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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARAF is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
83.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
81.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
77.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
73.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
72.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
69.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
69.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
68.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
68.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
66.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
64.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
64.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
63.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
63.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
62.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
61.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
60.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
60.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
60.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
59.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
59.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
57.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
57.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
56.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
54.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
54.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
53.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
53.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
53.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
53.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
51.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
50.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
50.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
49.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
49.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
49.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
48.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
48.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
47.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
47.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
46.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
46.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
46.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
46.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
45.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
45.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
45.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
45.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
45.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
44.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
44.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
44.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
43.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
42.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
42.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
41.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
41.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
40.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
40.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
40.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
40.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
40.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
40.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
40.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
39.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
39.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
39.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
38.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
38.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
38.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
38.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
38.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
37.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
36.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
35.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
35.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
35.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
35.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
33.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
33.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
32.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
32.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
32.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
29.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
28.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
26.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARAF is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.5
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
127.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
62.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
52.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
52.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
52.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
52.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
50.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
50.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
48.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
43.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
43.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
39.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
39.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
38.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
37.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
37.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
36.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
36.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
35.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
34.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
31.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
30.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
29.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.4
695
Tumor
0.8
487
Tumor
0.8
745
Tumor
0.7
865
Tumor
0.6
277
Tumor
0.6
411
Tumor
0.6
937
Tumor
0.5
393
Tumor
0.5
647
Tumor
0.5
513
Tumor
0.5
131
Tumor
0.5
523
Tumor
0.4
663
Tumor
0.4
147
Tumor
0.4
1027
Tumor
0.4
554
Normal
0.4
431
Tumor
0.4
285
Tumor
0.4
355
Tumor
0.4
313
Tumor
0.4
445
Tumor
0.4
557
Tumor
0.3
635
Tumor
0.3
1046
Normal
0.3
952
Normal
0.3
137
Tumor
0.3
518
Normal
0.3
423
Tumor
0.3
465
Tumor
0.3
697
Tumor
0.3
714
Normal
0.3
746
Normal
0.3
1043
Tumor
0.3
642
Normal
0.3
1014
Normal
0.3
861
Tumor
0.3
257
Tumor
0.3
533
Tumor
0.3
984
Normal
0.3
728
Normal
0.3
546
Normal
0.3
723
Tumor
0.3
463
Tumor
0.3
737
Tumor
0.3
132
Normal
0.3
698
Normal
0.3
482
Normal
0.3
1026
Normal
0.2
981
Tumor
0.2
473
Tumor
0.2
636
Normal
0.2
436
Normal
0.2
196
Normal
0.2
568
Normal
0.2
756
Normal
0.2
616
Normal
0.2
924
Normal
0.2
1044
Normal
0.2
472
Normal
0.2
432
Normal
0.2
412
Normal
0.2
618
Normal
0.2
926
Normal
0.2
228
Normal
0.2
564
Normal
0.2
738
Normal
0.2
882
Normal
0.2
357
Tumor
0.2
955
Tumor
0.2
978
Normal
0.2
456
Normal
0.2
957
Tumor
0.2
186
Normal
0.2
922
Normal
0.2
778
Normal
0.2
545
Tumor
0.2
785
Tumor
0.2
777
Tumor
0.2
572
Normal
0.2
484
Normal
0.2
571
Tumor
0.2
1016
Normal
0.2
138
Normal
0.2
648
Normal
0.2
135
Tumor
0.2
146
Normal
0.2
125
Tumor
0.2
742
Normal
0.2
136
Normal
0.2
426
Normal
0.2
162
Normal
0.2
464
Normal
0.2
628
Normal
0.2
218
Normal
0.2
858
Normal
0.2
982
Normal
0.2
112
Tumor
0.2
527
Tumor
0.2
446
Normal
0.2
466
Normal
0.2
468
Normal
0.2
744
Normal
0.2
462
Normal
0.2
696
Normal
0.2
966
Normal
0.2
558
Normal
0.2
615
Tumor
0.2
528
Normal
0.2
493
Tumor
0.2
148
Normal
0.2
474
Normal
0.2
968
Normal
0.2
824
Normal
0.2
222
Normal
0.2
862
Normal
0.1
786
Normal
0.1
866
Normal
0.1
448
Normal
0.1
356
Normal
0.1
878
Normal
0.1
327
Tumor
0.1
818
Normal
0.1
1022
Normal
0.1
983
Tumor
0.1
918
Normal
0.1
944
Normal
0.1
114
Normal
0.1
963
Tumor
0.1
816
Normal
0.1
722
Normal
0.1
874
Normal
0.1
172
Normal
0.1
873
Tumor
0.1
538
Normal
0.1
111
Normal
0.1
141
Tumor
0.1
342
Normal
0.1
142
Normal
0.1
685
Tumor
0.1
368
Normal
0.1
956
Normal
0.1
352
Normal
0.1
965
Tumor
0.1
574
Normal
0.1
452
Normal
0.1
392
Normal
0.1
553
Tumor
0.1
526
Normal
0.1
298
Normal
0.1
267
Tumor
0.1
627
Tumor
0.1
534
Normal
0.1
536
Normal
0.1
664
Normal
0.1
416
Normal
0.1
286
Normal
0.1
813
Tumor
0.1
481
Tumor
0.1
358
Normal
0.1
195
Tumor
0.1
864
Normal
0.1
938
Normal
0.1
884
Normal
0.1
171
Tumor
0.1
365
Tumor
0.1
353
Tumor
0.1
232
Normal
0.1
964
Normal
0.1
851
Tumor
0.1
617
Tumor
0.1
852
Normal
0.1
344
Normal
0.1
428
Normal
0.1
376
Normal
0.1
414
Normal
0.1
113
Tumor
0.1
514
Normal
0.1
161
Tumor
0.1
953
Tumor
0.1
424
Normal
0.1
461
Tumor
0.1
672
Normal
0.0
422
Normal
0.0
312
Normal
0.0
284
Normal
0.0
716
Normal
0.0
221
Tumor
0.0
1045
Tumor
0.0
537
Tumor
0.0
976
Normal
0.0
958
Normal
0.0
1042
Normal
0.0
128
Normal
0.0
258
Normal
0.0
494
Normal
0.0
375
Tumor
0.0
366
Normal
0.0
214
Normal
0.0
1028
Normal
0.0
488
Normal
0.0
362
Normal
0.0
272
Normal
0.0
925
Tumor
0.0
516
Normal
0.0
435
Tumor
0.0
666
Normal
0.0
515
Tumor
0.0
686
Normal
0.0
386
Normal
0.0
278
Normal
0.0
455
Tumor
0.0
713
Tumor
0.0
261
Tumor
0.0
573
Tumor
0.0
188
Normal
0.0
364
Normal
0.0
923
Tumor
0.0
916
Normal
0.0
396
Normal
0.0
954
Normal
0.0
1032
Normal
0.0
662
Normal
0.0
354
Normal
0.0
212
Normal
0.0
447
Tumor
0.0
394
Normal
0.0
641
Tumor
0.0
361
Tumor
0.0
187
Tumor
0.0
498
Normal
0.0
126
Normal
0.0
262
Normal
0.0
443
Tumor
0.0
434
Normal
0.0
881
Tumor
0.0
444
Normal
0.0
124
Normal
0.0
715
Tumor
0.0
741
Tumor
0.0
224
Normal
0.0
1031
Tumor
0.0
567
Tumor
0.0
915
Tumor
0.0
145
Tumor
0.0
563
Tumor
-0.1
211
Tumor
-0.1
223
Tumor
-0.1
912
Normal
-0.1
868
Normal
-0.1
913
Tumor
-0.1
328
Normal
-0.1
755
Tumor
-0.1
388
Normal
-0.1
314
Normal
-0.1
467
Tumor
-0.1
721
Tumor
-0.1
384
Normal
-0.1
283
Tumor
-0.1
185
Tumor
-0.1
883
Tumor
-0.1
857
Tumor
-0.1
814
Normal
-0.1
332
Normal
-0.1
727
Tumor
-0.1
943
Tumor
-0.1
271
Tumor
-0.1
497
Tumor
-0.1
1021
Tumor
-0.1
341
Tumor
-0.1
415
Tumor
-0.1
1025
Tumor
-0.1
363
Tumor
-0.1
975
Tumor
-0.1
524
Normal
-0.1
914
Normal
-0.1
227
Tumor
-0.1
478
Normal
-0.1
387
Tumor
-0.1
724
Normal
-0.1
951
Tumor
-0.2
492
Normal
-0.2
921
Tumor
-0.2
217
Tumor
-0.2
823
Tumor
-0.2
343
Tumor
-0.2
525
Tumor
-0.2
483
Tumor
-0.2
471
Tumor
-0.2
268
Normal
-0.2
977
Tumor
-0.2
535
Tumor
-0.2
127
Tumor
-0.2
425
Tumor
-0.2
383
Tumor
-0.2
421
Tumor
-0.2
491
Tumor
-0.2
351
Tumor
-0.2
815
Tumor
-0.2
385
Tumor
-0.2
451
Tumor
-0.2
1015
Tumor
-0.2
433
Tumor
-0.2
413
Tumor
-0.2
817
Tumor
-0.3
191
Tumor
-0.3
213
Tumor
-0.3
192
Normal
-0.3
671
Tumor
-0.3
395
Tumor
-0.3
297
Tumor
-0.3
231
Tumor
-0.3
311
Tumor
-0.3
123
Tumor
-0.4
867
Tumor
-0.4
427
Tumor
-0.4
967
Tumor
-0.4
917
Tumor
-0.4
477
Tumor
-0.4
367
Tumor
-0.4
863
Tumor
-0.4
391
Tumor
-0.4
665
Tumor
-0.4
661
Tumor
-0.4
911
Tumor
-0.5
331
Tumor
-0.6
1041
Tumor
-0.6
877
Tumor
-0.6
517
Tumor
-0.6
743
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
