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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GANAB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
84.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
268.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
261.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
245.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
245.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
243.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
219.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
219.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
218.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
214.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
214.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
209.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
205.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
202.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
201.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
198.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
188.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
185.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
185.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
182.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
181.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
180.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
178.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
177.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
177.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
177.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
176.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
172.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
171.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
170.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
170.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
170.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
168.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
167.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
165.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
165.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
163.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
163.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
160.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
158.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
157.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
157.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
156.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
156.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
155.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
154.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
153.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
153.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
152.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
152.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
150.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
150.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
150.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
149.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
148.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
148.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
147.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
145.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
145.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
145.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
141.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
140.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
140.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
139.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
139.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
138.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
138.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
138.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
138.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
137.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
136.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
136.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
136.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
136.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
134.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
134.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
134.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
133.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
132.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
132.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
132.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
131.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
131.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
131.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
131.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
129.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
129.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
127.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
125.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
124.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
123.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
122.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
121.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
121.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
120.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
120.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
120.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
119.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
119.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
119.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
119.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
119.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
119.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
119.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
118.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
117.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
116.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
115.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
115.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
115.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
115.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
114.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
114.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
114.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
114.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
114.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
113.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
113.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
113.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
113.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
112.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
110.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
110.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
109.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
109.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
108.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
107.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
107.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
107.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
107.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
106.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
106.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
105.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
105.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
105.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
105.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
104.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
104.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
104.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
103.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
103.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
102.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
102.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
101.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
101.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
100.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
100.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
99.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
98.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
98.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
98.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
98.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
98.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
97.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
96.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
96.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
96.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
96.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
96.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
96.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
95.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
95.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
95.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
95.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
94.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
94.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
94.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
94.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
93.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
92.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
91.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
91.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
90.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
90.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
90.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
89.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
88.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
86.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
86.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
86.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
85.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
85.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
84.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
84.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
84.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
83.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
82.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
82.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
