MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.9 nTPM
HPA Brain:15.9 nTPM
GTEx:2.9 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:14.1 nTPM
Mouse:12.8 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.6
1827 Male, age 72, unknown 16.2
2219 Male, age 76, both hemispheres 15.8
2828 Female, age 72, unknown 14.5
2411 Female, age 72, unknown 14.3
1833 Male, age 53, unknown 13.2
1870 Female, age 42, unknown 13.2
1830 Male, age 51, unknown 12.8
2019 Male, age 18, unknown 12.7
2586 Male, age 75, left hemisphere 11.7
2666 Male, age 74, left hemisphere 11.1
Dorsal raphe nucleus
nTPM: 14.6
2298 Female, age 72, unknown 19.0
2016 Female, age 72, unknown 15.2
1828 Male, age 53, unknown 13.3
2047 Male, age 72, unknown 13.1
2750 Male, age 76, both hemispheres 12.3
Inferior colliculus
nTPM: 15.7
2097 Female, age 72, unknown 16.8
2849 Male, age 72, unknown 15.5
1890 Male, age 53, unknown 15.4
1848 Female, age 42, unknown 15.0
Median raphe nucleus
nTPM: 15.2
2220 Male, age 76, midline 15.2
Periaquaductal grey, anterior
nTPM: 14.5
1795 Male, age 51, unknown 14.8
2502 Female, age 75, unknown 14.6
1947 Male, age 18, unknown 14.2
Periaquaductal grey, dorsal
nTPM: 15.1
2850 Male, age 76, both hemispheres 16.0
1831 Male, age 72, unknown 15.2
1840 Male, age 53, unknown 15.1
2464 Female, age 72, unknown 14.0
Periaquaductal grey, lateral
nTPM: 15.9
2140 Male, age 76, both hemispheres 16.5
2272 Male, age 74, both hemispheres 16.3
2053 Male, age 18, unknown 15.0
Pretectal area
nTPM: 14.7
2273 Male, age 74, both hemispheres 16.3
1817 Female, age 42, unknown 16.2
1816 Male, age 51, unknown 15.6
2316 Male, age 76, right hemisphere 15.2
2825 Male, age 18, unknown 15.0
2224 Female, age 72, unknown 14.9
2007 Male, age 72, unknown 14.7
1944 Female, age 72, unknown 14.6
1815 Male, age 53, unknown 14.1
2667 Female, age 75, unknown 12.7
2407 Male, age 75, both hemispheres 12.6
Red nucleus
nTPM: 12.9
2503 Female, age 72, unknown 14.9
2725 Female, age 75, unknown 14.3
1954 Female, age 42, unknown 13.7
1904 Male, age 53, unknown 13.6
1821 Female, age 72, unknown 13.5
2785 Male, age 18, unknown 13.5
2227 Male, age 72, unknown 13.0
1865 Male, age 51, unknown 12.5
2769 Male, age 72, unknown 12.3
2823 Male, age 76, right hemisphere 12.0
2588 Male, age 74, left hemisphere 11.2
2584 Male, age 75, left hemisphere 10.2
Substantia nigra
nTPM: 12.6
1889 Female, age 72, unknown 14.5
2590 Female, age 75, unknown 14.2
1916 Female, age 42, unknown 13.6
2665 Male, age 74, both hemispheres 13.6
2583 Male, age 75, right hemisphere 13.2
1941 Male, age 53, unknown 12.7
1851 Male, age 51, unknown 12.1
2699 Male, age 18, unknown 11.4
2241 Male, age 72, unknown 11.2
2409 Female, age 72, unknown 10.0
Superior colliculus
nTPM: 13.9
2261 Male, age 18, unknown 16.4
1796 Male, age 53, unknown 15.4
1995 Male, age 72, unknown 14.7
1839 Male, age 51, unknown 14.4
2087 Female, age 72, unknown 13.9
2587 Male, age 74, left hemisphere 13.6
1913 Female, age 42, unknown 13.3
1895 Male, age 76, right hemisphere 13.1
2668 Female, age 75, unknown 12.6
2664 Male, age 75, both hemispheres 11.8
Ventral tegmental area
nTPM: 13.2
2410 Female, age 72, unknown 14.8
2218 Male, age 76, both hemispheres 14.0
1942 Male, age 51, unknown 13.1
2021 Male, age 53, unknown 12.9
1915 Female, age 42, unknown 12.3
2223 Female, age 72, unknown 11.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.9
Samples: 139

Max nTPM: 4.6
Min nTPM: 1.9
Std nTPM: 0.4
Median nTPM: 2.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 4.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 4.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 4.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 4.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 4.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 4.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 3.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 3.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 3.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 3.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.2
Samples: 4

Max nTPM: 13.1
Min nTPM: 11.3
Sample A Female 13.1
Sample B Female 12.4
Sample C Male 11.9
Sample D Male 11.3
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 14.5
Min nTPM: 13.6
Sample A Female 14.5
Sample B Female 13.6
Sample C Male 14.4
Sample D Male 14.1
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 14.2
Min nTPM: 12.6
Sample B Female 12.6
Sample C Male 14.2
Sample D Male 12.7
Superior colliculi
nTPM: 14.0
Samples: 4

Max nTPM: 15.8
Min nTPM: 12.8
Sample A Female 13.3
Sample B Female 15.8
Sample C Male 13.9
Sample D Male 12.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 14.1
Min nTPM: 11.7
Sample A Male 11.7
Sample B Male 13.9
Sample C Female 14.1
Sample D Female 11.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69873325 Antisense, RP_050512_01_A06, Mouse strain C57BL/6J (56 days, male) 1.1

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