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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP48 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP48 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.4
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
161
Tumor
1.0
965
Tumor
0.8
663
Tumor
0.8
661
Tumor
0.8
427
Tumor
0.8
387
Tumor
0.8
883
Tumor
0.8
695
Tumor
0.7
425
Tumor
0.7
571
Tumor
0.7
283
Tumor
0.7
357
Tumor
0.6
313
Tumor
0.6
951
Tumor
0.6
367
Tumor
0.6
953
Tumor
0.5
573
Tumor
0.5
713
Tumor
0.5
413
Tumor
0.5
497
Tumor
0.4
385
Tumor
0.4
567
Tumor
0.4
391
Tumor
0.4
231
Tumor
0.4
865
Tumor
0.4
618
Normal
0.4
311
Tumor
0.4
617
Tumor
0.4
257
Tumor
0.4
925
Tumor
0.4
563
Tumor
0.3
112
Tumor
0.3
331
Tumor
0.3
383
Tumor
0.3
533
Tumor
0.3
351
Tumor
0.3
815
Tumor
0.3
724
Normal
0.3
343
Tumor
0.3
185
Tumor
0.3
467
Tumor
0.3
525
Tumor
0.3
444
Normal
0.2
1021
Tumor
0.2
817
Tumor
0.2
314
Normal
0.2
737
Tumor
0.2
983
Tumor
0.2
125
Tumor
0.2
123
Tumor
0.2
211
Tumor
0.2
135
Tumor
0.2
361
Tumor
0.2
192
Normal
0.2
278
Normal
0.2
513
Tumor
0.2
814
Normal
0.2
375
Tumor
0.2
978
Normal
0.2
465
Tumor
0.2
1013
Tumor
0.2
1027
Tumor
0.2
478
Normal
0.2
136
Normal
0.2
146
Normal
0.1
126
Normal
0.1
423
Tumor
0.1
113
Tumor
0.1
498
Normal
0.1
524
Normal
0.1
516
Normal
0.1
213
Tumor
0.1
268
Normal
0.1
447
Tumor
0.1
434
Normal
0.1
188
Normal
0.1
491
Tumor
0.1
917
Tumor
0.1
217
Tumor
0.1
685
Tumor
0.1
943
Tumor
0.1
395
Tumor
0.1
642
Normal
0.1
224
Normal
0.1
386
Normal
0.1
384
Normal
0.1
527
Tumor
0.1
627
Tumor
0.1
431
Tumor
0.1
744
Normal
0.1
411
Tumor
0.1
671
Tumor
0.1
823
Tumor
0.1
813
Tumor
0.1
388
Normal
0.1
473
Tumor
0.1
616
Normal
0.1
493
Tumor
0.1
312
Normal
0.0
218
Normal
0.0
414
Normal
0.0
436
Normal
0.0
743
Tumor
0.0
672
Normal
0.0
535
Tumor
0.0
394
Normal
0.0
536
Normal
0.0
721
Tumor
0.0
261
Tumor
0.0
297
Tumor
0.0
716
Normal
0.0
881
Tumor
0.0
327
Tumor
0.0
298
Normal
0.0
741
Tumor
0.0
352
Normal
0.0
877
Tumor
0.0
852
Normal
0.0
446
Normal
0.0
148
Normal
0.0
884
Normal
0.0
141
Tumor
0.0
1032
Normal
0.0
966
Normal
0.0
227
Tumor
0.0
277
Tumor
0.0
451
Tumor
0.0
365
Tumor
0.0
976
Normal
0.0
355
Tumor
0.0
416
Normal
0.0
428
Normal
0.0
482
Normal
0.0
923
Tumor
0.0
223
Tumor
0.0
111
Normal
0.0
376
Normal
0.0
481
Tumor
0.0
863
Tumor
0.0
262
Normal
0.0
138
Normal
0.0
132
Normal
0.0
777
Tumor
0.0
362
Normal
0.0
492
Normal
0.0
432
Normal
0.0
332
Normal
0.0
557
Tumor
0.0
433
Tumor
0.0
354
Normal
0.0
366
Normal
0.0
195
Tumor
0.0
818
Normal
0.0
462
Normal
0.0
424
Normal
0.0
341
Tumor
0.0
421
Tumor
0.0
455
Tumor
0.0
368
Normal
0.0
477
Tumor
0.0
415
Tumor
0.0
443
Tumor
0.0
874
Normal
-0.1
461
Tumor
-0.1
662
