BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:10.5 nTPM
HPA Brain:96.1 nTPM
GTEx:10.5 nTPM
FANTOM5:113.6 Scaled Tags Per Million
Pig:50.9 nTPM
Mouse:104.0 nTPM
Allen mouse:6.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200250300nCPM

CAUDATE - Antibody stainingi
Antibody HPA019828Antibody HPA019829Antibody CAB008559
Glial cells Not detectedMediumMedium
Neuronal cells LowLowMedium






BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 96.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 22.3
1781 Male, age 74, unknown 47.6
2288 Male, age 75, left hemisphere 27.5
2481 Female, age 94, left hemisphere 25.9
1857 Female, age 85, left hemisphere 17.0
2290 Female, age 72, unknown 15.9
2846 Female, age 79, unknown 15.6
1854 Male, age 80, left hemisphere 15.5
2289 Male, age 61, right hemisphere 13.6
Globus pallidus, externus
nTPM: 14.2
2772 Female, age 79, unknown 27.6
2395 Male, age 75, both hemispheres 12.6
2646 Male, age 61, right hemisphere 11.7
2567 Female, age 72, unknown 10.0
1996 Male, age 80, right hemisphere 9.1
Globus pallidus, internus
nTPM: 13.2
1818 Male, age 74, unknown 22.0
2483 Female, age 94, right hemisphere 21.9
2566 Female, age 72, unknown 13.0
2037 Male, age 80, right hemisphere 12.5
2287 Male, age 75, right hemisphere 10.9
2778 Female, age 91, both hemispheres 6.9
2111 Female, age 85, right hemisphere 5.5
Nucleus accumbens
nTPM: 22.0
1856 Female, age 91, right hemisphere 34.3
2286 Male, age 75, left hemisphere 25.1
1783 Male, age 74, unknown 23.3
2824 Male, age 61, right hemisphere 22.1
2391 Female, age 94, left hemisphere 21.2
2698 Female, age 72, unknown 18.2
1806 Female, age 85, left hemisphere 16.3
2732 Male, age 80, right hemisphere 15.3
Nucleus basalis of Meynert
nTPM: 16.8
2484 Female, age 94, left hemisphere 22.8
2821 Male, age 75, both hemispheres 18.9
2393 Male, age 80, right hemisphere 15.6
2569 Male, age 61, both hemispheres 10.0
Nucleus of the diagonal band
nTPM: 95.2
1812 Female, age 91, both hemispheres 122.2
2775 Male, age 80, right hemisphere 108.7
2029 Male, age 61, right hemisphere 106.6
2195 Female, age 85, both hemispheres 106.0
1979 Male, age 74, unknown 32.5
Putamen
nTPM: 18.2
2482 Female, age 94, left hemisphere 24.5
1937 Female, age 91, right hemisphere 22.9
1838 Male, age 80, right hemisphere 18.9
2466 Female, age 79, unknown 18.1
2647 Male, age 75, left hemisphere 16.7
1829 Male, age 74, unknown 16.6
2489 Female, age 72, unknown 9.5
Septal nuclei
nTPM: 76.0
1960 Male, age 74, unknown 113.6
2031 Female, age 72, unknown 109.8
2009 Female, age 91, both hemispheres 98.6
2629 Female, age 94, right hemisphere 98.2
2059 Female, age 85, both hemispheres 61.6
2394 Male, age 61, left hemisphere 30.6
2199 Male, age 80, right hemisphere 19.7
Stria terminalis, bed nucleus
nTPM: 96.1
1974 Female, age 91, both hemispheres 135.4
2486 Female, age 94, both hemispheres 106.7
2201 Male, age 74, unknown 46.1

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 10.5
GTEx sample id Sample description nTPM
5.27.710.51.718.005101520253035404550556065
Brain - Caudate (basal ganglia)
Average nTPM: 8.4
Samples: 300

Max nTPM: 69.9
Min nTPM: 1.7
Std nTPM: 5.7
Median nTPM: 7.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 69.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 58.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 27.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 18.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 17.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 15.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 15.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 15.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 14.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 14.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 14.8
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7.110.313.82.420.8024681012141618202224262830
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.5
Samples: 285

