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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MMP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
949.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
698.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
145.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
129.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
117.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
85.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
69.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
64.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
64.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
62.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
62.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
58.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
55.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
53.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
49.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
46.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
44.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
44.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
36.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
34.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
30.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MMP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.8
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
331.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
142.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
134.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
98.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
79.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
78.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
73.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
67.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
67.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
65.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
65.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
65.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
61.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
57.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
57.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
56.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
56.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
55.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
49.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
47.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
45.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
40.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
40.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
38.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
2.7
171
Tumor
2.5
161
Tumor
1.8
375
Tumor
1.6
185
Tumor
1.6
311
Tumor
1.4
343
Tumor
1.4
671
Tumor
1.4
917
Tumor
1.2
355
Tumor
1.1
147
Tumor
1.1
877
Tumor
1.1
743
Tumor
1.1
363
Tumor
1.1
192
Normal
1.0
817
Tumor
0.9
383
Tumor
0.9
813
Tumor
0.9
557
Tumor
0.9
331
Tumor
0.9
444
Normal
0.9
463
Tumor
0.8
697
Tumor
0.8
297
Tumor
0.8
421
Tumor
0.8
975
Tumor
0.7
713
Tumor
0.6
223
Tumor
0.6
491
Tumor
0.6
395
Tumor
0.6
455
Tumor
0.6
135
Tumor
0.5
545
Tumor
0.5
535
Tumor
0.5
268
Normal
0.5
277
Tumor
0.5
385
Tumor
0.5
112
Tumor
0.5
213
Tumor
0.5
211
Tumor
0.5
492
Normal
0.5
982
Normal
0.4
814
Normal
0.4
943
Tumor
0.4
145
Tumor
0.4
113
Tumor
0.4
1042
Normal
0.4
367
Tumor
0.4
473
Tumor
0.4
536
Normal
0.4
525
Tumor
0.3
141
Tumor
0.3
125
Tumor
0.3
433
Tumor
0.3
467
Tumor
0.3
916
Normal
0.3
963
Tumor
0.3
958
Normal
0.3
447
Tumor
0.3
386
Normal
0.3
124
Normal
0.3
483
Tumor
0.3
461
Tumor
0.3
857
Tumor
0.3
332
Normal
0.3
365
Tumor
0.3
137
Tumor
0.3
538
Normal
0.2
284
Normal
0.2
647
Tumor
0.2
228
Normal
0.2
573
Tumor
0.2
635
Tumor
0.2
312
Normal
0.2
823
Tumor
0.2
368
Normal
0.2
224
Normal
0.2
567
Tumor
0.2