82.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
81.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
81.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
81.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
81.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
80.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
79.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
79.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
77.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
76.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
75.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
75.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
74.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
74.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
74.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
73.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
73.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
72.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
72.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
72.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
71.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
71.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
71.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
71.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
70.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
70.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
70.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
69.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
68.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
68.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
67.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
66.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
66.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
65.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
64.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
64.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
63.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
62.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
61.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
61.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
60.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
60.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
59.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
59.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
58.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
58.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
57.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
56.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
55.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
54.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
54.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
52.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
52.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
49.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
44.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
43.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
41.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
41.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
40.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
40.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
40.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
39.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
38.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
36.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
31.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GANAB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
111.1
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
295.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
232.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
225.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
216.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
193.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
186.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
176.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
175.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
174.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
173.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
171.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
164.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
164.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
164.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
163.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
161.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
161.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
157.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
157.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
157.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
156.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
155.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
155.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
155.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
155.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
155.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
151.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
151.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
150.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
150.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
150.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
149.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
149.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
148.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
147.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
145.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
143.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
141.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
141.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
140.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
139.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
139.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
139.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
138.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
138.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
137.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
137.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
137.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
137.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
136.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
136.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
136.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
136.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
135.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
134.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
134.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
133.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
132.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
131.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
131.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
130.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
130.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
130.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
129.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
129.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
129.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
128.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
126.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
126.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
125.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
125.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
125.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
125.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
125.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
124.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
123.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
122.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
121.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
120.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
119.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
119.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
118.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
117.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
117.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
117.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
116.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
115.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
115.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
115.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
115.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
115.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
114.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
113.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
113.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
113.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
113.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
113.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
113.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
112.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
112.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
112.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
111.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
111.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
110.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
110.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
109.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
109.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
109.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
108.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
107.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
107.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
107.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
106.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
106.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
106.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
105.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
105.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
104.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
104.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
104.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
104.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
104.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
103.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
103.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
