM: 261.5
2249
Male, age 74, both hemispheres
429.6
1963
Male, age 80, left hemisphere
359.6
1940
Female, age 85, left hemisphere
235.2
2437
Female, age 94, left hemisphere
222.5
2113
Female, age 91, right hemisphere
199.1
1892
Male, age 76, both hemispheres
123.2
Hippocampus, CA3 nTPM: 150.9
1891
Female, age 85, both hemispheres
354.8
1867
Male, age 76, both hemispheres
185.9
2436
Male, age 74, both hemispheres
180.8
2137
Male, age 80, left hemisphere
84.6
2620
Female, age 94, left hemisphere
60.6
2861
Female, age 67, both hemispheres
38.3
Parahippocampal cortex nTPM: 143.6
2532
Female, age 72, left hemisphere
220.9
1990
Female, age 91, right hemisphere
200.9
2692
Male, age 74, both hemispheres
176.5
1850
Male, age 80, both hemispheres
159.1
2018
Male, age 76, both hemispheres
148.3
1933
Female, age 85, both hemispheres
147.5
2245
Female, age 91, both hemispheres
124.3
2250
Female, age 67, right hemisphere
123.0
2693
Female, age 94, both hemispheres
102.1
2622
Female, age 67, right hemisphere
33.3
Perirhinal gyrus nTPM: 88.7
2521
Female, age 94, right hemisphere
108.7
2848
Male, age 76, right hemisphere
96.9
1847
Female, age 91, left hemisphere
88.1
1794
Male, age 80, right hemisphere
84.8
1841
Female, age 85, right hemisphere
65.2
Subiculum nTPM: 286.3
2042
Male, age 76, both hemispheres
451.3
1901
Male, age 80, both hemispheres
371.5
1977
Female, age 85, both hemispheres
319.8
2729
Female, age 91, right hemisphere
199.6
2438
Female, age 94, left hemisphere
190.1
2619
Male, age 74, both hemispheres
185.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
331.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 331.7
Samples: 197
Max nTPM: 1316.9
Min nTPM: 17.0
Std nTPM: 242.1
Median nTPM: 268.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
1316.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
1079.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
1049.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
1039.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
1022.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
988.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
923.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
883.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
868.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
857.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
842.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
790.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
777.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
757.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
750.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
721.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
715.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
685.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
671.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
668.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
642.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
639.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
636.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
605.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
604.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
590.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
577.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
558.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
554.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
552.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
550.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
545.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
542.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
538.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
533.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
516.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
514.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
513.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
509.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
506.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
495.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
494.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
491.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
490.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
490.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
486.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
482.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
477.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
473.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
471.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
462.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
449.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
445.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
438.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
431.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
417.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
415.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
413.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
412.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
408.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
407.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
403.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
401.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
396.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
396.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
392.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
391.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
384.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
381.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
368.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
366.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
366.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
364.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
363.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
346.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
343.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
342.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
341.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
341.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
330.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
323.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
323.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
318.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
316.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
307.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
303.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
299.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
299.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
291.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
291.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
286.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
285.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
279.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
279.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
278.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
275.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
270.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
269.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
268.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
266.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
263.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
256.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
256.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
254.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
249.3
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
243.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
242.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
242.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
241.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
241.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
237.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
234.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
234.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
232.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
232.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
231.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
226.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
221.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
220.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
219.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
206.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
206.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
205.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
204.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
203.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
198.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
196.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
187.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
173.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
173.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
172.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
172.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
171.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
171.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
170.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
168.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
162.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
161.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
161.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
158.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
157.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
153.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
153.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
152.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
151.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
149.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
149.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
148.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
147.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
145.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
142.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
140.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
137.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
136.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
136.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
132.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
131.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
129.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
127.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
125.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
125.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
125.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
122.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
122.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
119.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
118.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
118.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
116.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
113.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
111.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
109.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
105.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
105.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
99.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
91.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
90.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
88.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
87.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
81.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
80.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
77.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
77.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
76.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
74.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
66.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
65.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
63.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
63.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
59.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
55.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
48.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
47.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
42.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
32.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
29.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
26.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
17.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
308.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 154.6
Samples: 4
Max nTPM: 218.0
Min nTPM: 89.0
Sample A
Male
218.0
Sample B
Male
142.9
Sample C
Female
168.4
Sample D
Female
89.0
Hippocampal formation nTPM: 308.6
Samples: 4
Max nTPM: 445.0
Min nTPM: 217.6
Sample A
Male
217.6
Sample B
Male
253.2
Sample C
Female
445.0
Sample D
Female
318.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.