Max nTPM: 31.4
Min nTPM: 2.4
Std nTPM: 4.3
Median nTPM: 10.3
GTEX-1N2EF-0011-R6a-SM-F33ZJ 60-69 years, male 31.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 26.3
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 20.8
GTEX-1LSVX-0011-R6a-SM-F3K4H 60-69 years, male 20.4
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 20.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 19.6
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 19.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 18.9
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 18.3
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 18.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 17.9
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5.17.810.51.816.90510152025303540
Brain - Putamen (basal ganglia)
Average nTPM: 8.2
Samples: 254

Max nTPM: 42.2
Min nTPM: 1.8
Std nTPM: 4.2
Median nTPM: 7.7
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 42.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 26.8
GTEX-1JMQJ-0011-R7b-SM-F2TA7 50-59 years, male 23.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 16.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 16.8
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 16.5
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 16.2
GTEX-11ZUS-0011-R7a-SM-GI4X5 30-39 years, male 15.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 15.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 14.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 14.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 113.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.0
FF:10164-103B2 76 years, female 35.0
Nucleus accumbens
Scaled Tags Per Million: 113.6
FF:10037-101F1 23-56 years, mixed 113.6
Putamen
Scaled Tags Per Million: 40.8
FF:10176-103C5 60 years, female 40.8
Globus pallidus
Scaled Tags Per Million: 16.5
FF:10175-103C4 60 years, female 19.6
FF:10161-103A8 76 years, female 13.4

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 50.9
Pig sample Sample description nTPM
40.942.544.240.445.0051015202530354045
 		Caudate
nTPM: 42.6
Samples: 4

Max nTPM: 45.0
Min nTPM: 40.4
Sample A Female 40.4
Sample B Female 43.9
Sample C Male 45.0
Sample D Male 41.1
38.340.345.337.455.00510152025303540455055
 		Putamen
nTPM: 43.3
Samples: 4

Max nTPM: 55.0
Min nTPM: 37.4
Sample A Female 38.6
Sample B Female 37.4
Sample C Male 55.0
Sample D Male 42.0
41.846.555.631.347.8010203040506070
 		Septum
nTPM: 50.9
Samples: 4

Max nTPM: 79.1
Min nTPM: 31.3
Sample A Female 45.3
Sample B Female 47.8
Sample C Male 79.1
Sample D Male 31.3
38.442.650.233.764.5051015202530354045505560
 		Ventral pallidum
nTPM: 45.9
Samples: 4

Max nTPM: 64.5
Min nTPM: 33.7
Sample A Female 45.4
Sample B Female 39.9
Sample C Male 64.5
Sample D Male 33.7

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 104.0
Mouse sample Sample description nTPM
62.270.379.761.883.901020304050607080
 		Caudate putamen
nTPM: 71.6
Samples: 4

Max nTPM: 83.9
Min nTPM: 61.8
Sample A Male 61.8
Sample B Male 62.3
Sample C Female 83.9
Sample D Female 78.3
90.197.8106.788.1112.20102030405060708090100110
 		Septum
nTPM: 99.0
Samples: 4

Max nTPM: 112.2
Min nTPM: 88.1
Sample A Male 112.2
Sample B Male 90.8
Sample C Female 104.9
Sample D Female 88.1
99.7104.6108.996.6110.10102030405060708090100110
 		Ventral forebrain
nTPM: 104.0
Samples: 4

Max nTPM: 110.1
Min nTPM: 96.6
Sample A Male 108.5
Sample B Male 100.7
Sample C Female 96.6
Sample D Female 110.1

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 6.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.8
69526605 Antisense, RP_050421_01_C04, Mouse strain C57BL/6J (56 days, male) 5.1
72340233 Antisense, RP_051101_02_B10, Mouse strain C57BL/6J (56 days, male) 4.5
Pallidum
Expression energy: 6.5
69526605 Antisense, RP_050421_01_C04, Mouse strain C57BL/6J (56 days, male) 6.5
72340233 Antisense, RP_051101_02_B10, Mouse strain C57BL/6J (56 days, male) 6.5

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