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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
3302.1
nTPM
FANTOM5:
1589.7
Scaled Tags Per Million
Pig:
1667.6
nTPM
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3302.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 2475.5
2301
Female, age 85, both hemispheres
2958.0
2090
Male, age 80, both hemispheres
2672.8
2188
Female, age 91, both hemispheres
2550.0
1984
Male, age 76, both hemispheres
1721.1
Dorsal cochlear nucleus nTPM: 2312.5
2370
Male, age 61, both hemispheres
2748.8
2187
Female, age 91, both hemispheres
2402.6
2378
Male, age 80, both hemispheres
2343.9
2802
Male, age 74, right hemisphere
2225.0
2058
Male, age 76, both hemispheres
1842.2
Dorsal tegmental nucleus nTPM: 3302.1
2358
Male, age 61, both hemispheres
6679.3
2083
Male, age 80, both hemispheres
2446.6
2326
Male, age 74, both hemispheres
2251.0
1936
Male, age 76, left hemisphere
1831.3
Dorsolateral tegmental area nTPM: 3004.8
2337
Male, age 61, both hemispheres
6764.8
2654
Male, age 80, both hemispheres
2422.1
2751
Female, age 85, both hemispheres
2188.0
2360
Male, age 74, both hemispheres
1986.2
2141
Male, age 76, both hemispheres
1662.7
Kolliker-Fuse nucleus nTPM: 2459.8
2315
Male, age 76, right hemisphere
2777.9
2793
Female, age 91, left hemisphere
2466.5
2163
Male, age 80, both hemispheres
2135.0
Lateral lemniscal nuclei nTPM: 1791.0
2746
Female, age 85, left hemisphere
2704.0
2320
Female, age 91, left hemisphere
1756.9
2036
Male, age 80, both hemispheres
1542.4
2169
Male, age 76, both hemispheres
1494.9
2453
Male, age 74, right hemisphere
1456.8
Lateral parabrachial nucleus nTPM: 2809.1
2792
Male, age 76, both hemispheres
3522.3
2790
Male, age 61, both hemispheres
3280.8
2013
Male, age 80, both hemispheres
2394.4
2139
Female, age 85, right hemisphere
2039.1
Lateral vestibular nucleus nTPM: 2405.9
2311
Male, age 80, both hemispheres
3002.4
2184
Male, age 76, both hemispheres
1809.3
Locus coeruleus nTPM: 1630.7
2162
Male, age 80, both hemispheres
1920.6
2720
Male, age 74, both hemispheres
1896.7
2123
Female, age 91, both hemispheres
1695.1
2317
Female, age 72, unknown
1631.8
2014
Male, age 55, unknown
1525.9
1980
Male, age 76, both hemispheres
1394.6
2788
Male, age 74, unknown
1350.2
Medial parabrachial nucleus nTPM: 2491.8
2170
Female, age 91, both hemispheres
3033.2
2156
Male, age 61, both hemispheres
2875.7
2854
Male, age 80, both hemispheres
2438.2
2463
Female, age 85, right hemisphere
2167.5
2786
Male, age 76, both hemispheres
1944.6
Medial periolivary nuclei nTPM: 1816.5
2081
Male, age 80, both hemispheres
2764.4
2458
Female, age 91, both hemispheres
1878.2
2791
Male, age 74, right hemisphere
1702.0
2063
Male, age 76, both hemispheres
1507.9
2171
Female, age 85, both hemispheres
1230.2
Motor facial nucleus nTPM: 1637.9
2697
Female, age 85, both hemispheres
2004.7
2126
Male, age 61, both hemispheres
1944.9
2365
Male, age 74, right hemisphere
1721.0
2795
Female, age 91, both hemispheres
1620.7
2062
Male, age 76, both hemispheres
1348.5
2327
Male, age 80, both hemispheres
1187.5
Motor trigeminal nucleus nTPM: 2116.2
2335
Male, age 61, both hemispheres
2886.5
2321
Female, age 91, both hemispheres
2204.9
2079
Male, age 80, both hemispheres
1958.0
2560
Male, age 74, both hemispheres
1800.4
2309
Male, age 76, both hemispheres
1731.2
Nuclei of the trapezoid body nTPM: 1377.0
2166
Male, age 80, both hemispheres
1772.6
1983
Male, age 76, both hemispheres
1627.6
2368
Female, age 91, both hemispheres
1494.6
2735
Female, age 85, both hemispheres
1006.8
2159
Male, age 61, both hemispheres
983.5