Normal
-0.1
857
Tumor
-0.1
396
Normal
-0.1
956
Normal
-0.1
722
Normal
-0.1
1042
Normal
-0.1
392
Normal
-0.1
982
Normal
-0.1
196
Normal
-0.1
363
Tumor
-0.1
514
Normal
-0.1
572
Normal
-0.1
162
Normal
-0.1
212
Normal
-0.1
483
Tumor
-0.1
487
Tumor
-0.1
727
Tumor
-0.1
124
Normal
-0.1
558
Normal
-0.1
755
Tumor
-0.1
714
Normal
-0.1
284
Normal
-0.1
864
Normal
-0.1
228
Normal
-0.1
171
Tumor
-0.1
258
Normal
-0.1
666
Normal
-0.1
272
Normal
-0.1
464
Normal
-0.1
488
Normal
-0.1
866
Normal
-0.1
358
Normal
-0.1
494
Normal
-0.1
435
Tumor
-0.1
868
Normal
-0.1
114
Normal
-0.1
975
Tumor
-0.1
353
Tumor
-0.1
882
Normal
-0.1
344
Normal
-0.1
426
Normal
-0.1
517
Tumor
-0.1
222
Normal
-0.1
528
Normal
-0.1
145
Tumor
-0.1
926
Normal
-0.1
356
Normal
-0.1
955
Tumor
-0.1
635
Tumor
-0.1
816
Normal
-0.1
422
Normal
-0.1
824
Normal
-0.1
186
Normal
-0.1
221
Tumor
-0.1
137
Tumor
-0.1
515
Tumor
-0.1
664
Normal
-0.1
696
Normal
-0.1
466
Normal
-0.1
412
Normal
-0.1
952
Normal
-0.1
267
Tumor
-0.1
142
Normal
-0.1
286
Normal
-0.1
756
Normal
-0.1
127
Tumor
-0.1
964
Normal
-0.1
878
Normal
-0.1
191
Tumor
-0.1
913
Tumor
-0.1
911
Tumor
-0.1
537
Tumor
-0.1
271
Tumor
-0.1
472
Normal
-0.2
968
Normal
-0.2
861
Tumor
-0.2
686
Normal
-0.2
574
Normal
-0.2
456
Normal
-0.2
534
Normal
-0.2
914
Normal
-0.2
564
Normal
-0.2
474
Normal
-0.2
1045
Tumor
-0.2
862
Normal
-0.2
172
Normal
-0.2
963
Tumor
-0.2
328
Normal
-0.2
463
Tumor
-0.2
232
Normal
-0.2
984
Normal
-0.2
1026
Normal
-0.2
944
Normal
-0.2
545
Tumor
-0.2
538
Normal
-0.2
778
Normal
-0.2
342
Normal
-0.2
1015
Tumor
-0.2
957
Tumor
-0.2
131
Tumor
-0.2
187
Tumor
-0.2
615
Tumor
-0.2
128
Normal
-0.2
912
Normal
-0.2
214
Normal
-0.2
1014
Normal
-0.2
1031
Tumor
-0.2
1022
Normal
-0.2
858
Normal
-0.2
958
Normal
-0.2
393
Tumor
-0.2
786
Normal
-0.2
918
Normal
-0.2
967
Tumor
-0.2
1016
Normal
-0.2
746
Normal
-0.2
873
Tumor
-0.2
468
Normal
-0.2
938
Normal
-0.2
471
Tumor
-0.2
954
Normal
-0.2
628
Normal
-0.3
636
Normal
-0.3
738
Normal
-0.3
648
Normal
-0.3
916
Normal
-0.3
715
Tumor
-0.3
568
Normal
-0.3
484
Normal
-0.3
647
Tumor
-0.3
867
Tumor
-0.3
742
Normal
-0.3
546
Normal
-0.3
364
Normal
-0.3
723
Tumor
-0.3
977
Tumor
-0.3
448
Normal
-0.3
445
Tumor
-0.3
1044
Normal
-0.3
698
Normal
-0.3
518
Normal
-0.3
147
Tumor
-0.3
922
Normal
-0.3
452
Normal
-0.3
526
Normal
-0.3
728
Normal
-0.3
851
Tumor
-0.3
937
Tumor
-0.3
1028
Normal
-0.3
697
Tumor
-0.3
285
Tumor
-0.4
785
Tumor
-0.4
1046
Normal
-0.4
981
Tumor
-0.4
1041
Tumor
-0.4
921
Tumor
-0.4
915
Tumor
-0.4
1043
Tumor
-0.4
641
Tumor
-0.5
924
Normal
-0.5
665
Tumor
-0.5
554
Normal
-0.5
523
Tumor
-0.5
553
Tumor
-0.5
1025
Tumor
-0.6
745
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
