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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGBP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
153.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
86.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
78.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
77.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
74.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
72.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
68.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
66.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
66.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
59.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
57.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
57.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
55.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
51.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
50.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
50.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
50.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
49.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
48.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
48.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
47.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
45.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
44.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
44.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
43.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
41.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
41.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
40.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
39.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
39.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
38.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
34.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
29.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
21.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGBP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.4
Number of samples
231
Samples
Sample
Description
TPM
DO45285
0 years, male, NA, stage:3, alive, 480 days
75.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
69.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
63.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
62.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
62.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
59.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
58.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
55.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
52.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
50.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
46.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
40.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
37.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
36.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
36.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
34.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
33.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
31.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
27.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.0
1013
Tumor
0.9
913
Tumor
0.8
473
Tumor
0.8
411
Tumor
0.8
647
Tumor
0.8
171
Tumor
0.8
487
Tumor
0.7
1027
Tumor
0.7
231
Tumor
0.6
533
Tumor
0.6
777
Tumor
0.6
665
Tumor
0.6
211
Tumor
0.6
785
Tumor
0.6
861
Tumor
0.6
311
Tumor
0.6
685
Tumor
0.6
745
Tumor
0.6
661
Tumor
0.6
815
Tumor
0.6
351
Tumor
0.6
953
Tumor
0.5
545
Tumor
0.5
724
Normal
0.5
615
Tumor
0.5
393
Tumor
0.5
127
Tumor
0.5
917
Tumor
0.5
983
Tumor
0.5
391
Tumor
0.5
663
Tumor
0.5
557
Tumor
0.5
957
Tumor
0.5
527
Tumor
0.4
635
Tumor
0.4
112
Tumor
0.4
227
Tumor
0.4
695
Tumor
0.4
537
Tumor
0.4
571
Tumor
0.4
425
Tumor
0.4
125
Tumor
0.4
217
Tumor
0.4
813
Tumor
0.4
477
Tumor
0.3
567
Tumor
0.3
573
Tumor
0.3
493
Tumor
0.3
123
Tumor
0.3
285
Tumor
0.3
313
Tumor
0.3
525
Tumor
0.3
627
Tumor
0.3
865
Tumor
0.3
715
Tumor
0.3
671
