HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:20.5 nTPM
HPA Brain:116.8 nTPM
GTEx:20.5 nTPM
FANTOM5:83.0 Scaled Tags Per Million
Pig:100.4 nTPM
Mouse:171.3 nTPM
Allen mouse:13.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200250300nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019828Antibody HPA019829Antibody CAB008559
Glial cells Not detectedMediumMedium
Neuronal cells MediumMediumMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 116.8
Sample id Sample description nTPM
Hippocampus
nTPM: 71.9
1898 Male, age 80, left hemisphere 119.0
1855 Male, age 76, left hemisphere 82.5
2621 Female, age 67, right hemisphere 81.5
2148 Female, age 91, left hemisphere 71.5
2529 Female, age 94, left hemisphere 39.8
1911 Female, age 85, right hemisphere 37.3
Dentate gyrus
nTPM: 76.6
1927 Female, age 91, both hemispheres 129.2
2010 Male, age 76, both hemispheres 81.9
2530 Female, age 94, left hemisphere 75.0
2246 Female, age 85, both hemispheres 66.6
2528 Male, age 74, both hemispheres 61.9
2531 Female, age 67, both hemispheres 45.0
Entorhinal gyrus
nTPM: 72.8
2764 Male, age 80, right hemisphere 94.2
2613 Female, age 94, left hemisphere 91.7
1938 Female, age 85, left hemisphere 83.7
2686 Male, age 75, right hemisphere 66.6
1787 Male, age 76, left hemisphere 59.6
2117 Female, age 91, right hemisphere 40.9
Hippocampus, CA1
nTPM: 74.7
2749 Male, age 80, left hemisphere 106.2
1873 Female, age 85, both hemispheres 101.6
2082 Female, age 91, right hemisphere 60.8
2527 Male, age 74, both hemispheres 54.6
2045 Male, age 76, both hemispheres 50.1
Hippocampus, CA2
nTPM: 76.0
1963 Male, age 80, left hemisphere 122.9
1892 Male, age 76, both hemispheres 120.1
2437 Female, age 94, left hemisphere 65.0
2113 Female, age 91, right hemisphere 54.0
1940 Female, age 85, left hemisphere 50.9
2249 Male, age 74, both hemispheres 43.4
Hippocampus, CA3
nTPM: 56.5
2861 Female, age 67, both hemispheres 68.3
2137 Male, age 80, left hemisphere 64.5
2620 Female, age 94, left hemisphere 59.3
2436 Male, age 74, both hemispheres 54.0
1867 Male, age 76, both hemispheres 49.8
1891 Female, age 85, both hemispheres 42.9
Parahippocampal cortex
nTPM: 79.1
1850 Male, age 80, both hemispheres 112.6
2693 Female, age 94, both hemispheres 89.9
2245 Female, age 91, both hemispheres 89.3
1933 Female, age 85, both hemispheres 88.8
1990 Female, age 91, right hemisphere 85.6
2532 Female, age 72, left hemisphere 70.6
2622 Female, age 67, right hemisphere 69.0
2018 Male, age 76, both hemispheres 68.8
2250 Female, age 67, right hemisphere 67.8
2692 Male, age 74, both hemispheres 48.5
Perirhinal gyrus
nTPM: 116.8
1847 Female, age 91, left hemisphere 155.7
1794 Male, age 80, right hemisphere 122.3
2521 Female, age 94, right hemisphere 108.4
1841 Female, age 85, right hemisphere 104.9
2848 Male, age 76, right hemisphere 92.5
Subiculum
nTPM: 46.8
1977 Female, age 85, both hemispheres 70.9
1901 Male, age 80, both hemispheres 48.0
2619 Male, age 74, both hemispheres 45.1
2438 Female, age 94, left hemisphere 43.3
2729 Female, age 91, right hemisphere 40.2
2042 Male, age 76, both hemispheres 33.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 20.5
GTEx sample id Sample description nTPM
8.115.224.51.347.10102030405060708090100110
Brain - Hippocampus
Average nTPM: 20.5
Samples: 255

Max nTPM: 113.6
Min nTPM: 1.3
Std nTPM: 18.8
Median nTPM: 15.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 113.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 104.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 101.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 94.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 84.5
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 80.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 72.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 71.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 70.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 65.4
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 62.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 83.0
FF:10169-103B7 60 years, female 100.7
FF:10153-102I9 76 years, female 65.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 100.4
Pig sample Sample description nTPM
79.584.389.574.595.70102030405060708090
 		Subiculum
nTPM: 84.7
Samples: 4

Max nTPM: 95.7
Min nTPM: 74.5
Sample A Female 95.7
Sample B Female 74.5
Sample C Male 81.2
Sample D Male 87.4
83.7108.2124.955.0130.20102030405060708090100110120130
 		Dorsal hippocampus
nTPM: 100.4
Samples: 4

Max nTPM: 130.2
Min nTPM: 55.0
Sample A Female 130.2
Sample B Female 123.1
Sample C Male 55.0
Sample D Male 93.3
88.289.393.787.290.00102030405060708090100
 		Entorhinal cortex
nTPM: 92.7
Samples: 4

Max nTPM: 104.9
Min nTPM: 87.2
Sample A Female 104.9
Sample B Female 90.0
Sample C Male 87.2
Sample D Male 88.5
79.2100.4120.067.9126.40102030405060708090100110120
 		Ventral hippocampus
nTPM: 98.8
Samples: 4

Max nTPM: 126.4
Min nTPM: 67.9
Sample A Female 126.4
Sample B Female 67.9
Sample C Male 117.9
Sample D Male 82.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 171.3
Mouse sample Sample description nTPM
121.8126.1138.2117.6128.9020406080100120140160
 		Entorhinal cortex
nTPM: 133.9
Samples: 4

Max nTPM: 165.9
Min nTPM: 117.6
Sample A Male 117.6
Sample B Male 123.2
Sample C Female 128.9
Sample D Female 165.9
151.6167.7187.4148.9201.0020406080100120140160180200
 		Hippocampal formation
nTPM: 171.3
Samples: 4

Max nTPM: 201.0
Min nTPM: 148.9
Sample A Male 152.5
Sample B Male 182.8
Sample C Female 201.0
Sample D Female 148.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 13.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.0
69526605 Antisense, RP_050421_01_C04, Mouse strain C57BL/6J (56 days, male) 13.5
72340233 Antisense, RP_051101_02_B10, Mouse strain C57BL/6J (56 days, male) 12.4

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