MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:55.2 nTPM
GTEx:16.1 nTPM
FANTOM5:81.4 Scaled Tags Per Million
Pig:60.7 nTPM
Mouse:134.2 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.4
2019 Male, age 18, unknown 54.5
1827 Male, age 72, unknown 49.2
2411 Female, age 72, unknown 48.5
1870 Female, age 42, unknown 45.0
1833 Male, age 53, unknown 43.2
2666 Male, age 74, left hemisphere 42.9
1830 Male, age 51, unknown 39.4
2828 Female, age 72, unknown 37.7
2586 Male, age 75, left hemisphere 37.3
2219 Male, age 76, both hemispheres 36.0
Dorsal raphe nucleus
nTPM: 46.8
2298 Female, age 72, unknown 55.8
2047 Male, age 72, unknown 49.1
2750 Male, age 76, both hemispheres 43.8
1828 Male, age 53, unknown 43.5
2016 Female, age 72, unknown 41.9
Inferior colliculus
nTPM: 50.6
2097 Female, age 72, unknown 69.7
1848 Female, age 42, unknown 48.0
1890 Male, age 53, unknown 42.8
2849 Male, age 72, unknown 41.8
Median raphe nucleus
nTPM: 48.0
2220 Male, age 76, midline 48.0
Periaquaductal grey, anterior
nTPM: 53.4
1947 Male, age 18, unknown 58.9
2502 Female, age 75, unknown 56.1
1795 Male, age 51, unknown 45.2
Periaquaductal grey, dorsal
nTPM: 43.8
1840 Male, age 53, unknown 50.7
2464 Female, age 72, unknown 42.1
2850 Male, age 76, both hemispheres 42.1
1831 Male, age 72, unknown 40.5
Periaquaductal grey, lateral
nTPM: 40.4
2272 Male, age 74, both hemispheres 43.4
2053 Male, age 18, unknown 40.1
2140 Male, age 76, both hemispheres 37.6
Pretectal area
nTPM: 55.2
2007 Male, age 72, unknown 72.9
1817 Female, age 42, unknown 72.3
1816 Male, age 51, unknown 67.2
1944 Female, age 72, unknown 66.5
1815 Male, age 53, unknown 62.1
2224 Female, age 72, unknown 52.5
2273 Male, age 74, both hemispheres 50.1
2667 Female, age 75, unknown 45.9
2825 Male, age 18, unknown 41.2
2316 Male, age 76, right hemisphere 39.0
2407 Male, age 75, both hemispheres 37.9
Red nucleus
nTPM: 39.9
1821 Female, age 72, unknown 52.6
2785 Male, age 18, unknown 49.2
1954 Female, age 42, unknown 43.2
2503 Female, age 72, unknown 41.6
1865 Male, age 51, unknown 39.4
1904 Male, age 53, unknown 38.7
2725 Female, age 75, unknown 37.9
2769 Male, age 72, unknown 36.7
2588 Male, age 74, left hemisphere 36.5
2823 Male, age 76, right hemisphere 35.7
2227 Male, age 72, unknown 34.1
2584 Male, age 75, left hemisphere 33.5
Substantia nigra
nTPM: 45.9
1889 Female, age 72, unknown 60.6
2241 Male, age 72, unknown 51.0
2409 Female, age 72, unknown 48.0
1941 Male, age 53, unknown 47.2
2583 Male, age 75, right hemisphere 46.1
1851 Male, age 51, unknown 44.6
2590 Female, age 75, unknown 44.0
1916 Female, age 42, unknown 43.3
2665 Male, age 74, both hemispheres 42.7
2699 Male, age 18, unknown 31.2
Superior colliculus
nTPM: 46.0
2087 Female, age 72, unknown 57.7
2668 Female, age 75, unknown 54.4
2261 Male, age 18, unknown 49.6
1895 Male, age 76, right hemisphere 46.6
1839 Male, age 51, unknown 45.5
1796 Male, age 53, unknown 44.4
2587 Male, age 74, left hemisphere 41.7
1913 Female, age 42, unknown 41.3
2664 Male, age 75, both hemispheres 39.8
1995 Male, age 72, unknown 39.5
Ventral tegmental area
nTPM: 43.0
2410 Female, age 72, unknown 49.1
1942 Male, age 51, unknown 44.8
2218 Male, age 76, both hemispheres 44.7
2223 Female, age 72, unknown 39.9
2021 Male, age 53, unknown 39.8
1915 Female, age 42, unknown 39.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 139

Max nTPM: 40.4
Min nTPM: 7.8
Std nTPM: 5.5
Median nTPM: 15.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 40.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 36.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 34.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 33.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 28.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 27.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 26.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 25.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 25.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 24.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 24.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 81.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 81.4
FF:10158-103A5 76 years, female 81.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.2
Samples: 4

Max nTPM: 61.4
Min nTPM: 28.4
Sample A Female 61.4
Sample B Female 38.9
Sample C Male 52.1
Sample D Male 28.4
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 78.0
Min nTPM: 41.5
Sample A Female 41.5
Sample B Female 44.4
Sample C Male 78.0
Sample D Male 65.1
Periaqueductal gray
nTPM: 42.6
Samples: 3

Max nTPM: 48.9
Min nTPM: 38.4
Sample B Female 38.4
Sample C Male 48.9
Sample D Male 40.5
Superior colliculi
nTPM: 60.7
Samples: 4

Max nTPM: 72.6
Min nTPM: 47.2
Sample A Female 63.8
Sample B Female 47.2
Sample C Male 72.6
Sample D Male 59.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 134.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.2
Samples: 4

Max nTPM: 142.8
Min nTPM: 119.4
Sample A Male 119.4
Sample B Male 136.7
Sample C Female 142.8
Sample D Female 138.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
69169714 Antisense, RP_050321_04_B01, Mouse strain C57BL/6J (56 days, male) 1.2

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