Nucleus raphe magnus nTPM: 1514.4
2051
Male, age 76, both hemispheres
2687.0
2459
Female, age 91, both hemispheres
1613.6
2328
Male, age 80, both hemispheres
1472.1
2455
Male, age 74, both hemispheres
1444.8
2172
Female, age 85, both hemispheres
981.9
2160
Male, age 61, both hemispheres
887.4
Paramedian reticular nucleus nTPM: 1888.4
2052
Male, age 76, both hemispheres
2268.1
2057
Male, age 80, both hemispheres
1911.2
2313
Male, age 61, both hemispheres
1852.7
2050
Female, age 85, both hemispheres
1521.7
Pedunculopontine tegmental nucleus nTPM: 2499.0
2338
Male, age 61, both hemispheres
4012.7
2334
Male, age 80, both hemispheres
2290.3
1921
Female, age 85, both hemispheres
1194.2
Pontine nuclei nTPM: 1688.0
2115
Male, age 80, left hemisphere
2827.7
2319
Female, age 91, both hemispheres
2358.5
2109
Female, age 72, unknown
1824.5
1968
Male, age 76, left hemisphere
1573.2
2454
Male, age 74, left hemisphere
1506.1
1863
Male, age 55, unknown
1374.7
2787
Female, age 85, both hemispheres
1212.7
2727
Male, age 61, right hemisphere
826.4
Pontine raphe nucleus nTPM: 1505.2
2853
Male, age 76, midline
1705.9
2122
Female, age 85, midline
1304.5
Posteroventral cochlear nucleus nTPM: 2526.2
2135
Female, age 91, both hemispheres
3090.4
2341
Male, age 80, both hemispheres
3048.4
2371
Male, age 61, both hemispheres
3007.6
2070
Male, age 76, both hemispheres
1952.5
2752
Female, age 85, both hemispheres
1532.3
Principal sensory trigeminal nucleus nTPM: 1601.1
2367
Female, age 91, left hemisphere
2095.3
2324
Male, age 76, both hemispheres
1898.5
2008
Male, age 80, left hemisphere
1252.8
2158
Male, age 61, both hemispheres
1157.9
Reticular pontine nucleus, caudal nTPM: 1767.9
2092
Male, age 76, both hemispheres
2015.4
2559
Male, age 74, both hemispheres
1952.2
2457
Female, age 91, both hemispheres
1811.8
2332
Male, age 80, right hemisphere
1292.1
Reticular pontine nucleus, oral nTPM: 1880.0
1939
Male, age 80, both hemispheres
2189.7
2167
Male, age 76, both hemispheres
2016.0
2366
Female, age 91, both hemispheres
1922.1
2361
Male, age 74, both hemispheres
1699.1
2012
Female, age 85, both hemispheres
1573.3
Reticulotegmental nucleus nTPM: 1989.5
2333
Male, age 80, both hemispheres
2195.0
2452
Male, age 74, both hemispheres
2192.2
2322
Female, age 91, both hemispheres
1898.5
2325
Male, age 76, both hemispheres
1672.1
Spinal trigeminal nucleus, oral nTPM: 1739.7
2164
Male, age 80, both hemispheres
2161.9
1978
Male, age 76, both hemispheres
1712.0
2737
Female, age 85, both hemispheres
1345.2
Subcoeruleus area nTPM: 1913.5
2369
Female, age 85, left hemisphere
2396.3
2451
Male, age 74, both hemispheres
2267.4
1958
Male, age 80, both hemispheres
1786.2
2089
Male, age 76, left hemisphere
1649.2
2323
Female, age 91, left hemisphere
1468.4
Superior olive nTPM: 1639.4
2020
Male, age 76, both hemispheres
1978.7
2561
Female, age 91, both hemispheres
1920.3
2364
Male, age 74, right hemisphere
1789.3
2329
Male, age 80, right hemisphere
1461.4
1875
Female, age 85, both hemispheres
1047.2
Ventral periolivary nuclei nTPM: 1675.2
2023
Male, age 76, both hemispheres
2217.2
2794
Female, age 91, left hemisphere
1725.8
2165
Male, age 80, both hemispheres
1510.9
2130
Female, age 85, both hemispheres
1247.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 2139.6
2359
Male, age 61, both hemispheres
3404.4
2161
Male, age 80, both hemispheres
2436.1
2840
Female, age 85, both hemispheres
2129.2
2456
Female, age 91, both hemispheres
1779.0
1959
Male, age 76, both hemispheres
1620.0
2449
Male, age 74, both hemispheres
1468.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.