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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCNP is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
56.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
53.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
51.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
50.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
49.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
43.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
43.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
41.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
36.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
34.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
33.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
27.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCNP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.1
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
92.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
89.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
88.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
84.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
80.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
77.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
63.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
59.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
59.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
59.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
58.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
57.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
57.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
56.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
56.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
55.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
55.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
55.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
55.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
54.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
53.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
53.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
53.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
53.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
52.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
51.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
51.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
51.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
50.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
50.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
50.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
49.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
49.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
49.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
49.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
49.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
49.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
49.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
48.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
47.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
47.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
47.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
47.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
47.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
46.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
46.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
46.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
46.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
46.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
46.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
45.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
45.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
44.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
44.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
44.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
44.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
43.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
43.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
42.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
42.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
42.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
41.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
40.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
39.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
38.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
38.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
38.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
38.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
38.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
38.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
37.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
37.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
36.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
36.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
36.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
35.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
35.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
35.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
35.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
34.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
34.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
33.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
33.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
32.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
32.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
30.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
28.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
27.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
27.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.8
965
Tumor
1.7
473
Tumor
1.5
743
Tumor
1.5
957
Tumor
1.4
497
Tumor
1.2
537
Tumor
1.2
883
Tumor
1.2
951
Tumor
1.1
545
Tumor
1.1
523
Tumor
1.1
983
Tumor
1.1
1041
Tumor
1.0
517
Tumor
1.0
1013
Tumor
1.0
923
Tumor
1.0
921
Tumor
1.0
285
Tumor
1.0
817
Tumor
0.9
533
Tumor
0.9
881
Tumor
0.9
963
Tumor
0.9
411
Tumor
0.9
1021
Tumor
0.9
967
Tumor
0.9
977
Tumor
0.8
777
Tumor
0.8
425
Tumor
0.8
131
Tumor
0.8
535
Tumor
0.8
741
Tumor
0.8
695
Tumor
0.8
487
Tumor
0.8
525
Tumor
0.8
1043
Tumor
0.7
471
Tumor
0.7
493
Tumor
0.7
911
Tumor
0.7
915
Tumor
0.7
647
Tumor
0.7
785
Tumor
0.7
211
Tumor
0.7
925
Tumor
0.7
975
Tumor
0.7
161
Tumor
0.7
685
Tumor
0.7
715
Tumor
0.7
737
Tumor
0.7
877
Tumor
0.6
1031
Tumor
0.6
483
Tumor
0.6
461
Tumor
0.6
823
Tumor
0.6
937
Tumor
0.6
813
Tumor
0.6
815
Tumor
0.6
814
Normal
0.6
477
Tumor
0.6
283
Tumor
0.6
861
Tumor
0.6
943
Tumor
0.6
553
Tumor
0.6
863
Tumor
0.6
1025
Tumor
0.6
498
Normal
0.6
415
Tumor
0.6
413
Tumor
0.5
1045
Tumor
0.5
484
Normal
0.5
913
Tumor
0.5
536
Normal
0.5
727
Tumor
0.5
857
Tumor
0.5
567
Tumor
0.5
355
Tumor
0.5
447
Tumor
0.5
663
Tumor
0.5
563
Tumor
0.5
385
Tumor
0.5
431
Tumor
0.5
351
Tumor
0.5
227
Tumor
0.4
524
Normal
0.4
966
Normal
0.4
554
Normal
0.4
513
Tumor
0.4
1015
Tumor
0.4
958
Normal
0.4
968
Normal
0.4
481
Tumor
0.4
924
Normal
0.4
1028
Normal
0.4
494
Normal
0.4
864
Normal
0.3
867
Tumor
0.3
714
Normal
0.3
912
Normal
0.3
327
Tumor
0.3
824
Normal
0.3
981
Tumor
0.3
953
Tumor
0.3
816
Normal
0.3
617
Tumor
0.3
984
Normal
0.3
884
Normal
0.3
515
Tumor
0.3
387
Tumor
0.3
478
Normal
0.3
746
Normal
0.3
697
Tumor
0.3
488
Normal
0.3
492
Normal
0.3
455
Tumor
0.3
641
Tumor
0.3
516
Normal
0.3
538
Normal
0.2
851
Tumor
0.2
918
Normal
0.2
878
Normal
0.2
527
Tumor
0.2
557
Tumor
0.2
1022
Normal
0.2
1044
Normal
0.2
391
Tumor
0.2
518
Normal
0.2
696
Normal
0.2
882
Normal
0.2
862
Normal
0.2
665
Tumor
0.2
671
Tumor
0.2
852
Normal
0.2
778
Normal
0.2
375
Tumor
0.2
615
Tumor
0.2
467
Tumor
0.2
1014
Normal
0.2
474
Normal
0.2
786
Normal
0.2
297
Tumor
0.2
868
Normal
0.2
491
Tumor
0.2
858
Normal
0.2
866
Normal
0.2
873
Tumor
0.2
964
Normal
0.2
546
Normal
0.2
976
Normal
0.2
135
Tumor
0.2
698
Normal
0.2
1016
Normal
0.2
311
Tumor
0.2
978
Normal
0.2
284
Normal
0.2
465
Tumor
0.2
472
Normal
0.2
224
Normal
0.2
661
Tumor
0.1
534
Normal
0.1
395
Tumor
0.1
558
Normal
0.1
955
Tumor
0.1
635
Tumor
0.1
448
Normal
0.1
572
Normal
0.1
952
Normal
0.1
1026
Normal
0.1
1042
Normal
0.1
982
Normal
0.1
922
Normal
0.1
954
Normal
0.1
744
Normal
0.1
944
Normal
0.1
1046
Normal
0.1
412
Normal
0.1
914
Normal
0.1
916
Normal
0.1
528
Normal
0.1
917
Tumor
0.1
313
Tumor
0.1
514
Normal
0.1
818
Normal
0.1
573
Tumor
0.1
141
Tumor
0.1
745
Tumor
0.1
742
Normal
0.1
112
Tumor
0.1
463
Tumor
0.1
716
Normal
0.1
228
Normal
0.1
571
Tumor
0.0
756
Normal
0.0
874
Normal
0.0
526
Normal
0.0
364
Normal
0.0
755
Tumor
0.0
728
Normal
0.0
938
Normal
0.0
261
Tumor
0.0
482
Normal
0.0
137
Tumor
0.0
331
Tumor
0.0
724
Normal
0.0
1032
Normal
0.0
383
Tumor
0.0
427
Tumor
0.0
171
Tumor
0.0
416
Normal
0.0
686
Normal
0.0
328
Normal
0.0
341
Tumor
0.0
123
Tumor
0.0
361
Tumor
0.0
125
Tumor
0.0
223
Tumor
0.0
363
Tumor
0.0
212
Normal
0.0
721
Tumor
0.0
926
Normal
0.0
723
Tumor
0.0
267
Tumor
-0.1
367
Tumor
-0.1
443
Tumor
-0.1
627
Tumor
-0.1
628
Normal
-0.1
286
Normal
-0.1
231
Tumor
-0.1
393
Tumor
-0.1
445
Tumor
-0.1
462
Normal
-0.1
722
Normal
-0.1
217
Tumor
-0.1
738
Normal
-0.2
568
Normal
-0.2
451
Tumor
-0.2
662
Normal
-0.2
257
Tumor
-0.2
616
Normal
-0.2
232
Normal
-0.2
564
Normal
-0.2
1027
Tumor
-0.2
357
Tumor
-0.2
187
Tumor
-0.2
127
Tumor
-0.2
113
Tumor
-0.2
664
Normal
-0.2
444
Normal
-0.2
574
Normal
-0.2
396
Normal
-0.2
713
Tumor
-0.2
956
Normal
-0.3
221
Tumor
-0.3
642
Normal
-0.3
192
Normal
-0.3
195
Tumor
-0.3
384
Normal
-0.3
365
Tumor
-0.3
386
Normal
-0.3
277
Tumor
-0.3
636
Normal
-0.3
435
Tumor
-0.3
392
Normal
-0.3
271
Tumor
-0.3
191
Tumor
-0.3
362
Normal
-0.3
456
Normal
-0.3
433
Tumor
-0.3
648
Normal
-0.3
268
Normal
-0.4
213
Tumor
-0.4
218
Normal
-0.4
185
Tumor
-0.4
258
Normal
-0.4
468
Normal
-0.4
666
Normal
-0.4
298
Normal
-0.4
421
Tumor
-0.4
262
Normal
-0.5
111
Normal
-0.5
618
Normal
-0.5
145
Tumor
-0.5
672
Normal
-0.5
446
Normal
-0.5
423
Tumor
-0.5
222
Normal
-0.5
452
Normal
-0.5
466
Normal
-0.5
366
Normal
-0.5
126
Normal
-0.5
436
Normal
-0.5
368
Normal
-0.5
388
Normal
-0.5
464
Normal
-0.5
142
Normal
-0.5
312
Normal
-0.5
148
Normal
-0.5
434
Normal
-0.5
114
Normal
-0.6
214
Normal
-0.6
146
Normal
-0.6
343
Tumor
-0.6
278
Normal
-0.6
426
Normal
-0.6
376
Normal
-0.6
424
Normal
-0.6
272
Normal
-0.6
196
Normal
-0.7
428
Normal
-0.7
172
Normal
-0.7
138
Normal
-0.7
394
Normal
-0.7
136
Normal
-0.7
422
Normal
-0.7
162
Normal
-0.7
353
Tumor
-0.7
188
Normal
-0.7
356
Normal
-0.8
124
Normal
-0.8
132
Normal
-0.8
128
Normal
-0.8
352
Normal
-0.8
314
Normal
-0.9
432
Normal
-0.9
414
Normal
-0.9
186
Normal
-0.9
344
Normal
-1.0
332
Normal
-1.1
354
Normal
-1.2
147
Tumor
-1.2
342
Normal
-1.5
358
Normal
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
