MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.4 nTPM
HPA Brain:36.7 nTPM
GTEx:5.4 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:18.6 nTPM
Mouse:17.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.8
2411 Female, age 72, unknown 37.0
1827 Male, age 72, unknown 36.3
1830 Male, age 51, unknown 35.6
2828 Female, age 72, unknown 35.2
1833 Male, age 53, unknown 34.9
2666 Male, age 74, left hemisphere 34.8
1870 Female, age 42, unknown 33.0
2219 Male, age 76, both hemispheres 31.1
2019 Male, age 18, unknown 30.5
2586 Male, age 75, left hemisphere 29.2
Dorsal raphe nucleus
nTPM: 34.9
2750 Male, age 76, both hemispheres 37.0
1828 Male, age 53, unknown 35.9
2047 Male, age 72, unknown 34.4
2016 Female, age 72, unknown 33.8
2298 Female, age 72, unknown 33.5
Inferior colliculus
nTPM: 31.8
2097 Female, age 72, unknown 34.3
1890 Male, age 53, unknown 32.0
1848 Female, age 42, unknown 31.7
2849 Male, age 72, unknown 29.1
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Periaquaductal grey, anterior
nTPM: 34.0
2502 Female, age 75, unknown 36.1
1947 Male, age 18, unknown 34.3
1795 Male, age 51, unknown 31.7
Periaquaductal grey, dorsal
nTPM: 33.0
2464 Female, age 72, unknown 36.1
1840 Male, age 53, unknown 33.3
1831 Male, age 72, unknown 31.8
2850 Male, age 76, both hemispheres 30.9
Periaquaductal grey, lateral
nTPM: 32.5
2053 Male, age 18, unknown 35.7
2140 Male, age 76, both hemispheres 31.0
2272 Male, age 74, both hemispheres 30.6
Pretectal area
nTPM: 32.8
2007 Male, age 72, unknown 34.6
2273 Male, age 74, both hemispheres 34.5
2224 Female, age 72, unknown 34.4
2407 Male, age 75, both hemispheres 34.2
1817 Female, age 42, unknown 33.8
2825 Male, age 18, unknown 32.5
1815 Male, age 53, unknown 32.4
2316 Male, age 76, right hemisphere 31.8
2667 Female, age 75, unknown 31.5
1944 Female, age 72, unknown 30.7
1816 Male, age 51, unknown 30.6
Red nucleus
nTPM: 33.8
2503 Female, age 72, unknown 38.1
1865 Male, age 51, unknown 36.8
1821 Female, age 72, unknown 35.7
1954 Female, age 42, unknown 35.7
2823 Male, age 76, right hemisphere 35.4
1904 Male, age 53, unknown 33.3
2769 Male, age 72, unknown 33.1
2584 Male, age 75, left hemisphere 32.7
2227 Male, age 72, unknown 32.4
2588 Male, age 74, left hemisphere 32.4
2785 Male, age 18, unknown 32.0
2725 Female, age 75, unknown 28.4
Substantia nigra
nTPM: 36.7
2241 Male, age 72, unknown 41.1
1851 Male, age 51, unknown 39.1
1916 Female, age 42, unknown 38.9
2699 Male, age 18, unknown 37.7
2590 Female, age 75, unknown 36.8
2583 Male, age 75, right hemisphere 36.2
2409 Female, age 72, unknown 36.1
2665 Male, age 74, both hemispheres 34.8
1941 Male, age 53, unknown 33.9
1889 Female, age 72, unknown 32.5
Superior colliculus
nTPM: 35.1
2668 Female, age 75, unknown 40.5
1796 Male, age 53, unknown 37.2
2664 Male, age 75, both hemispheres 36.5
2261 Male, age 18, unknown 35.8
1913 Female, age 42, unknown 35.5
1895 Male, age 76, right hemisphere 35.0
1995 Male, age 72, unknown 33.3
1839 Male, age 51, unknown 32.9
2587 Male, age 74, left hemisphere 32.5
2087 Female, age 72, unknown 31.5
Ventral tegmental area
nTPM: 34.5
2410 Female, age 72, unknown 36.1
2218 Male, age 76, both hemispheres 35.6
1942 Male, age 51, unknown 34.4
2223 Female, age 72, unknown 34.1
1915 Female, age 42, unknown 34.0
2021 Male, age 53, unknown 33.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.4
Samples: 139

Max nTPM: 8.6
Min nTPM: 2.5
Std nTPM: 1.2
Median nTPM: 5.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 8.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 8.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 8.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 8.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 8.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 8.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 8.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 7.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 7.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 7.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.3
Samples: 4

Max nTPM: 19.5
Min nTPM: 15.9
Sample A Female 17.6
Sample B Female 15.9
Sample C Male 16.1
Sample D Male 19.5
Midbrain
nTPM: 18.6
Samples: 4

Max nTPM: 22.1
Min nTPM: 17.0
Sample A Female 22.1
Sample B Female 17.0
Sample C Male 17.7
Sample D Male 17.5
Periaqueductal gray
nTPM: 15.4
Samples: 3

Max nTPM: 16.9
Min nTPM: 14.3
Sample B Female 16.9
Sample C Male 15.1
Sample D Male 14.3
Superior colliculi
nTPM: 16.8
Samples: 4

Max nTPM: 17.9
Min nTPM: 14.8
Sample A Female 17.5
Sample B Female 14.8
Sample C Male 17.0
Sample D Male 17.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 18.2
Min nTPM: 17.7
Sample A Male 17.9
Sample B Male 17.9
Sample C Female 18.2
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69028671 Antisense, RP_050316_01_G07, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org