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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LTBP4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
116.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
108.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
74.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
69.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
65.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
65.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
62.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
59.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
53.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
50.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
50.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
43.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
41.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
41.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
41.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
39.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
39.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
37.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
35.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
32.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LTBP4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.4
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
61.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
59.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
48.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
43.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
40.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
34.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
29.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
455
Tumor
2.0
185
Tumor
1.9
553
Tumor
1.6
975
Tumor
1.5
473
Tumor
1.5
823
Tumor
1.5
483
Tumor
1.4
925
Tumor
1.4
545
Tumor
1.4
471
Tumor
1.4
515
Tumor
1.4
141
Tumor
1.3
192
Normal
1.2
223
Tumor
1.2
493
Tumor
1.2
297
Tumor
1.2
785
Tumor
1.1
627
Tumor
1.1
525
Tumor
1.1
213
Tumor
1.1
921
Tumor
1.0
461
Tumor
1.0
363
Tumor
1.0
538
Normal
1.0
365
Tumor
1.0
963
Tumor
0.9
563
Tumor
0.9
881
Tumor
0.9
817
Tumor
0.9
715
Tumor
0.9
386
Normal
0.8
867
Tumor
0.8
421
Tumor
0.8
385
Tumor
0.8
195
Tumor
0.8
311
Tumor
0.7
137
Tumor
0.7
383
Tumor
0.7
395
Tumor
0.6
188
Normal
0.6
126
Normal
0.6
146
Normal
0.6
277
Tumor
0.6
1025
Tumor
0.6
536
Normal
0.6
444
Normal
0.6
161
Tumor
0.6
671
Tumor
0.6
433
Tumor
0.6
913
Tumor
0.6
375
Tumor
0.5
1045
Tumor
0.5
355
Tumor
0.5
1015
Tumor
0.5
477
Tumor
0.5
214
Normal
0.5
268
Normal
0.5
138
Normal
0.4
574
Normal
0.4
492
Normal
0.4
124
Normal
0.4
145
Tumor
0.4
857
Tumor
0.4
343
Tumor
0.4
327
Tumor
0.4
361
Tumor
0.4
467
Tumor
0.4
434
Normal
0.4
211
Tumor
0.3
917
Tumor
0.3
874
Normal
0.3
695
Tumor
0.3
423
Tumor
0.3
312
Normal
0.3
191
Tumor
0.3
341
Tumor
0.3
187
Tumor
0.3
923
Tumor
0.3
497
Tumor
0.3
415
Tumor
0.2
135
Tumor
0.2
813
Tumor
0.2
366
Normal
0.2
362
Normal
0.2
535
Tumor
0.2
353
Tumor
0.2
367
Tumor
0.2
221
Tumor
0.2
527
Tumor
0.2
672
Normal
0.2
617
Tumor
0.1
396
Normal
0.1
737
Tumor
0.1
977
Tumor
0.1
261
Tumor
0.1
641
Tumor
0.1
491
Tumor
0.1
394
Normal
0.1
615
Tumor
0.1
331
Tumor
0.1
412
Normal
0.1
952
Normal
0.1
524
Normal
0.1
278
Normal
0.1
344
Normal
0.1
456
Normal
0.1
224
Normal
0.1
642
Normal
0.1
697
Tumor
0.1
392
Normal
0.1
136
Normal
0.1
218
Normal
0.0
1028
Normal
0.0
