MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA Brain:44.6 nTPM
GTEx:14.7 nTPM
FANTOM5:4.8 Scaled Tags Per Million
Pig:87.1 nTPM
Mouse:97.1 nTPM
Allen mouse:8.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200250300nCPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.8
2219 Male, age 76, both hemispheres 43.5
2019 Male, age 18, unknown 39.1
1827 Male, age 72, unknown 34.3
2411 Female, age 72, unknown 30.2
2828 Female, age 72, unknown 26.6
1870 Female, age 42, unknown 25.2
1833 Male, age 53, unknown 23.8
2666 Male, age 74, left hemisphere 22.0
2586 Male, age 75, left hemisphere 21.8
1830 Male, age 51, unknown 21.5
Dorsal raphe nucleus
nTPM: 30.1
2298 Female, age 72, unknown 44.2
2047 Male, age 72, unknown 31.4
1828 Male, age 53, unknown 28.5
2750 Male, age 76, both hemispheres 25.9
2016 Female, age 72, unknown 20.5
Inferior colliculus
nTPM: 36.7
2097 Female, age 72, unknown 46.5
1848 Female, age 42, unknown 36.2
2849 Male, age 72, unknown 35.3
1890 Male, age 53, unknown 29.0
Median raphe nucleus
nTPM: 42.7
2220 Male, age 76, midline 42.7
Periaquaductal grey, anterior
nTPM: 32.5
1795 Male, age 51, unknown 37.3
2502 Female, age 75, unknown 33.1
1947 Male, age 18, unknown 27.1
Periaquaductal grey, dorsal
nTPM: 30.3
1840 Male, age 53, unknown 39.4
2464 Female, age 72, unknown 30.5
1831 Male, age 72, unknown 25.8
2850 Male, age 76, both hemispheres 25.6
Periaquaductal grey, lateral
nTPM: 23.2
2053 Male, age 18, unknown 26.1
2140 Male, age 76, both hemispheres 23.2
2272 Male, age 74, both hemispheres 20.3
Pretectal area
nTPM: 39.8
1816 Male, age 51, unknown 60.7
2007 Male, age 72, unknown 57.7
1944 Female, age 72, unknown 54.7
1817 Female, age 42, unknown 54.1
1815 Male, age 53, unknown 42.4
2224 Female, age 72, unknown 36.1
2667 Female, age 75, unknown 35.1
2407 Male, age 75, both hemispheres 26.9
2316 Male, age 76, right hemisphere 25.7
2825 Male, age 18, unknown 24.8
2273 Male, age 74, both hemispheres 19.0
Red nucleus
nTPM: 22.3
2785 Male, age 18, unknown 33.8
1821 Female, age 72, unknown 29.2
2584 Male, age 75, left hemisphere 22.6
2503 Female, age 72, unknown 22.5
2588 Male, age 74, left hemisphere 22.0
1954 Female, age 42, unknown 21.3
2823 Male, age 76, right hemisphere 20.5
2227 Male, age 72, unknown 20.2
2769 Male, age 72, unknown 19.7
2725 Female, age 75, unknown 19.2
1865 Male, age 51, unknown 18.9
1904 Male, age 53, unknown 17.2
Substantia nigra
nTPM: 44.6
1916 Female, age 42, unknown 78.7
1941 Male, age 53, unknown 63.2
2409 Female, age 72, unknown 53.6
1889 Female, age 72, unknown 48.7
2241 Male, age 72, unknown 48.3
1851 Male, age 51, unknown 46.4
2665 Male, age 74, both hemispheres 38.9
2699 Male, age 18, unknown 29.3
2590 Female, age 75, unknown 20.4
2583 Male, age 75, right hemisphere 19.0
Superior colliculus
nTPM: 35.5
2668 Female, age 75, unknown 75.5
2087 Female, age 72, unknown 50.0
1895 Male, age 76, right hemisphere 40.0
1796 Male, age 53, unknown 38.4
2261 Male, age 18, unknown 33.2
1839 Male, age 51, unknown 31.4
2664 Male, age 75, both hemispheres 23.4
2587 Male, age 74, left hemisphere 22.1
1913 Female, age 42, unknown 21.5
1995 Male, age 72, unknown 19.0
Ventral tegmental area
nTPM: 36.3
2410 Female, age 72, unknown 52.5
1915 Female, age 42, unknown 45.3
2218 Male, age 76, both hemispheres 40.5
2223 Female, age 72, unknown 30.8
1942 Male, age 51, unknown 25.1
2021 Male, age 53, unknown 23.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.7
GTEx sample id Sample description nTPM
4.08.419.60.940.20102030405060708090
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 183

Max nTPM: 99.8
Min nTPM: 0.9
Std nTPM: 16.5
Median nTPM: 8.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 99.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 92.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 77.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 67.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 63.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 62.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 57.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 53.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 51.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 50.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 44.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 4.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.8
FF:10158-103A5 76 years, female 4.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 87.1
Pig sample Sample description nTPM
48.577.3103.530.7113.20102030405060708090100110
 		Substantia nigra
nTPM: 74.6
Samples: 4

Max nTPM: 113.2
Min nTPM: 30.7
Sample A Female 100.2
Sample B Female 54.4
Sample C Male 113.2
Sample D Male 30.7
63.575.896.156.5126.80102030405060708090100110120
 		Midbrain
nTPM: 83.8
Samples: 4

Max nTPM: 126.8
Min nTPM: 56.5
Sample A Female 65.8
Sample B Female 56.5
Sample C Male 126.8
Sample D Male 85.9
47.047.254.946.862.6051015202530354045505560
 		Periaqueductal gray
nTPM: 52.2
Samples: 3

Max nTPM: 62.6
Min nTPM: 46.8
Sample B Female 47.2
Sample C Male 62.6
Sample D Male 46.8
73.584.798.251.9127.00102030405060708090100110120
 		Superior colliculi
nTPM: 87.1
Samples: 4

Max nTPM: 127.0
Min nTPM: 51.9
Sample A Female 80.7
Sample B Female 51.9
Sample C Male 127.0
Sample D Male 88.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 97.1
Mouse sample Sample description nTPM
96.499.099.898.5100.50102030405060708090100
 		Midbrain
nTPM: 97.1
Samples: 4

Max nTPM: 100.5
Min nTPM: 90.0
Sample A Male 90.0
Sample B Male 98.5
Sample C Female 100.5
Sample D Female 99.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.4
69526605 Antisense, RP_050421_01_C04, Mouse strain C57BL/6J (56 days, male) 8.6
72340233 Antisense, RP_051101_02_B10, Mouse strain C57BL/6J (56 days, male) 8.1

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