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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.2
Number of samples
231
Samples
Sample
Description
TPM
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
3.4
917
Tumor
2.6
537
Tumor
2.0
627
Tumor
1.7
361
Tumor
1.7
344
Normal
1.6
342
Normal
1.6
257
Tumor
1.6
665
Tumor
1.5
918
Normal
1.5
231
Tumor
1.4
672
Normal
1.4
365
Tumor
1.4
443
Tumor
1.3
445
Tumor
1.3
926
Normal
1.2
921
Tumor
1.2
666
Normal
1.2
368
Normal
1.2
916
Normal
1.2
662
Normal
1.2
664
Normal
1.1
663
Tumor
1.1
141
Tumor
1.1
393
Tumor
1.1
366
Normal
1.1
375
Tumor
1.1
124
Normal
1.0
648
Normal
1.0
123
Tumor
1.0
391
Tumor
1.0
383
Tumor
1.0
192
Normal
1.0
125
Tumor
1.0
387
Tumor
0.9
434
Normal
0.9
196
Normal
0.9
137
Tumor
0.9
636
Normal
0.9
341
Tumor
0.9
436
Normal
0.9
195
Tumor
0.9
661
Tumor
0.9
222
Normal
0.9
411
Tumor
0.9
191
Tumor
0.9
671
Tumor
0.9
355
Tumor
0.8
385
Tumor
0.8
217
Tumor
0.8
922
Normal
0.8
395
Tumor
0.8
967
Tumor
0.8
358
Normal
0.8
113
Tumor
0.8
112
Tumor
0.8
444
Normal
0.8
426
Normal
0.7
421
Tumor
0.7
214
Normal
0.7
433
Tumor
0.7
384
Normal
0.7
357
Tumor
0.7
616
Normal
0.7
423
Tumor
0.7
618
Normal
0.7
413
Tumor
0.7
376
Normal
0.7
953
Tumor
0.6
114
Normal
0.6
362
Normal
0.6
628
Normal
0.6
218
Normal
0.6
516
Normal
0.6
297
Tumor
0.6
367
Tumor
0.6
446
Normal
0.5
363
Tumor
0.5
146
Normal
0.5
452
Normal
0.5
484
Normal
0.5
386
Normal
0.5
388
Normal
0.5
465
Tumor
0.5
213
Tumor
0.5
135
Tumor
0.5
414
Normal
0.5
138
Normal
0.5
428
Normal
0.4
468
Normal
0.4
427
Tumor
0.4
451
Tumor
0.4
924
Normal
0.4
422
Normal
0.4
131
Tumor
0.4
464
Normal
0.4
396
Normal
0.4
494
Normal
0.4
392
Normal
0.4
956
Normal
0.4
615
Tumor
0.4
514
Normal
0.4
111
Normal
0.4
488
Normal
0.4
526
Normal
0.4
221
Tumor
0.4
467
Tumor
0.4
412
Normal
0.4
463
Tumor
0.3
132
Normal
0.3
498
Normal
0.3
145
Tumor
0.3
285
Tumor
0.3
312
Normal
0.3
331
Tumor
0.3
435
Tumor
0.3
136
Normal
0.3
415
Tumor
0.3
964
Normal
0.3
954
Normal
0.3
647
Tumor
0.3
518
Normal
0.2
128
Normal
0.2
938
Normal
0.2
278
Normal
0.2
258
Normal
0.2
534
Normal
0.2
394
Normal
0.2
456
Normal
0.2
267
Tumor
0.2
364
Normal
0.2
424
Normal
0.2
416
Normal
0.2
356
Normal
0.2
332
Normal
0.1
425
Tumor
0.1
524
Normal
0.1
283
Tumor
0.1
142
Normal
0.1
525
Tumor
0.1
528
Normal
0.1
126
Normal
0.1
455
Tumor
0.1
483
Tumor
0.1
493
Tumor
0.1
262
Normal
0.0
268
Normal
0.0
328
Normal
0.0
968
Normal
0.0
314
Normal
0.0
635
Tumor
0.0
492
Normal
0.0
785
Tumor
0.0
756
Normal
0.0
523
Tumor
0.0
432
Normal
0.0
965
Tumor
0.0
313
Tumor
0.0
272
Normal
0.0
517
Tumor
0.0
546
Normal
0.0
127
Tumor
0.0
487
Tumor
0.0
777
Tumor
-0.1
745
Tumor
-0.1
497
Tumor
-0.1
277
Tumor
-0.1
298
Normal
-0.1
513
Tumor
-0.1
944
Normal
-0.1
963
Tumor
-0.1
261
Tumor
-0.1
976
Normal
-0.1
955
Tumor
-0.1
966
Normal
-0.1
515
Tumor
-0.1
958
Normal
-0.1
814
Normal
-0.1
466
Normal
-0.1
327
Tumor
-0.1
352
Normal
-0.2
354
Normal
-0.2
923
Tumor
-0.2
778
Normal
-0.2
232
Normal
-0.2
554
Normal
-0.2
975
Tumor
-0.2
937
Tumor
-0.3
952
Normal
-0.3
943
Tumor
-0.3
431
Tumor
-0.3
642
Normal
-0.3
491
Tumor
-0.3
641
Tumor
-0.3
817
Tumor
-0.3
786
Normal
-0.3
271
Tumor
-0.3
353
Tumor
-0.4
813
Tumor
-0.4
746
Normal
-0.4
755
Tumor
-0.4
617
Tumor
-0.4
951
Tumor
-0.4
957
Tumor
-0.5
823
Tumor
-0.5
553
Tumor
-0.5
351
Tumor
-0.5
538
Normal
-0.6
527
Tumor
-0.7
311
Tumor
-0.7
223
Tumor
-0.7
915
Tumor
-0.8
211
Tumor
-0.8
224
Normal
-0.9
533
Tumor
-0.9
228
Normal
-0.9
545
Tumor
-1.0
857
Tumor
-1.0
286
Normal
-1.0
816
Normal
-1.0
284
Normal
-1.0
1028
Normal
-1.0
925
Tumor
-1.0
852
Normal
-1.1
227
Tumor
-1.1
818
Normal
-1.1
1026
Normal
-1.2
1032
Normal
-1.2
212
Normal
-1.2
1021
Tumor
-1.2
1041
Tumor
-1.2
824
Normal
-1.3
1042
Normal
-1.3
858
Normal
-1.3
815
Tumor
-1.4
851
Tumor
-1.7
1027
Tumor
-1.8
1025
Tumor
-1.8
1022
Normal
-1.9
1031
Tumor
-2.3
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
474
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
448
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
