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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
205.3
nTPM
HPA Brain:
493.1
nTPM
GTEx:
205.3
nTPM
FANTOM5:
283.6
Scaled Tags Per Million
Pig:
237.4
nTPM
Mouse:
435.8
nTPM
Allen mouse:
11.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA040736
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
493.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 379.5
2621
Female, age 67, right hemisphere
441.4
1898
Male, age 80, left hemisphere
429.3
2529
Female, age 94, left hemisphere
365.9
1855
Male, age 76, left hemisphere
359.8
1911
Female, age 85, right hemisphere
346.2
2148
Female, age 91, left hemisphere
334.3
Dentate gyrus nTPM: 350.6
1927
Female, age 91, both hemispheres
423.9
2530
Female, age 94, left hemisphere
382.4
2246
Female, age 85, both hemispheres
349.2
2010
Male, age 76, both hemispheres
344.1
2531
Female, age 67, both hemispheres
323.5
2528
Male, age 74, both hemispheres
280.4
Entorhinal gyrus nTPM: 388.9
2613
Female, age 94, left hemisphere
489.8
1938
Female, age 85, left hemisphere
424.0
1787
Male, age 76, left hemisphere
403.4
2764
Male, age 80, right hemisphere
371.3
2686
Male, age 75, right hemisphere
336.7
2117
Female, age 91, right hemisphere
308.5
Hippocampus, CA1 nTPM: 378.0
2749
Male, age 80, left hemisphere
518.7
1873
Female, age 85, both hemispheres
394.8
2045
Male, age 76, both hemispheres
345.3
2527
Male, age 74, both hemispheres
335.9
2082
Female, age 91, right hemisphere
295.4
Hippocampus, CA2 nTPM: 369.5
1963
Male, age 80, left hemisphere
484.5
1892
Male, age 76, both hemispheres
427.1
2437
Female, age 94, left hemisphere
383.1
1940
Female, age 85, left hemisphere
355.7
2113
Female, age 91, right hemisphere
311.0
2249
Male, age 74, both hemispheres
256.0
Hippocampus, CA3 nTPM: 375.3
2620
Female, age 94, left hemisphere
445.8
2137
Male, age 80, left hemisphere
437.2
2861
Female, age 67, both hemispheres
394.9
1867
Male, age 76, both hemispheres
347.1
1891
Female, age 85, both hemispheres
337.3
2436
Male, age 74, both hemispheres
289.2
Parahippocampal cortex nTPM: 388.9
1850
Male, age 80, both hemispheres
467.9
2245
Female, age 91, both hemispheres
429.7
2622
Female, age 67, right hemisphere
412.8
1933
Female, age 85, both hemispheres
410.9
2532
Female, age 72, left hemisphere
401.3
2693
Female, age 94, both hemispheres
373.6
1990
Female, age 91, right hemisphere
370.5
2250
Female, age 67, right hemisphere
348.2
2018
Male, age 76, both hemispheres
344.1
2692
Male, age 74, both hemispheres
330.1
Perirhinal gyrus nTPM: 493.1
1847
Female, age 91, left hemisphere
573.7
1794
Male, age 80, right hemisphere
541.7
1841
Female, age 85, right hemisphere
504.8
2521
Female, age 94, right hemisphere
433.8
2848
Male, age 76, right hemisphere
411.4
Subiculum nTPM: 356.5
2438
Female, age 94, left hemisphere
397.4
1977
Female, age 85, both hemispheres
395.1
2619
Male, age 74, both hemispheres
385.3
1901
Male, age 80, both hemispheres
367.5
2042
Male, age 76, both hemispheres
305.6
2729
Female, age 91, right hemisphere
288.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
205.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 205.3
Samples: 197
Max nTPM: 435.4
Min nTPM: 110.3
Std nTPM: 58.6
Median nTPM: 195.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
435.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
428.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
425.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
414.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
379.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
372.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
349.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
333.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
319.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
307.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
307.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
302.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
298.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
296.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
286.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
278.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
278.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
277.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
273.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
272.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
270.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
269.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
267.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
266.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
265.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
263.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
263.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
263.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
258.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
257.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
254.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
253.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
253.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
253.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
251.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
249.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
248.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
248.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
245.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
244.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
244.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
242.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
240.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
239.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
239.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
237.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
236.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
236.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
235.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
234.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
232.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
230.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
230.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
228.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
226.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
226.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
225.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
224.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
223.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
223.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
222.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
222.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
220.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
220.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
219.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
217.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
217.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
217.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
217.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
217.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
214.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
214.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
214.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
212.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
212.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
211.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
211.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
210.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
209.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
209.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
209.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
208.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
208.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
208.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
206.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
205.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
204.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
202.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
201.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
201.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
200.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
198.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
196.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
196.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
196.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
196.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
196.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
196.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
195.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
193.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
192.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
192.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
191.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
190.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
189.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
189.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
188.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
188.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
188.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
185.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
184.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
184.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
183.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
183.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
183.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
182.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
182.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
182.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
179.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
178.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
177.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
177.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
176.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
175.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
175.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
175.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
174.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
174.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
174.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
173.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
173.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
172.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
172.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
171.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
171.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
170.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
170.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
169.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
169.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
167.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
166.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
166.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
165.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
164.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
163.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
162.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
161.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
161.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
160.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
160.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
159.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
159.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
158.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
158.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
158.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
157.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
157.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
156.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
156.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
156.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
155.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
155.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
155.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
155.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
155.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
154.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
154.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
154.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
153.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
152.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
151.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
151.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
150.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
150.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
150.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
149.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
149.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
148.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
146.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
145.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
143.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
143.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
140.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
137.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
135.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
135.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
135.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
134.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
132.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
130.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
130.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
130.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
127.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
127.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
124.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
121.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
110.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
435.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 435.8
Samples: 4
Max nTPM: 494.6
Min nTPM: 405.1
Sample A
Male
417.1
Sample B
Male
426.5
Sample C
Female
405.1
Sample D
Female
494.6
Hippocampal formation nTPM: 370.7
Samples: 4
Max nTPM: 395.8
Min nTPM: 334.3
Sample A
Male
387.0
Sample B
Male
365.7
Sample C
Female
395.8
Sample D
Female
334.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.