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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
815.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4308.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3059.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3057.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2736.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2726.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2674.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2425.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2389.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2387.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2306.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2297.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2241.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2145.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2028.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1925.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1890.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1881.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1869.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1824.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1805.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1749.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1746.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1732.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1678.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1670.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1669.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1646.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1644.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1623.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1596.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1579.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1506.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1481.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1453.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1443.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1434.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1414.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1385.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1373.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1365.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1357.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1345.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1316.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1314.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1313.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1306.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1277.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1277.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1274.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1272.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1272.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1264.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1248.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1230.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1229.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1225.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1211.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1210.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1206.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1205.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1203.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1142.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1141.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1140.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1136.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1123.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1123.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1114.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1104.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1102.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1096.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1090.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1087.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1080.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1079.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1062.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1052.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1050.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1050.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1047.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1042.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
995.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
982.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
981.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
978.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
967.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
966.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
964.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
963.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
961.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
960.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
958.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
936.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
934.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
928.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
928.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
926.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
924.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
921.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
905.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
901.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
893.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
892.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
891.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
889.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
888.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
888.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
879.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
876.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
876.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
868.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
850.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
848.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
847.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
844.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
842.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
839.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
839.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
837.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
834.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
832.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
823.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
814.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
814.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
812.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
810.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
805.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
802.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
802.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
802.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
800.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
799.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
796.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
791.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
790.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
788.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
781.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
777.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
770.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
766.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
759.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
759.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
757.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
751.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
750.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
749.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
748.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
743.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
743.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
741.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
740.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
734.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
732.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
728.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
726.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
722.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
721.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
719.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
718.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
717.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
716.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
709.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
704.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
703.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
699.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
697.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
695.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
689.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
688.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
687.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
686.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
686.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
684.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
683.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
682.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
680.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
680.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
678.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
678.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
676.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
673.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
672.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
662.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
662.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
651.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
645.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
645.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
645.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
640.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
637.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
637.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
637.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
633.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
632.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
626.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
622.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
622.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
622.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
621.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
620.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
617.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
616.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
614.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
613.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
612.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
612.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
611.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
610.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
606.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
606.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
605.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
603.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
602.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
601.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
600.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
599.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
597.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
593.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
592.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
591.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
588.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
586.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
586.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
582.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
582.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