498
Normal
0.0
976
Normal
0.0
148
Normal
0.0
354
Normal
0.0
271
Tumor
0.0
816
Normal
0.0
186
Normal
0.0
212
Normal
0.0
422
Normal
0.0
883
Tumor
0.0
368
Normal
0.0
662
Normal
0.0
478
Normal
-0.1
744
Normal
-0.1
463
Tumor
-0.1
172
Normal
-0.1
388
Normal
-0.1
474
Normal
-0.1
943
Tumor
-0.1
958
Normal
-0.1
262
Normal
-0.1
427
Tumor
-0.1
468
Normal
-0.1
636
Normal
-0.1
713
Tumor
-0.1
666
Normal
-0.1
628
Normal
-0.2
416
Normal
-0.2
915
Tumor
-0.2
332
Normal
-0.2
384
Normal
-0.2
777
Tumor
-0.2
924
Normal
-0.2
364
Normal
-0.2
466
Normal
-0.2
472
Normal
-0.2
411
Tumor
-0.2
127
Tumor
-0.2
431
Tumor
-0.2
956
Normal
-0.2
132
Normal
-0.2
162
Normal
-0.2
554
Normal
-0.2
447
Tumor
-0.2
982
Normal
-0.2
516
Normal
-0.2
861
Tumor
-0.2
228
Normal
-0.2
464
Normal
-0.2
111
Normal
-0.2
983
Tumor
-0.2
533
Tumor
-0.2
147
Tumor
-0.2
716
Normal
-0.2
313
Tumor
-0.2
272
Normal
-0.2
352
Normal
-0.3
298
Normal
-0.3
558
Normal
-0.3
114
Normal
-0.3
448
Normal
-0.3
664
Normal
-0.3
546
Normal
-0.3
387
Tumor
-0.3
721
Tumor
-0.3
878
Normal
-0.3
284
Normal
-0.3
426
Normal
-0.3
916
Normal
-0.3
376
Normal
-0.3
217
Tumor
-0.3
452
Normal
-0.3
618
Normal
-0.3
877
Tumor
-0.3
647
Tumor
-0.3
142
Normal
-0.3
443
Tumor
-0.3
222
Normal
-0.3
918
Normal
-0.3
1044
Normal
-0.3
482
Normal
-0.4
968
Normal
-0.4
446
Normal
-0.4
572
Normal
-0.4
914
Normal
-0.4
568
Normal
-0.4
462
Normal
-0.4
722
Normal
-0.4
424
Normal
-0.4
528
Normal
-0.4
232
Normal
-0.4
494
Normal
-0.4
686
Normal
-0.4
1031
Tumor
-0.4
926
Normal
-0.4
413
Tumor
-0.4
814
Normal
-0.4
534
Normal
-0.4
696
Normal
-0.4
966
Normal
-0.4
698
Normal
-0.5
755
Tumor
-0.5
328
Normal
-0.5
741
Tumor
-0.5
557
Tumor
-0.5
196
Normal
-0.5
746
Normal
-0.5
911
Tumor
-0.5
428
Normal
-0.5
922
Normal
-0.5
727
Tumor
-0.5
786
Normal
-0.5
526
Normal
-0.5
465
Tumor
-0.5
488
Normal
-0.5
873
Tumor
-0.5
314
Normal
-0.5
965
Tumor
-0.5
714
Normal
-0.5
356
Normal
-0.5
863
Tumor
-0.5
1022
Normal
-0.5
513
Tumor
-0.5
564
Normal
-0.5
984
Normal
-0.5
1026
Normal
-0.5
258
Normal
-0.5
852
Normal
-0.5
342
Normal
-0.5
868
Normal
-0.5
957
Tumor
-0.5
616
Normal
-0.6
484
Normal
-0.6
432
Normal
-0.6
1032
Normal
-0.6
882
Normal
-0.6
1042
Normal
-0.6
481
Tumor
-0.6
537
Tumor
-0.6
518
Normal
-0.6
414
Normal
-0.6
866
Normal
-0.6
286
Normal
-0.6
357
Tumor
-0.6
981
Tumor
-0.6
451
Tumor
-0.6
964
Normal
-0.6
864
Normal
-0.6
445
Tumor
-0.6
514
Normal
-0.6
128
Normal
-0.6
738
Normal
-0.6
112
Tumor
-0.7
358
Normal
-0.7
391
Tumor
-0.7
571
Tumor
-0.7
425
Tumor
-0.7
393
Tumor
-0.7
1041
Tumor
-0.7
884
Normal
-0.7
862
Normal
-0.7
824
Normal
-0.7
1046
Normal
-0.7
938
Normal
-0.8
818
Normal
-0.8
1043
Tumor
-0.8
436
Normal
-0.8
1016
Normal
-0.8
171
Tumor
-0.8
267
Tumor
-0.8
978
Normal
-0.8
1014
Normal
-0.8
131
Tumor
-0.8
685
Tumor
-0.8
937
Tumor
-0.8
231
Tumor
-0.9
665
Tumor
-0.9
1013
Tumor
-0.9
227
Tumor
-0.9
778
Normal
-0.9
745
Tumor
-0.9
728
Normal
-0.9
635
Tumor
-0.9
517
Tumor
-0.9
661
Tumor
-1.0
912
Normal
-1.0
944
Normal
-1.0
723
Tumor
-1.0
742
Normal
-1.0
435
Tumor
-1.0
1027
Tumor
-1.0
967
Tumor
-1.0
858
Normal
-1.1
283
Tumor
-1.1
523
Tumor
-1.1
573
Tumor
-1.1
648
Normal
-1.1
257
Tumor
-1.1
756
Normal
-1.1
953
Tumor
-1.1
955
Tumor
-1.2
113
Tumor
-1.2
487
Tumor
-1.2
954
Normal
-1.2
351
Tumor
-1.2
743
Tumor
-1.2
567
Tumor
-1.3
815
Tumor
-1.3
125
Tumor
-1.3
663
Tumor
-1.4
123
Tumor
-1.4
1021
Tumor
-1.4
951
Tumor
-1.4
285
Tumor
-1.5
851
Tumor
-1.6
865
Tumor
-1.6
724
Normal
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
