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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOP2B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOP2B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
231
Samples
Sample
Description
TPM
DO45239
0 years, male, NA, stage:2, alive, 870 days
60.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
54.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
50.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
37.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
28.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.3
283
Tumor
1.2
567
Tumor
1.1
743
Tumor
1.0
865
Tumor
0.9
661
Tumor
0.9
881
Tumor
0.9
737
Tumor
0.8
463
Tumor
0.8
983
Tumor
0.8
813
Tumor
0.8
385
Tumor
0.8
285
Tumor
0.8
517
Tumor
0.8
131
Tumor
0.7
425
Tumor
0.7
331
Tumor
0.7
937
Tumor
0.7
161
Tumor
0.7
965
Tumor
0.7
537
Tumor
0.7
1021
Tumor
0.7
671
Tumor
0.7
817
Tumor
0.6
943
Tumor
0.6
727
Tumor
0.6
515
Tumor
0.6
523
Tumor
0.6
975
Tumor
0.6
535
Tumor
0.6
125
Tumor
0.6
815
Tumor
0.6
112
Tumor
0.6
461
Tumor
0.5
724
Normal
0.5
863
Tumor
0.5
497
Tumor
0.5
211
Tumor
0.5
921
Tumor
0.5
297
Tumor
0.5
951
Tumor
0.5
814
Normal
0.5
917
Tumor
0.5
487
Tumor
0.5
483
Tumor
0.5
367
Tumor
0.4
647
Tumor
0.4
1041
Tumor
0.4
343
Tumor
0.4
685
Tumor
0.4
427
Tumor
0.4
471
Tumor
0.4
135
Tumor
0.4
785
Tumor
0.4
923
Tumor
0.4
857
Tumor
0.4
957
Tumor
0.4
777
Tumor
0.4
573
Tumor
0.4
443
Tumor
0.4
387
Tumor
0.4
277
Tumor
0.4
433
Tumor
0.3
963
Tumor
0.3
755
Tumor
0.3
455
Tumor
0.3
141
Tumor
0.3
127
Tumor
0.3
1043
Tumor
0.3
977
Tumor
0.3
171
Tumor
0.3
1031
Tumor
0.3
447
Tumor
0.3
421
Tumor
0.3
413
Tumor
0.3
391
Tumor
0.3
185
Tumor
0.3
435
Tumor
0.3
221
Tumor
0.2
375
Tumor
0.2
123
Tumor
0.2
213
Tumor
0.2
525
Tumor
0.2
445
Tumor
0.2
341
Tumor
0.2
311
Tumor
0.2
431
Tumor
0.2
227
Tumor
0.2
911
Tumor
0.2
883
Tumor
0.2
491
Tumor
0.2
257
Tumor
0.2
1045
Tumor
0.2
665
Tumor
0.2
1013
Tumor
0.2
877
Tumor
0.2
271
Tumor
0.1
641
Tumor
0.1
355
Tumor
0.1
411
Tumor
0.1
383
Tumor
0.1
267
Tumor
0.1
217
Tumor
0.1
721
Tumor
0.1
823
Tumor
0.1
147
Tumor
0.1
861
Tumor
0.1
615
Tumor
0.1
851
Tumor
0.1
444
Normal
0.1
363
Tumor
0.1
635
Tumor
0.1
384
Normal
0.1
913
Tumor
0.1
492
Normal
0.0
478
Normal
0.0
223
Tumor
0.0
563
Tumor
0.0
536
Normal
0.0
741
Tumor
0.0
1025
Tumor
0.0
192
Normal
0.0
873
Tumor
0.0
361
Tumor
0.0
187
Tumor
0.0
231
Tumor
0.0
434
Normal
0.0
137
Tumor
0.0
663
Tumor
0.0
867
Tumor
0.0
697
Tumor
0.0
467
Tumor
0.0
357
Tumor
0.0
268
Normal
0.0
713
Tumor
0.0
524
Normal
0.0
195
Tumor
0.0
146
Normal
0.0
477
Tumor
0.0
915
Tumor
0.0
715
Tumor
0.0
481
Tumor
-0.1
538
Normal
-0.1
745
Tumor
-0.1
966
Normal
-0.1
1015
Tumor
-0.1
978
Normal
-0.1
916
Normal
-0.1
261
Tumor
-0.1
953
Tumor
-0.1
498
Normal
-0.1
224
Normal
-0.1
451
Tumor
-0.1
188
Normal
-0.1
672
Normal
-0.1
113
Tumor
-0.1