580.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
577.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
574.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
574.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
570.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
567.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
565.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
565.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
561.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
554.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
552.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
549.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
545.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
543.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
540.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
538.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
538.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
537.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
531.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
530.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
524.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
519.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
519.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
518.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
515.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
513.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
513.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
512.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
512.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
510.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
510.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
510.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
509.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
508.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
508.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
507.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
506.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
506.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
506.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
505.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
496.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
496.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
496.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
495.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
495.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
493.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
492.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
491.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
491.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
489.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
485.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
481.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
479.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
475.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
475.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
474.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
474.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
474.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
472.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
470.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
468.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
467.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
465.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
464.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
462.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
455.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
453.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
449.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
447.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
445.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
444.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
443.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
442.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
441.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
439.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
438.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
438.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
437.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
428.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
425.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
425.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
424.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
423.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
422.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
419.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
418.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
418.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
417.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
416.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
416.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
415.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
407.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
402.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
401.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
398.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
391.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
387.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
386.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
379.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
378.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
377.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
376.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
374.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
371.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
368.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
368.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
364.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
361.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
355.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
354.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
353.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
347.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
340.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
339.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
337.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
332.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
322.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
322.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
318.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
317.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
314.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
314.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
314.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
307.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
307.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
301.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
295.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
291.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
285.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
282.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
267.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
266.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
255.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
254.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
233.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
229.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
632.0
Number of samples
231
Samples
Sample
Description
TPM
DO45285
0 years, male, NA, stage:3, alive, 480 days
2302.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
1997.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
1930.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1926.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
1794.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
1750.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1651.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
1635.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1568.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
1567.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
1500.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1475.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
1442.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
1417.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
1385.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
1379.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
1365.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
1342.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
1337.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
1324.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
1290.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
1285.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1273.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1221.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
1210.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
1205.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1192.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1181.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
1142.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
1068.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
1068.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1058.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
1020.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
1001.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
980.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
968.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
945.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
945.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
936.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
927.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
916.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
916.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
901.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
894.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
886.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
865.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
865.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
864.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
849.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
839.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
835.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
827.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
822.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
812.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
800.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
799.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
786.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
781.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
772.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
755.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
752.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
746.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
737.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
733.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
724.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
717.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
716.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
715.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
712.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
711.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
709.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
702.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
692.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
689.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
686.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
683.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
679.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
678.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
676.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
670.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
670.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
666.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
660.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
653.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
651.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
645.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
645.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
644.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
643.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
