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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTC39A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
113.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
102.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
93.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
78.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
71.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
71.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
57.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
55.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
55.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
41.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTC39A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.8
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
78.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
573
Tumor
2.3
525
Tumor
2.0
125
Tumor
2.0
395
Tumor
1.8
557
Tumor
1.7
297
Tumor
1.7
513
Tumor
1.5
533
Tumor
1.4
527
Tumor
1.3
277
Tumor
1.2
953
Tumor
1.2
951
Tumor
1.2
545
Tumor
1.2
221
Tumor
1.2
1027
Tumor
1.2
567
Tumor
1.1
537
Tumor
1.1
355
Tumor
1.1
393
Tumor
1.1
1021
Tumor
1.1
937
Tumor
0.9
331
Tumor
0.9
342
Normal
0.9
817
Tumor
0.9
367
Tumor
0.9
571
Tumor
0.8
312
Normal
0.8
851
Tumor
0.8
113
Tumor
0.8
311
Tumor
0.7
375
Tumor
0.7
327
Tumor
0.7
195
Tumor
0.7
823
Tumor
0.7
128
Normal
0.7
332
Normal
0.6
314
Normal
0.6
298
Normal
0.6
114
Normal
0.6
313
Tumor
0.5
671
Tumor
0.5
127
Tumor
0.5
647
Tumor
0.5
1013
Tumor
0.5
344
Normal
0.4
124
Normal
0.4
925
Tumor
0.4
365
Tumor
0.4
491
Tumor
0.4
957
Tumor
0.4
278
Normal
0.4
358
Normal
0.4
746
Normal
0.4
914
Normal
0.4
111
Normal
0.4
126
Normal
0.4
384
Normal
0.4
368
Normal
0.3
366
Normal
0.3
363
Tumor
0.3
383
Tumor
0.3
564
Normal
0.3
912
Normal
0.3
361
Tumor
0.3
663
Tumor
0.3
376
Normal
0.2
568
Normal
0.2
123
Tumor
0.2
574
Normal
0.2
385
Tumor
0.2
357
Tumor
0.2
394
Normal
0.2
112
Tumor
0.2
391
Tumor
0.2
878
Normal
0.2
362
Normal
0.2
572
Normal
0.2
223
Tumor
0.2
882
Normal
0.2
983
Tumor
0.2
642
Normal
0.1
388
Normal
0.1
956
Normal
0.1
857
Tumor
0.1
352
Normal
0.1
884
Normal
0.1
666
Normal
0.1
286
Normal
0.1
354
Normal
0.1
387
Tumor
0.1
328
Normal
0.1
661
Tumor
0.1
228
Normal
0.1
786
Normal
0.1
721
Tumor
0.1
386
Normal
0.0
982
Normal
0.0
745
Tumor
0.0
558
Normal
0.0
911
Tumor
0.0
618
Normal
0.0
493
Tumor
0.0
1025
Tumor
0.0
615
Tumor
0.0
672
Normal
0.0
628
Normal
0.0
416
Normal
-0.1
756
Normal
-0.1
954
Normal
-0.1
396
Normal
-0.1
695
Tumor
-0.1
686
Normal
-0.1
392
Normal
-0.1
534
Normal
-0.1
662
Normal
-0.1
224
Normal
-0.1
283
Tumor
-0.1
616
Normal
-0.1
921
Tumor
-0.1
553
Tumor
-0.1
641
Tumor
-0.1
285
Tumor
-0.2
1041
Tumor
-0.2
636
Normal
-0.2
284
Normal
-0.2
546
Normal
-0.2
191
Tumor
-0.2
976
Normal
-0.2
648
Normal
-0.2
627
Tumor
-0.2
964
Normal
-0.2
563
Tumor
-0.2
227
Tumor
-0.2
915
Tumor
-0.3
528
Normal
-0.3
943
Tumor
-0.3
923
Tumor
-0.3
411
Tumor
-0.3
696
Normal
-0.3
526
Normal
-0.3
1016
Normal
-0.3
364
Normal
-0.3
665
Tumor
-0.3
944
Normal
-0.4
714
Normal
-0.4
722
Normal
-0.4
824
Normal
-0.4
212
Normal
-0.4
1042
Normal
-0.4
554
Normal
-0.4
196
Normal
-0.4
777
Tumor
-0.4
813
Tumor
-0.4
415
Tumor
-0.4
214
Normal
-0.4
356
Normal
-0.4
664
Normal
-0.4
858
Normal
-0.4
952
Normal
-0.5
955
Tumor
-0.5
538
Normal
-0.5
917
Tumor
-0.5
926
Normal
-0.5
1022
Normal
-0.5
1015
Tumor
-0.5
222
Normal
-0.5
1026
Normal
-0.5
1032
Normal
-0.5
716
Normal
-0.5
924
Normal
-0.5
353
Tumor
-0.5
514
Normal
-0.5
818
Normal
-0.5
978
Normal
-0.5
412
Normal
-0.5
852
Normal
-0.5
968
Normal
-0.5
881
Tumor
-0.5
211
Tumor
-0.5
981
Tumor
-0.6
778
Normal
-0.6
913
Tumor
-0.6
213
Tumor
-0.6
918
Normal
-0.6
877
Tumor
-0.6
635
Tumor
-0.6
217
Tumor
-0.6
977
Tumor
-0.6
938
Normal
-0.6
341
Tumor
-0.6
1014
Normal
-0.6
922
Normal
-0.6
815
Tumor
-0.7
192
Normal
-0.7
966
Normal
-0.7
958
Normal
-0.7
516
Normal
-0.7
1031
Tumor
-0.7
617
Tumor
-0.7
965
Tumor
-0.7
518
Normal
-0.8
343
Tumor
-0.8
916
Normal
-0.8
685
Tumor
-0.8
524
Normal
-0.8
218
Normal
-0.8
814
Normal
-0.8
975
Tumor
-0.8
351
Tumor
-0.8
483
Tumor
-0.8
517
Tumor
-0.8
883
Tumor
-0.8
984
Normal
-0.8
515
Tumor
-0.8
816
Normal
-0.9
488
Normal
-0.9
494
Normal
-1.0
1028
Normal
-1.1
755
Tumor
-1.1
967
Tumor
-1.1
715
Tumor
-1.1
785
Tumor
-1.1
523
Tumor
-1.2
487
Tumor
-1.2
713
Tumor
-1.2
484
Normal
-1.2
498
Normal
-1.2
963
Tumor
-1.3
492
Normal
-1.6
497
Tumor
-1.7
471
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
473
Tumor
N/A
232
Normal
N/A
474
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
741
Tumor
N/A
862
Normal
N/A
742
Normal
N/A
863
Tumor
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
697
Tumor
N/A
456
Normal
N/A
698
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