Tumor
0.3
513
Tumor
0.3
951
Tumor
0.3
814
Normal
0.2
261
Tumor
0.2
126
Normal
0.2
267
Tumor
0.2
388
Normal
0.2
467
Tumor
0.2
385
Tumor
0.2
283
Tumor
0.2
224
Normal
0.2
852
Normal
0.2
455
Tumor
0.2
863
Tumor
0.2
755
Tumor
0.2
857
Tumor
0.2
741
Tumor
0.2
188
Normal
0.2
192
Normal
0.2
1042
Normal
0.2
963
Tumor
0.2
955
Tumor
0.2
881
Tumor
0.2
873
Tumor
0.2
943
Tumor
0.2
213
Tumor
0.2
491
Tumor
0.2
816
Normal
0.2
357
Tumor
0.1
395
Tumor
0.1
392
Normal
0.1
383
Tumor
0.1
138
Normal
0.1
131
Tumor
0.1
921
Tumor
0.1
427
Tumor
0.1
818
Normal
0.1
114
Normal
0.1
628
Normal
0.1
386
Normal
0.1
884
Normal
0.1
925
Tumor
0.1
355
Tumor
0.1
111
Normal
0.1
465
Tumor
0.1
137
Tumor
0.1
862
Normal
0.1
618
Normal
0.1
1021
Tumor
0.1
944
Normal
0.1
187
Tumor
0.1
975
Tumor
0.1
981
Tumor
0.1
1015
Tumor
0.1
978
Normal
0.1
195
Tumor
0.1
737
Tumor
0.1
136
Normal
0.1
431
Tumor
0.1
363
Tumor
0.1
415
Tumor
0.1
113
Tumor
0.1
617
Tumor
0.1
498
Normal
0.1
268
Normal
0.1
343
Tumor
0.1
212
Normal
0.1
727
Tumor
0.1
478
Normal
0.1
147
Tumor
0.1
515
Tumor
0.1
923
Tumor
0.1
186
Normal
0.1
636
Normal
0.1
697
Tumor
0.1
375
Tumor
0.1
358
Normal
0.1
426
Normal
0.1
141
Tumor
0.1
362
Normal
0.1
262
Normal
0.1
817
Tumor
0.1
824
Normal
0.1
446
Normal
0.1
461
Tumor
0.1
492
Normal
0.1
132
Normal
0.1
982
Normal
0.1
228
Normal
0.1
851
Tumor
0.1
451
Tumor
0.1
1025
Tumor
0.1
148
Normal
0.1
616
Normal
0.1
145
Tumor
0.1
786
Normal
0.1
868
Normal
0.1
444
Normal
0.1
918
Normal
0.1
387
Tumor
0.1
924
Normal
0.1
938
Normal
0.0
361
Tumor
0.0
1028
Normal
0.0
966
Normal
0.0
481
Tumor
0.0
728
Normal
0.0
297
Tumor
0.0
1016
Normal
0.0
328
Normal
0.0
568
Normal
0.0
956
Normal
0.0
484
Normal
0.0
365
Tumor
0.0
756
Normal
0.0
222
Normal
0.0
723
Tumor
0.0
926
Normal
0.0
286
Normal
0.0
124
Normal
0.0
463
Tumor
0.0
528
Normal
0.0
922
Normal
0.0
563
Tumor
0.0
456
Normal
0.0
964
Normal
0.0
662
Normal
0.0
672
Normal
0.0
432
Normal
0.0
882
Normal
0.0
874
Normal
0.0
433
Tumor
0.0
916
Normal
0.0
716
Normal
0.0
524
Normal
0.0
384
Normal
0.0
128
Normal
0.0
1046
Normal
0.0
867
Tumor
0.0
742
Normal
0.0
1022
Normal
0.0
984
Normal
0.0
284
Normal
0.0
494
Normal
0.0
664
Normal
0.0
641
Tumor
0.0
356
Normal
0.0
416
Normal
0.0
488
Normal
0.0
332
Normal
0.0
172
Normal
0.0
1014
Normal
0.0
394
Normal
0.0
911
Tumor
0.0
516
Normal
0.0
883
Tumor
0.0
368
Normal
0.0
864
Normal
0.0
523
Tumor
0.0
497
Tumor
0.0
218
Normal
0.0
162
Normal
0.0
366
Normal
0.0
353
Tumor
0.0
1041
Tumor
0.0
866
Normal
0.0
572
Normal
0.0
714
Normal
0.0
424
Normal
0.0
396
Normal
0.0
666
Normal
0.0
421
Tumor
0.0
518
Normal
0.0
713
Tumor
0.0
221
Tumor
0.0
1044
Normal
0.0
858
Normal
0.0
423
Tumor
0.0
191
Tumor
0.0
1032
Normal
0.0
135
Tumor
0.0
642
Normal
0.0
468
Normal
0.0
422
Normal
0.0
367
Tumor
0.0
434
Normal
0.0
536
Normal
0.0
958
Normal
0.0
878
Normal
0.0
146
Normal
0.0
185
Tumor
0.0
257
Tumor
0.0
436
Normal
0.0
574
Normal
0.0
447
Tumor
0.0
977
Tumor
0.0
744
Normal
0.0
648
Normal
0.0
472
Normal
0.0
428
Normal
-0.1
514
Normal
-0.1
462
Normal
-0.1
214
Normal
-0.1
526
Normal
-0.1
696
Normal
-0.1
413
Tumor
-0.1
952
Normal
-0.1
722
Normal
-0.1
196
Normal
-0.1
534
Normal
-0.1
161
Tumor
-0.1
954
Normal
-0.1
558
Normal
-0.1
352
Normal
-0.1
698
Normal
-0.1
1045
Tumor
-0.1
354
Normal
-0.1
464
Normal
-0.1
376
Normal
-0.1
482
Normal
-0.1
976
Normal
-0.1
445
Tumor
-0.1
483
Tumor
-0.1
344
Normal
-0.1
142
Normal
-0.1
435
Tumor
-0.1
912
Normal
-0.1
721
Tumor
-0.1
778
Normal
-0.1
443
Tumor
-0.1
271
Tumor
-0.1
914
Normal
-0.1
364
Normal
-0.1
968
Normal
-0.1
746
Normal
-0.1
554
Normal
-0.1
223
Tumor
-0.1
1026
Normal
-0.1
1043
Tumor
-0.1
564
Normal
-0.1
915
Tumor
-0.1
466
Normal
-0.1
1031
Tumor
-0.1
272
Normal
-0.1
414
Normal
-0.1
298
Normal
-0.1
314
Normal
-0.1
877
Tumor
-0.1
474
Normal
-0.2
686
Normal
-0.2
546
Normal
-0.2
232
Normal
-0.2
412
Normal
-0.2
535
Tumor
-0.2
342
Normal
-0.2
738
Normal
-0.2
258
Normal
-0.2
538
Normal
-0.2
823
Tumor
-0.2
278
Normal
-0.2
452
Normal
-0.2
277
Tumor
-0.2
341
Tumor
-0.2
327
Tumor
-0.2
312
Normal
-0.2
471
Tumor
-0.2
448
Normal
-0.3
937
Tumor
-0.3
553
Tumor
-0.3
517
Tumor
-0.3
967
Tumor
-0.4
743
Tumor
-0.5
331
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