638.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
637.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
633.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
625.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
611.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
609.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
609.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
600.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
596.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
594.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
589.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
575.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
556.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
543.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
542.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
535.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
533.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
526.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
522.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
519.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
516.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
508.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
504.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
503.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
501.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
501.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
496.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
496.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
491.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
488.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
486.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
476.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
476.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
475.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
474.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
473.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
470.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
469.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
466.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
465.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
465.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
462.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
461.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
460.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
459.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
457.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
455.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
454.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
451.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
447.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
446.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
438.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
432.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
429.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
426.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
425.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
414.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
413.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
411.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
410.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
408.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
402.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
399.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
389.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
388.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
386.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
386.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
377.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
376.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
375.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
375.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
375.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
374.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
374.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
373.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
369.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
369.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
362.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
361.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
354.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
353.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
353.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
346.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
345.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
343.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
341.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
339.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
339.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
335.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
332.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
330.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
326.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
325.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
325.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
324.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
324.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
324.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
322.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
322.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
318.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
316.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
313.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
312.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
310.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
300.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
298.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
296.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
295.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
294.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
293.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
289.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
289.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
287.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
285.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
281.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
281.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
279.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
278.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
274.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
271.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
266.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
262.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
262.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
261.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
258.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
254.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
251.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
245.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
233.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
232.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
227.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
222.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
221.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
214.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
208.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
201.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
200.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
196.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
178.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
178.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
178.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
150.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
0.5
327
Tumor
0.5
537
Tumor
0.4
1021
Tumor
0.4
473
Tumor
0.4
661
Tumor
0.4
367
Tumor
0.4
567
Tumor
0.3
743
Tumor
0.3
955
Tumor
0.3
965
Tumor
0.3
937
Tumor
0.3
983
Tumor
0.3
745
Tumor
0.3
951
Tumor
0.3
944
Normal
0.3
1025
Tumor
0.3
1027
Tumor
0.3
981
Tumor
0.3
697
Tumor
0.3
523
Tumor
0.3
815
Tumor
0.3
393
Tumor
0.3
957
Tumor
0.2
135
Tumor
0.2
1031
Tumor
0.2
285
Tumor
0.2
395
Tumor
0.2
471
Tumor
0.2
342
Normal
0.2
727
Tumor
0.2
546
Normal
0.2
387
Tumor
0.2
517
Tumor
0.2
113
Tumor
0.2
131
Tumor
0.2
554
Normal
0.2
938
Normal
0.2
385
Tumor
0.2
918
Normal
0.2
851
Tumor
0.2
545
Tumor
0.2
267
Tumor
0.2
922
Normal
0.2
685
Tumor
0.2
412
Normal
0.2
1032
Normal
0.2
448
Normal
0.2
952
Normal
0.2
355
Tumor
0.2
411
Tumor
0.2
967
Tumor
0.2
484
Normal
0.2
351
Tumor
0.2
356
Normal
0.2
353
Tumor
0.1
494
Normal
0.1
923
Tumor
0.1
862
Normal
0.1
212
Normal
0.1
1043
Tumor
0.1
916
Normal
0.1
124
Normal
0.1
525
Tumor
0.1
953
Tumor
0.1
1022
Normal
0.1
777
Tumor
0.1
744
Normal
0.1
171
Tumor
0.1
257
Tumor
0.1
357
Tumor
0.1
223
Tumor
0.1
1026
Normal
0.1
467
Tumor
0.1
864
Normal
0.1
738
Normal
0.1
755
Tumor
0.1
1014
Normal
0.1
1015
Tumor
0.1
728
Normal
0.1
865
Tumor
0.1
746
Normal
0.1
924
Normal
0.1
331
Tumor
0.1
497
Tumor
0.1
956
Normal
0.1
573
Tumor
0.1
785
Tumor
0.1
926
Normal
0.1
112
Tumor
0.1
524
Normal
0.1
778
Normal
0.1
128
Normal
0.1
817
Tumor
0.1
111
Normal
0.1
363
Tumor
0.1
114
Normal
0.1
488
Normal
0.1
142
Normal
0.1
518
Normal
0.1
481
Tumor
0.1
535
Tumor
0.1
533
Tumor
0.1
873
Tumor
0.1
228
Normal
0.1
227
Tumor
0.1
1028
Normal
0.1
861
Tumor
0.1
966
Normal
0.1
526
Normal
0.1
698
Normal
0.1
534
Normal
0.1
984
Normal
0.1
286
Normal
0.1
272
Normal
0.1
715
Tumor
0.1
756
Normal
0.1
878
Normal
0.1
474
Normal
0.1
515
Tumor
0.1
536
Normal
0.1
1044
Normal
0.1
724
Normal
0.1
742
Normal
0.1
147
Tumor
0.1
344
Normal
0.1
358
Normal
0.1
982
Normal
0.1
968
Normal
0.1
1041
Tumor
0.1
447
Tumor
0.1
866
Normal
0.1
1016
Normal
0.1
852
Normal
0.1
214
Normal
0.1
492
Normal
0.1
696
Normal
0.1
415
Tumor
0.1
141
Tumor
0.0
427
Tumor
0.0
636
Normal
0.0
528
Normal
0.0
136
Normal
0.0
483
Tumor
0.0
737
Tumor
0.0
1013
Tumor
0.0
465
Tumor
0.0
723
Tumor
0.0
364
Normal
0.0
493
Tumor
0.0
137
Tumor
0.0
964
Normal
0.0
647
Tumor
0.0
913
Tumor
0.0
915
Tumor
0.0
413
Tumor
0.0
284
Normal
0.0
477
Tumor
0.0
867
Tumor
0.0
958
Normal
0.0
925
Tumor
0.0
443
Tumor
0.0
487
Tumor
0.0
1046
Normal
0.0
917
Tumor
0.0
963
Tumor
0.0
187
Tumor
0.0
213
Tumor
0.0
954
Normal
0.0
271
Tumor
0.0
451
Tumor
0.0
513
Tumor
0.0
538
Normal
0.0
686
Normal
0.0
261
Tumor
0.0
343
Tumor
0.0
218
Normal
0.0
421
Tumor
0.0
435
Tumor
0.0
416
Normal
0.0
882
Normal
0.0
516
Normal
0.0
786
Normal
0.0
571
Tumor
0.0
527
Tumor
0.0
452
Normal
0.0
352
Normal
0.0
132
Normal
0.0
172
Normal
0.0
145
Tumor
0.0
462
Normal
0.0
123
Tumor
0.0
185
Tumor
0.0
232
Normal
0.0
921
Tumor
0.0
617
Tumor
0.0
858
Normal
0.0
824
Normal
0.0
695
Tumor
0.0
914
Normal
0.0
1042
Normal
0.0
977
Tumor
0.0
375
Tumor
0.0
514
Normal
0.0
874
Normal
0.0
328
Normal
0.0
222
Normal
0.0
445
Tumor
0.0
146
Normal
0.0
943
Tumor
0.0
277
Tumor
-0.1
431
Tumor
-0.1
553
Tumor
-0.1
857
Tumor
-0.1
341
Tumor
-0.1
436
Normal
-0.1
466
Normal
-0.1
376
Normal
-0.1
816
Normal
-0.1
635
Tumor
-0.1
472
Normal
-0.1
354
Normal
-0.1
365
Tumor
-0.1
186
Normal
-0.1
463
Tumor
-0.1
976
Normal
-0.1
425
Tumor
-0.1
392
Normal
-0.1
196
Normal
-0.1
162
Normal
-0.1
362
Normal
-0.1
975
Tumor
-0.1
434
Normal
-0.1
823
Tumor
-0.1
721
Tumor
-0.1
433
Tumor
-0.1
713
Tumor
-0.1
455
Tumor
-0.1
978
Normal
-0.1
138
Normal
-0.1
224
Normal
-0.1
478
Normal
-0.1
1045
Tumor
-0.1
714
Normal
-0.1
868
Normal
-0.1
127
Tumor
-0.1
572
Normal
-0.1
461
Tumor
-0.1
881
Tumor
-0.1
298
Normal
-0.1
126
Normal
-0.1
211
Tumor
-0.1
313
Tumor
-0.1
877
Tumor
-0.1
161
Tumor
-0.1
258
Normal
-0.1
911
Tumor
-0.1
231
Tumor
-0.1
125
Tumor
-0.1
297
Tumor
-0.1
332
Normal
-0.1
884
Normal
-0.1
912
Normal
-0.1
818
Normal
-0.1
716
Normal
-0.1
564
Normal
-0.1
568
Normal
-0.1
414
Normal
-0.1
813
Tumor
-0.1
722
Normal
-0.1
498
Normal
-0.2
148
Normal
-0.2
283
Tumor
-0.2
883
Tumor
-0.2
262
Normal
-0.2
311
Tumor
-0.2
563
Tumor
-0.2
558
Normal
-0.2
195
Tumor
-0.2
386
Normal
-0.2
628
Normal
-0.2
422
Normal
-0.2
366
Normal
-0.2
662
Normal
-0.2
574
Normal
-0.2
426
Normal
-0.2
814
Normal
-0.2
314
Normal
-0.2
618
Normal
-0.2
394
Normal
-0.2
424
Normal
-0.2
482
Normal
-0.2
368
Normal
-0.2
663
Tumor
-0.2
396
Normal
-0.2
383
Tumor
-0.2
278
Normal
-0.2
388
Normal
-0.2
671
Tumor
-0.2
221
Tumor
-0.2
863
Tumor
-0.2
491
Tumor
-0.2
423
Tumor
-0.2
312
Normal
-0.3
741
Tumor
-0.3
428
Normal
-0.3
217
Tumor
-0.3
268
Normal
-0.3
664
Normal
-0.3
464
Normal
-0.3
188
Normal
-0.3
361
Tumor
-0.3
191
Tumor
-0.3
648
Normal
-0.3
468
Normal
-0.3
432
Normal
-0.3
615
Tumor
-0.3
192
Normal
-0.3
616
Normal
-0.3
446
Normal
-0.3
627
Tumor
-0.3
456
Normal
-0.3
391
Tumor
-0.4
642
Normal
-0.4
666
Normal
-0.4
384
Normal
-0.4
641
Tumor
-0.4
672
Normal
-0.4
665
Tumor
-0.5
444
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.