MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.4 nTPM
HPA Brain:100.0 nTPM
GTEx:46.4 nTPM
FANTOM5:66.9 Scaled Tags Per Million
Pig:124.0 nTPM
Mouse:94.0 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 100.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.2
2586 Male, age 75, left hemisphere 145.6
2019 Male, age 18, unknown 96.2
2666 Male, age 74, left hemisphere 94.1
1827 Male, age 72, unknown 91.4
2828 Female, age 72, unknown 78.1
2219 Male, age 76, both hemispheres 76.6
2411 Female, age 72, unknown 75.5
1833 Male, age 53, unknown 66.7
1870 Female, age 42, unknown 66.0
1830 Male, age 51, unknown 62.0
Dorsal raphe nucleus
nTPM: 80.7
2047 Male, age 72, unknown 96.1
2298 Female, age 72, unknown 90.6
2750 Male, age 76, both hemispheres 77.6
1828 Male, age 53, unknown 76.6
2016 Female, age 72, unknown 62.5
Inferior colliculus
nTPM: 75.2
2097 Female, age 72, unknown 80.8
1890 Male, age 53, unknown 77.3
1848 Female, age 42, unknown 75.0
2849 Male, age 72, unknown 67.9
Median raphe nucleus
nTPM: 84.2
2220 Male, age 76, midline 84.2
Periaquaductal grey, anterior
nTPM: 100.0
2502 Female, age 75, unknown 106.7
1795 Male, age 51, unknown 103.5
1947 Male, age 18, unknown 89.7
Periaquaductal grey, dorsal
nTPM: 68.4
1840 Male, age 53, unknown 80.4
2464 Female, age 72, unknown 71.3
1831 Male, age 72, unknown 64.6
2850 Male, age 76, both hemispheres 57.4
Periaquaductal grey, lateral
nTPM: 65.3
2053 Male, age 18, unknown 69.2
2140 Male, age 76, both hemispheres 65.0
2272 Male, age 74, both hemispheres 61.6
Pretectal area
nTPM: 91.5
1816 Male, age 51, unknown 128.1
2007 Male, age 72, unknown 126.5
1817 Female, age 42, unknown 116.7
1944 Female, age 72, unknown 106.0
1815 Male, age 53, unknown 96.5
2407 Male, age 75, both hemispheres 84.3
2667 Female, age 75, unknown 81.5
2224 Female, age 72, unknown 79.0
2825 Male, age 18, unknown 71.1
2273 Male, age 74, both hemispheres 61.3
2316 Male, age 76, right hemisphere 55.9
Red nucleus
nTPM: 76.9
2584 Male, age 75, left hemisphere 107.2
2785 Male, age 18, unknown 96.0
2588 Male, age 74, left hemisphere 89.6
2725 Female, age 75, unknown 77.7
2503 Female, age 72, unknown 74.9
1821 Female, age 72, unknown 74.1
2227 Male, age 72, unknown 71.9
1954 Female, age 42, unknown 71.0
2769 Male, age 72, unknown 71.0
1904 Male, age 53, unknown 68.5
1865 Male, age 51, unknown 67.6
2823 Male, age 76, right hemisphere 53.4
Substantia nigra
nTPM: 91.2
1916 Female, age 42, unknown 113.1
2583 Male, age 75, right hemisphere 105.9
1851 Male, age 51, unknown 103.7
1889 Female, age 72, unknown 102.3
2665 Male, age 74, both hemispheres 100.2
1941 Male, age 53, unknown 94.3
2241 Male, age 72, unknown 75.6
2590 Female, age 75, unknown 75.1
2409 Female, age 72, unknown 72.3
2699 Male, age 18, unknown 69.8
Superior colliculus
nTPM: 85.9
2664 Male, age 75, both hemispheres 118.8
1796 Male, age 53, unknown 100.4
2087 Female, age 72, unknown 100.2
2668 Female, age 75, unknown 99.5
2261 Male, age 18, unknown 95.5
1839 Male, age 51, unknown 75.3
2587 Male, age 74, left hemisphere 69.6
1995 Male, age 72, unknown 68.5
1895 Male, age 76, right hemisphere 66.9
1913 Female, age 42, unknown 64.7
Ventral tegmental area
nTPM: 84.1
2410 Female, age 72, unknown 92.1
2223 Female, age 72, unknown 89.0
1915 Female, age 42, unknown 88.6
2218 Male, age 76, both hemispheres 83.0
1942 Male, age 51, unknown 80.3
2021 Male, age 53, unknown 71.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.4
Samples: 139

Max nTPM: 86.3
Min nTPM: 24.0
Std nTPM: 12.7
Median nTPM: 43.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 86.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 84.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 83.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 82.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 77.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 71.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 70.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 70.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 70.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 69.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 68.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.9
FF:10158-103A5 76 years, female 66.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 124.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 99.9
Samples: 4

Max nTPM: 145.8
Min nTPM: 72.9
Sample A Female 145.8
Sample B Female 90.7
Sample C Male 90.0
Sample D Male 72.9
Midbrain
nTPM: 118.4
Samples: 4

Max nTPM: 144.4
Min nTPM: 100.2
Sample A Female 122.0
Sample B Female 100.2
Sample C Male 144.4
Sample D Male 107.0
Periaqueductal gray
nTPM: 90.1
Samples: 3

Max nTPM: 98.9
Min nTPM: 82.4
Sample B Female 89.0
Sample C Male 98.9
Sample D Male 82.4
Superior colliculi
nTPM: 124.0
Samples: 4

Max nTPM: 152.3
Min nTPM: 110.8
Sample A Female 152.3
Sample B Female 110.8
Sample C Male 121.6
Sample D Male 111.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 94.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.0
Samples: 4

Max nTPM: 95.3
Min nTPM: 92.8
Sample A Male 93.0
Sample B Male 92.8
Sample C Female 94.7
Sample D Female 95.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
68798244 Antisense, RP_050215_02_A10, Mouse strain C57BL/6J (56 days, male) 3.1

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