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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
66.8
nTPM
HPA Brain:
57.3
nTPM
GTEx:
66.8
nTPM
FANTOM5:
39.9
Scaled Tags Per Million
Pig:
49.7
nTPM
Mouse:
79.6
nTPM
Allen mouse:
4.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA026425
Antibody HPA052751
Antibody CAB027391
Antibody CAB047353
Glial cells
Not detected
Not detected
Not detected
Not detected
Neuronal cells
Not detected
Not detected
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
57.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 50.4
1898
Male, age 80, left hemisphere
69.8
1855
Male, age 76, left hemisphere
54.0
2148
Female, age 91, left hemisphere
48.0
2621
Female, age 67, right hemisphere
48.0
1911
Female, age 85, right hemisphere
43.9
2529
Female, age 94, left hemisphere
38.6
Dentate gyrus nTPM: 50.3
1927
Female, age 91, both hemispheres
60.2
2530
Female, age 94, left hemisphere
57.1
2010
Male, age 76, both hemispheres
56.4
2528
Male, age 74, both hemispheres
48.6
2246
Female, age 85, both hemispheres
40.7
2531
Female, age 67, both hemispheres
39.0
Entorhinal gyrus nTPM: 48.2
2117
Female, age 91, right hemisphere
55.0
1938
Female, age 85, left hemisphere
53.0
1787
Male, age 76, left hemisphere
50.9
2764
Male, age 80, right hemisphere
50.4
2613
Female, age 94, left hemisphere
49.1
2686
Male, age 75, right hemisphere
31.2
Hippocampus, CA1 nTPM: 57.3
2749
Male, age 80, left hemisphere
76.7
2045
Male, age 76, both hemispheres
58.4
1873
Female, age 85, both hemispheres
54.5
2082
Female, age 91, right hemisphere
49.4
2527
Male, age 74, both hemispheres
47.5
Hippocampus, CA2 nTPM: 54.0
1892
Male, age 76, both hemispheres
65.9
1963
Male, age 80, left hemisphere
62.4
2249
Male, age 74, both hemispheres
54.7
1940
Female, age 85, left hemisphere
51.2
2113
Female, age 91, right hemisphere
45.3
2437
Female, age 94, left hemisphere
44.5
Hippocampus, CA3 nTPM: 51.0
1867
Male, age 76, both hemispheres
61.7
2137
Male, age 80, left hemisphere
54.7
2620
Female, age 94, left hemisphere
49.9
1891
Female, age 85, both hemispheres
49.4
2436
Male, age 74, both hemispheres
48.9
2861
Female, age 67, both hemispheres
41.7
Parahippocampal cortex nTPM: 44.4
1850
Male, age 80, both hemispheres
54.7
1990
Female, age 91, right hemisphere
48.9
1933
Female, age 85, both hemispheres
48.1
2250
Female, age 67, right hemisphere
48.1
2018
Male, age 76, both hemispheres
47.8
2245
Female, age 91, both hemispheres
43.1
2693
Female, age 94, both hemispheres
42.4
2692
Male, age 74, both hemispheres
41.6
2532
Female, age 72, left hemisphere
36.3
2622
Female, age 67, right hemisphere
32.7
Perirhinal gyrus nTPM: 52.8
1847
Female, age 91, left hemisphere
70.2
1794
Male, age 80, right hemisphere
56.4
1841
Female, age 85, right hemisphere
50.5
2521
Female, age 94, right hemisphere
48.4
2848
Male, age 76, right hemisphere
38.3
Subiculum nTPM: 50.6
1901
Male, age 80, both hemispheres
55.3
1977
Female, age 85, both hemispheres
53.6
2042
Male, age 76, both hemispheres
52.6
2729
Female, age 91, right hemisphere
49.4
2438
Female, age 94, left hemisphere
48.1
2619
Male, age 74, both hemispheres
44.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 66.8
Samples: 197
Max nTPM: 110.0
Min nTPM: 36.5
Std nTPM: 11.5
Median nTPM: 66.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
110.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
103.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
95.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
93.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
91.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
91.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
89.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
88.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
88.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
88.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
88.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
86.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
86.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
85.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
85.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
84.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
83.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
83.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
82.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
82.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
81.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
80.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
80.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
80.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
80.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
79.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
79.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
79.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
79.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
78.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
78.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
78.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
78.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
77.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
77.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
77.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
76.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
76.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
76.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
76.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
76.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
76.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
76.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
75.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
75.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
75.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
75.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
75.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
73.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
73.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
73.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
72.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
72.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
72.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
72.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
71.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
71.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
71.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
71.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
71.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
71.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
71.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
70.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
70.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
70.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
70.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
70.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
70.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
70.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
70.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
70.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
70.2
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
69.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
69.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
69.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
68.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
68.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
68.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
68.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
68.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
68.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
68.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
68.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
68.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
67.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
67.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
67.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
67.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
67.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
66.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
66.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
66.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
66.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
66.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
66.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
66.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
66.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
66.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
66.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
66.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
66.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
66.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
65.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
65.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
65.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
64.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
64.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
64.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
64.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
63.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
63.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
63.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
63.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
63.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
62.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
62.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
62.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
62.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
62.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
61.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
61.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
61.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
61.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
61.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
60.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
60.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
60.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
60.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
60.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
60.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
60.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
60.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
59.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
59.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
59.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
59.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
59.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
59.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
59.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
59.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
59.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
59.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
59.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
59.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
58.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
58.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
58.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
58.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
58.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
58.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
58.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
57.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
57.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
57.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
57.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
57.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
57.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
57.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
57.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
57.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
57.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
57.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
56.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
56.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
56.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
56.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
56.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
56.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
55.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
55.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
55.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
55.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
55.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
55.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
54.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
54.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
54.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
54.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
53.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
53.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
53.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
52.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
52.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
52.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
52.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
51.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
50.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
49.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
49.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
48.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
47.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
47.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
47.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
45.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
44.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
43.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
36.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 79.6
Samples: 4
Max nTPM: 82.7
Min nTPM: 73.0
Sample A
Male
73.0
Sample B
Male
82.7
Sample C
Female
80.3
Sample D
Female
82.3
Hippocampal formation nTPM: 68.3
Samples: 4
Max nTPM: 83.0
Min nTPM: 57.8
Sample A
Male
83.0
Sample B
Male
57.8
Sample C
Female
62.8
Sample D
Female
69.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.