103.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
102.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
102.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
101.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
100.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
100.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
100.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
100.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
100.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
100.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
99.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
99.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
99.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
98.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
98.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
98.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
97.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
97.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
97.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
97.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
97.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
96.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
96.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
96.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
96.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
96.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
96.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
95.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
95.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
95.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
95.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
95.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
95.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
94.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
94.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
93.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
93.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
93.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
93.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
91.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
90.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
90.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
90.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
90.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
89.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
89.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
88.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
87.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
87.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
87.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
87.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
84.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
84.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
84.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
83.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
82.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
82.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
82.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
82.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
81.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
81.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
81.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
81.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
81.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
80.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
79.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
79.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
77.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
77.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
77.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
76.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
76.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
76.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
75.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
75.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
74.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
74.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
74.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
74.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
73.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
73.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
72.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
70.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
70.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
70.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
69.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
69.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
68.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
67.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
67.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
67.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
65.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
65.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
64.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
64.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
64.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
62.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
61.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
59.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
59.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
59.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
54.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
53.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
53.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
52.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
50.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
46.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
1.3
727
Tumor
0.7
615
Tumor
0.7
814
Normal
0.6
452
Normal
0.5
636
Normal
0.5
342
Normal
0.5
124
Normal
0.5
851
Tumor
0.5
186
Normal
0.5
744
Normal
0.5
648
Normal
0.5
172
Normal
0.5
354
Normal
0.5
358
Normal
0.4
392
Normal
0.4
387
Tumor
0.4
445
Tumor
0.4
376
Normal
0.4
426
Normal
0.4
196
Normal
0.4
125
Tumor
0.4
314
Normal
0.4
148
Normal
0.4
662
Normal
0.4
332
Normal
0.4
111
Normal
0.4
222
Normal
0.4
162
Normal
0.4
616
Normal
0.4
466
Normal
0.4
128
Normal
0.4
414
Normal
0.4
481
Tumor
0.4
742
Normal
0.4
815
Tumor
0.4
938
Normal
0.4
368
Normal
0.3
463
Tumor
0.3
422
Normal
0.3
394
Normal
0.3
388
Normal
0.3
232
Normal
0.3
435
Tumor
0.3
468
Normal
0.3
298
Normal
0.3
114
Normal
0.3
132
Normal
0.3
618
Normal
0.3
568
Normal
0.3
286
Normal
0.3
285
Tumor
0.3
1014
Normal
0.3
912
Normal
0.3
278
Normal
0.3
217
Tumor
0.3
857
Tumor
0.3
746
Normal
0.3
464
Normal
0.3
517
Tumor
0.3
878
Normal
0.3
195
Tumor
0.3
218
Normal
0.3
351
Tumor
0.3
365
Tumor
0.3
432
Normal
0.3
258
Normal
0.3
816
Normal
0.3
572
Normal
0.3
866
Normal
0.3
214
Normal
0.3
922
Normal
0.3
666
Normal
0.3
262
Normal
0.3
954
Normal
0.3
424
Normal
0.2
113
Tumor
0.2
862
Normal
0.2
1044
Normal
0.2
664
Normal
0.2
672
Normal
0.2
642
Normal
0.2
456
Normal
0.2
171
Tumor
0.2
738
Normal
0.2
1022
Normal
0.2
272
Normal
0.2
868
Normal
0.2
412
Normal
0.2
352
Normal
0.2
446
Normal
0.2
564
Normal
0.2
126
Normal
0.2
882
Normal
0.2
743
Tumor
0.2
366
Normal
0.2
436
Normal
0.2
1032
Normal
0.2
123
Tumor
0.2
786
Normal
0.2
467
Tumor
0.2
136
Normal
0.2
138
Normal
0.2
462
Normal
0.2
968
Normal
0.2
818
Normal
0.2
877
Tumor
0.2
778
Normal
0.2
312
Normal
0.2
188
Normal
0.2
628
Normal
0.2
356
Normal
0.2
344
Normal
0.2
635
Tumor
0.2
723
Tumor
0.2
268
Normal
0.2
428
Normal
0.2
944
Normal
0.2
714
Normal
0.2
142
Normal
0.2
926
Normal
0.2
362
Normal
0.2
112
Tumor
0.2
526
Normal
0.2
982
Normal
0.2
574
Normal
0.2
864
Normal
0.2
722
Normal
0.2
1016
Normal
0.2
227
Tumor
0.2
984
Normal
0.2
448
Normal
0.2
696
Normal
0.2
914
Normal
0.2
228
Normal
0.2
384
Normal
0.2
277
Tumor
0.2
488
Normal
0.2
686
Normal
0.2
147
Tumor
0.2
1026
Normal
0.1
824
Normal
0.1
911
Tumor
0.1
518
Normal
0.1
1046
Normal
0.1
698
Normal
0.1
883
Tumor
0.1
146
Normal
0.1
884
Normal
0.1
978
Normal
0.1
396
Normal
0.1
284
Normal
0.1
955
Tumor
0.1
964
Normal
0.1
482
Normal
0.1
534
Normal
0.1
413
Tumor
0.1
952
Normal
0.1
444
Normal
0.1
224
Normal
0.1
756
Normal
0.1
956
Normal
0.1
528
Normal
0.1
192
Normal
0.1
331
Tumor
0.1
127
Tumor
0.1
465
Tumor
0.1
852
Normal
0.1
976
Normal
0.1
665
Tumor
0.1
1043
Tumor
0.1
728
Normal
0.1
741
Tumor
0.1
554
Normal
0.1
257
Tumor
0.1
484
Normal
0.1
858
Normal
0.1
364
Normal
0.1
874
Normal
0.1
558
Normal
0.1
1028
Normal
0.1
755
Tumor
0.1
966
Normal
0.1
958
Normal
0.1
212
Normal
0.1
924
Normal
0.1
546
Normal
0.1
386
Normal
0.0
434
Normal
0.0
137
Tumor
0.0
721
Tumor
0.0
494
Normal
0.0
357
Tumor
0.0
451
Tumor
0.0
313
Tumor
0.0
328
Normal
0.0
918
Normal
0.0
514
Normal
0.0
472
Normal
0.0
393
Tumor
0.0
785
Tumor
0.0
557
Tumor
0.0
447
Tumor
0.0
716
Normal
0.0
538
Normal
0.0
185
Tumor
0.0
375
Tumor
0.0
145
Tumor
0.0
341
Tumor
0.0
161
Tumor
0.0
915
Tumor
0.0
1021
Tumor
0.0
191
Tumor
0.0
423
Tumor
0.0
361
Tumor
0.0
916
Normal
0.0
981
Tumor
0.0
863
Tumor
0.0
391
Tumor
0.0
671
Tumor
0.0
478
Normal
0.0
516
Normal
0.0
953
Tumor
0.0
524
Normal
0.0
536
Normal
0.0
1015
Tumor
0.0
627
Tumor
0.0
421
Tumor
-0.1
977
Tumor
-0.1
873
Tumor
-0.1
474
Normal
-0.1
367
Tumor
-0.1
963
Tumor
-0.1
433
Tumor
-0.1
416
Normal
-0.1
498
Normal
-0.1
223
Tumor
-0.1
647
Tumor
-0.1
1013
Tumor
-0.1
353
Tumor
-0.1
343
Tumor
-0.1
513
Tumor
-0.1
1042
Normal
-0.1
527
Tumor
-0.1
431
Tumor
-0.1
573
Tumor
-0.1
641
Tumor
-0.1
411
Tumor
-0.1
867
Tumor
-0.1
131
Tumor
-0.1
492
Normal
-0.1
327
Tumor
-0.1
491
Tumor
-0.1
261
Tumor
-0.2
921
Tumor
-0.2
745
Tumor
-0.2
967
Tumor
-0.2
187
Tumor
-0.2
271
Tumor
-0.2
865
Tumor
-0.2
563
Tumor
-0.2
567
Tumor
-0.2
617
Tumor
-0.2
537
Tumor
-0.2
395
Tumor
-0.2
937
Tumor
-0.2
523
Tumor
-0.2
221
Tumor
-0.2
487
Tumor
-0.2
661
Tumor
-0.2
443
Tumor
-0.2
737
Tumor
-0.2
713
Tumor
-0.2
715
Tumor
-0.2
455
Tumor
-0.2
923
Tumor
-0.2
913
Tumor
-0.2
695
Tumor
-0.2
297
Tumor
-0.2
1045
Tumor
-0.2
415
Tumor
-0.2
363
Tumor
-0.2
925
Tumor
-0.2
425
Tumor
-0.2
283
Tumor
-0.2
917
Tumor
-0.3
141
Tumor
-0.3
427
Tumor
-0.3
943
Tumor
-0.3
777
Tumor
-0.3
267
Tumor
-0.3
1027
Tumor
-0.3
1025
Tumor
-0.3
515
Tumor
-0.3
983
Tumor
-0.3
477
Tumor
-0.3
213
Tumor
-0.3
385
Tumor
-0.3
135
Tumor
-0.4
881
Tumor
-0.4
497
Tumor
-0.4
211
Tumor
-0.4
663
Tumor
-0.4
311
Tumor
-0.4
545
Tumor
-0.4
823
Tumor
-0.4
975
Tumor
-0.4
483
Tumor
-0.4
231
Tumor
-0.4
525
Tumor
-0.4
965
Tumor
-0.4
685
Tumor
-0.4
724
Normal
-0.5
493
Tumor
-0.5
817
Tumor
-0.5
383
Tumor
-0.5
951
Tumor
-0.5
1041
Tumor
-0.5
553
Tumor
-0.5
571
Tumor
-0.5
535
Tumor
-0.5
461
Tumor
-0.6
1031
Tumor
-0.6
471
Tumor
-0.6
697
Tumor
-0.6
355
Tumor
-0.6
533
Tumor
-0.8
861
Tumor
-0.8
957
Tumor
-0.8
473
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.