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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
87.9
nTPM
HPA Brain:
86.7
nTPM
GTEx:
87.9
nTPM
FANTOM5:
54.5
Scaled Tags Per Million
Pig:
63.2
nTPM
Mouse:
68.8
nTPM
Allen mouse:
3.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
86.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 59.9
2411
Female, age 72, unknown
80.1
1827
Male, age 72, unknown
66.8
2828
Female, age 72, unknown
63.1
2666
Male, age 74, left hemisphere
60.5
1833
Male, age 53, unknown
57.0
1870
Female, age 42, unknown
57.0
2019
Male, age 18, unknown
56.8
1830
Male, age 51, unknown
53.6
2586
Male, age 75, left hemisphere
52.3
2219
Male, age 76, both hemispheres
51.5
Dorsal raphe nucleus nTPM: 80.5
2047
Male, age 72, unknown
98.4
2298
Female, age 72, unknown
97.7
1828
Male, age 53, unknown
74.2
2750
Male, age 76, both hemispheres
68.0
2016
Female, age 72, unknown
64.4
Inferior colliculus nTPM: 67.4
2097
Female, age 72, unknown
75.4
1890
Male, age 53, unknown
74.8
1848
Female, age 42, unknown
64.5
2849
Male, age 72, unknown
54.6
Median raphe nucleus nTPM: 77.3
2220
Male, age 76, midline
77.3
Periaquaductal grey, anterior nTPM: 62.2
1947
Male, age 18, unknown
72.4
1795
Male, age 51, unknown
59.1
2502
Female, age 75, unknown
55.3
Periaquaductal grey, dorsal nTPM: 56.5
1840
Male, age 53, unknown
63.5
2464
Female, age 72, unknown
57.4
2850
Male, age 76, both hemispheres
52.8
1831
Male, age 72, unknown
52.2
Periaquaductal grey, lateral nTPM: 54.7
2272
Male, age 74, both hemispheres
58.0
2053
Male, age 18, unknown
53.8
2140
Male, age 76, both hemispheres
52.4
Pretectal area nTPM: 59.7
1816
Male, age 51, unknown
67.1
2667
Female, age 75, unknown
67.0
2224
Female, age 72, unknown
66.2
2273
Male, age 74, both hemispheres
64.5
1944
Female, age 72, unknown
62.1
2007
Male, age 72, unknown
61.8
2825
Male, age 18, unknown
60.7
1817
Female, age 42, unknown
58.7
2316
Male, age 76, right hemisphere
51.2
1815
Male, age 53, unknown
49.5
2407
Male, age 75, both hemispheres
48.2
Red nucleus nTPM: 54.1
1821
Female, age 72, unknown
74.6
2725
Female, age 75, unknown
58.3
1954
Female, age 42, unknown
55.9
2227
Male, age 72, unknown
54.9
2769
Male, age 72, unknown
54.5
2584
Male, age 75, left hemisphere
53.8
2503
Female, age 72, unknown
52.9
2823
Male, age 76, right hemisphere
50.7
1865
Male, age 51, unknown
49.9
2785
Male, age 18, unknown
49.2
2588
Male, age 74, left hemisphere
47.9
1904
Male, age 53, unknown
46.2
Substantia nigra nTPM: 86.7
1941
Male, age 53, unknown
115.4
1916
Female, age 42, unknown
109.8
1851
Male, age 51, unknown
98.9
2241
Male, age 72, unknown
92.2
2409
Female, age 72, unknown
83.4
2699
Male, age 18, unknown
81.6
2665
Male, age 74, both hemispheres
77.8
1889
Female, age 72, unknown
75.7
2590
Female, age 75, unknown
71.5
2583
Male, age 75, right hemisphere
60.5
Superior colliculus nTPM: 54.4
2587
Male, age 74, left hemisphere
63.8
1839
Male, age 51, unknown
59.0
1895
Male, age 76, right hemisphere
58.8
2668
Female, age 75, unknown
58.7
1796
Male, age 53, unknown
56.6
2087
Female, age 72, unknown
56.6
2261
Male, age 18, unknown
54.6
2664
Male, age 75, both hemispheres
48.2
1913
Female, age 42, unknown
44.1
1995
Male, age 72, unknown
43.4
Ventral tegmental area nTPM: 74.5
1915
Female, age 42, unknown
93.1
2410
Female, age 72, unknown
89.4
2218
Male, age 76, both hemispheres
76.0
1942
Male, age 51, unknown
63.8
2021
Male, age 53, unknown
63.2
2223
Female, age 72, unknown
61.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 87.9
Samples: 139
Max nTPM: 272.3
Min nTPM: 49.1
Std nTPM: 27.1
Median nTPM: 83.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
272.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
197.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
170.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
143.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
136.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
131.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
130.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
127.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
124.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
120.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
119.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
118.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
117.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
116.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
115.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
114.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
113.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
113.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
112.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
109.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
108.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
108.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
108.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
104.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
104.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
103.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
103.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
103.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
102.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
102.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
100.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
100.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
98.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
96.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
95.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
94.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
94.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
93.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
93.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
93.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
92.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
91.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
90.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
90.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
90.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
90.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
90.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
89.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
89.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
89.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
88.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
88.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
88.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
88.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
87.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
87.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
87.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
87.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
86.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
86.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
85.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
85.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
85.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
85.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
84.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
84.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
84.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
84.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
83.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
83.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
82.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
81.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
81.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
81.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
81.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
80.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
80.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
80.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
79.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
79.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
79.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
78.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
78.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
78.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
77.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
77.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
77.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
77.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
76.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
76.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
75.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
75.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
75.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
75.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
75.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
74.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
74.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
74.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
74.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
74.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
73.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
73.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
73.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
73.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
72.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
72.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
72.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
72.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
71.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
71.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
71.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
70.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
70.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
69.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
69.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
69.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
68.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
68.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
68.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
67.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
67.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
66.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
64.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
64.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
63.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
63.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
62.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
61.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
60.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
60.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
60.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
59.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
58.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
54.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
54.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
53.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
52.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
51.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
49.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
68.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 68.8
Samples: 4
Max nTPM: 72.1
Min nTPM: 64.8
Sample A
Male
71.3
Sample B
Male
67.1
Sample C
Female
64.8
Sample D
Female
72.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.