395
Tumor
-0.1
662
Normal
-0.1
284
Normal
-0.1
423
Tumor
-0.1
852
Normal
-0.1
365
Tumor
-0.1
695
Tumor
-0.1
617
Tumor
-0.1
313
Tumor
-0.1
145
Tumor
-0.1
473
Tumor
-0.1
493
Tumor
-0.1
191
Tumor
-0.1
744
Normal
-0.2
553
Tumor
-0.2
386
Normal
-0.2
954
Normal
-0.2
878
Normal
-0.2
984
Normal
-0.2
114
Normal
-0.2
1044
Normal
-0.2
533
Tumor
-0.2
818
Normal
-0.2
778
Normal
-0.2
1014
Normal
-0.2
126
Normal
-0.2
352
Normal
-0.2
981
Tumor
-0.2
212
Normal
-0.2
976
Normal
-0.2
636
Normal
-0.2
138
Normal
-0.2
124
Normal
-0.2
142
Normal
-0.2
513
Tumor
-0.2
925
Tumor
-0.2
1026
Normal
-0.2
874
Normal
-0.2
557
Tumor
-0.2
344
Normal
-0.2
312
Normal
-0.2
393
Tumor
-0.2
628
Normal
-0.2
696
Normal
-0.2
545
Tumor
-0.2
448
Normal
-0.2
362
Normal
-0.2
272
Normal
-0.2
686
Normal
-0.2
332
Normal
-0.2
912
Normal
-0.2
527
Tumor
-0.2
571
Tumor
-0.2
364
Normal
-0.2
392
Normal
-0.2
412
Normal
-0.3
958
Normal
-0.3
938
Normal
-0.3
415
Tumor
-0.3
648
Normal
-0.3
944
Normal
-0.3
666
Normal
-0.3
356
Normal
-0.3
228
Normal
-0.3
262
Normal
-0.3
432
Normal
-0.3
132
Normal
-0.3
366
Normal
-0.3
664
Normal
-0.3
388
Normal
-0.3
354
Normal
-0.3
342
Normal
-0.3
446
Normal
-0.3
1028
Normal
-0.3
956
Normal
-0.3
924
Normal
-0.3
738
Normal
-0.3
111
Normal
-0.3
816
Normal
-0.3
136
Normal
-0.3
756
Normal
-0.3
456
Normal
-0.3
964
Normal
-0.3
516
Normal
-0.3
616
Normal
-0.3
1016
Normal
-0.3
394
Normal
-0.3
436
Normal
-0.3
824
Normal
-0.3
558
Normal
-0.3
864
Normal
-0.3
982
Normal
-0.3
396
Normal
-0.3
572
Normal
-0.3
618
Normal
-0.3
554
Normal
-0.3
1042
Normal
-0.3
858
Normal
-0.3
1032
Normal
-0.3
424
Normal
-0.3
162
Normal
-0.3
128
Normal
-0.3
952
Normal
-0.3
172
Normal
-0.3
723
Tumor
-0.3
422
Normal
-0.3
862
Normal
-0.3
526
Normal
-0.3
528
Normal
-0.3
642
Normal
-0.3
376
Normal
-0.3
1022
Normal
-0.3
428
Normal
-0.3
742
Normal
-0.3
214
Normal
-0.3
468
Normal
-0.3
967
Tumor
-0.3
232
Normal
-0.3
474
Normal
-0.3
416
Normal
-0.3
472
Normal
-0.3
716
Normal
-0.3
494
Normal
-0.3
328
Normal
-0.3
148
Normal
-0.3
574
Normal
-0.3
358
Normal
-0.4
728
Normal
-0.4
462
Normal
-0.4
278
Normal
-0.4
426
Normal
-0.4
218
Normal
-0.4
918
Normal
-0.4
722
Normal
-0.4
866
Normal
-0.4
298
Normal
-0.4
564
Normal
-0.4
414
Normal
-0.4
627
Tumor
-0.4
488
Normal
-0.4
968
Normal
-0.4
534
Normal
-0.4
546
Normal
-0.4
314
Normal
-0.4
186
Normal
-0.4
746
Normal
-0.4
368
Normal
-0.4
196
Normal
-0.4
1027
Tumor
-0.4
514
Normal
-0.4
466
Normal
-0.4
884
Normal
-0.4
926
Normal
-0.4
327
Tumor
-0.4
698
Normal
-0.4
464
Normal
-0.4
1046
Normal
-0.4
484
Normal
-0.4
518
Normal
-0.4
922
Normal
-0.4
222
Normal
-0.4
786
Normal
-0.4
258
Normal
-0.4
286
Normal
-0.4
714
Normal
-0.4
914
Normal
-0.4
868
Normal
-0.4
955
Tumor
-0.4
882
Normal
-0.5
568
Normal
-0.5
353
Tumor
-0.5
452
Normal
-0.5
482
Normal
-0.6
465
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