427
Tumor
0.2
146
Normal
0.1
1032
Normal
0.1
1028
Normal
0.1
388
Normal
0.1
478
Normal
0.1
493
Tumor
0.1
918
Normal
0.1
138
Normal
0.1
464
Normal
0.1
516
Normal
0.1
364
Normal
0.1
883
Tumor
0.1
976
Normal
0.1
342
Normal
0.1
298
Normal
0.1
191
Tumor
0.1
354
Normal
0.0
921
Tumor
0.0
448
Normal
0.0
344
Normal
0.0
852
Normal
0.0
497
Tumor
0.0
922
Normal
0.0
278
Normal
0.0
413
Tumor
0.0
661
Tumor
0.0
1046
Normal
0.0
498
Normal
0.0
123
Tumor
0.0
425
Tumor
0.0
1045
Tumor
0.0
881
Tumor
0.0
313
Tumor
0.0
456
Normal
0.0
434
Normal
0.0
391
Tumor
0.0
471
Tumor
-0.1
698
Normal
-0.1
328
Normal
-0.1
114
Normal
-0.1
923
Tumor
-0.1
341
Tumor
-0.1
515
Tumor
-0.1
968
Normal
-0.1
926
Normal
-0.1
452
Normal
-0.1
217
Tumor
-0.1
956
Normal
-0.1
196
Normal
-0.1
746
Normal
-0.1
416
Normal
-0.1
132
Normal
-0.1
1044
Normal
-0.1
392
Normal
-0.1
924
Normal
-0.1
553
Tumor
-0.1
271
Tumor
-0.1
195
Tumor
-0.1
387
Tumor
-0.1
126
Normal
-0.1
394
Normal
-0.1
517
Tumor
-0.1
396
Normal
-0.2
366
Normal
-0.2
187
Tumor
-0.2
965
Tumor
-0.2
744
Normal
-0.2
414
Normal
-0.2
214
Normal
-0.2
874
Normal
-0.2
443
Tumor
-0.2
524
Normal
-0.2
1025
Tumor
-0.2
422
Normal
-0.2
816
Normal
-0.2
136
Normal
-0.2
415
Tumor
-0.2
352
Normal
-0.2
128
Normal
-0.2
571
Tumor
-0.2
715
Tumor
-0.2
227
Tumor
-0.2
474
Normal
-0.2
212
Normal
-0.3
785
Tumor
-0.3
314
Normal
-0.3
272
Normal
-0.3
362
Normal
-0.3
327
Tumor
-0.3
665
Tumor
-0.3
412
Normal
-0.3
477
Tumor
-0.3
428
Normal
-0.3
142
Normal
-0.3
357
Tumor
-0.3
351
Tumor
-0.3
537
Tumor
-0.3
983
Tumor
-0.3
286
Normal
-0.3
356
Normal
-0.3
435
Tumor
-0.3
353
Tumor
-0.3
861
Tumor
-0.3
424
Normal
-0.3
131
Tumor
-0.3
361
Tumor
-0.3
938
Normal
-0.4
267
Tumor
-0.4
494
Normal
-0.4
426
Normal
-0.4
358
Normal
-0.4
431
Tumor
-0.4
384
Normal
-0.4
468
Normal
-0.4
858
Normal
-0.4
127
Tumor
-0.4
218
Normal
-0.4
663
Tumor
-0.4
952
Normal
-0.4
432
Normal
-0.4
257
Tumor
-0.4
445
Tumor
-0.4
472
Normal
-0.4
488
Normal
-0.5
878
Normal
-0.5
984
Normal
-0.5
964
Normal
-0.5
262
Normal
-0.5
527
Tumor
-0.5
642
Normal
-0.5
111
Normal
-0.5
482
Normal
-0.5
866
Normal
-0.5
221
Tumor
-0.5
966
Normal
-0.5
526
Normal
-0.5
222
Normal
-0.5
914
Normal
-0.5
641
Tumor
-0.5
446
Normal
-0.5
778
Normal
-0.5
627
Tumor
-0.5
534
Normal
-0.5
915
Tumor
-0.5
481
Tumor
-0.5
487
Tumor
-0.5
981
Tumor
-0.5
451
Tumor
-0.5
1014
Normal
-0.5
436
Normal
-0.5
1043
Tumor
-0.5
546
Normal
-0.5
261
Tumor
-0.5
393
Tumor
-0.5
376
Normal
-0.6
574
Normal
-0.6
818
Normal
-0.6
978
Normal
-0.6
484
Normal
-0.6
937
Tumor
-0.6
466
Normal
-0.6
957
Tumor
-0.6
955
Tumor
-0.6
1016
Normal
-0.6
554
Normal
-0.6
884
Normal
-0.6
741
Tumor
-0.6
786
Normal
-0.6
533
Tumor
-0.6
967
Tumor
-0.6
755
Tumor
-0.6
662
Normal
-0.6
756
Normal
-0.6
925
Tumor
-0.6
518
Normal
-0.6
423
Tumor
-0.6
1026
Normal
-0.6
615
Tumor
-0.7
867
Tumor
-0.7
1041
Tumor
-0.7
523
Tumor
-0.7
721
Tumor
-0.7
188
Normal
-0.7
727
Tumor
-0.7
258
Normal
-0.7
1015
Tumor
-0.7
462
Normal
-0.7
617
Tumor
-0.7
1031
Tumor
-0.7
685
Tumor
-0.7
913
Tumor
-0.7
954
Normal
-0.7
742
Normal
-0.8
737
Tumor
-0.8
568
Normal
-0.8
944
Normal
-0.8
863
Tumor
-0.8
513
Tumor
-0.8
882
Normal
-0.8
951
Tumor
-0.8
953
Tumor
-0.8
738
Normal
-0.8
465
Tumor
-0.8
851
Tumor
-0.8
514
Normal
-0.8
722
Normal
-0.8
745
Tumor
-0.8
865
Tumor
-0.8
716
Normal
-0.8
824
Normal
-0.8
873
Tumor
-0.9
686
Normal
-0.9
868
Normal
-0.9
815
Tumor
-0.9
558
Normal
-0.9
411
Tumor
-0.9
912
Normal
-0.9
666
Normal
-0.9
628
Normal
-1.0
563
Tumor
-1.0
714
Normal
-1.0
231
Tumor
-1.0
777
Tumor
-1.0
232
Normal
-1.0
911
Tumor
-1.0
664
Normal
-1.0
977
Tumor
-1.0
696
Normal
-1.1
672
Normal
-1.1
728
Normal
-1.1
528
Normal
-1.1
1022
Normal
-1.1
864
Normal
-1.1
724
Normal
-1.1
618
Normal
-1.1
636
Normal
-1.2
695
Tumor
-1.2
1013
Tumor
-1.2
862
Normal
-1.2
285
Tumor
-1.3
572
Normal
-1.3
564
Normal
-1.4
648
Normal
-1.4
723
Tumor
-1.4
1021
Tumor
-2.0
616
Normal
-2.0
1027
Tumor
-2.0
148
Normal
-2.1
172
Normal
-10.1
162
Normal
N/A
186
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
