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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TPD52 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
95.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
88.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
85.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
85.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
74.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
72.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
67.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
65.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
62.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
62.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
61.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
60.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
59.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
58.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
58.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
56.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
56.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
54.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
53.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
53.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
50.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
50.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
50.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
49.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
48.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
47.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
45.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
44.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
43.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
43.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
42.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
42.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
41.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
41.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
40.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
36.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
36.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
33.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
32.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
30.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
26.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TPD52 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
115.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
110.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
86.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
83.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
81.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
73.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
69.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
65.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
60.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
59.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
56.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
55.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
51.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
50.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
48.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
47.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
46.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
43.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
42.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
42.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
40.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
39.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
39.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
36.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
33.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
25.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
1.4
925
Tumor
1.4
745
Tumor
1.3
471
Tumor
1.3
951
Tumor
1.2
147
Tumor
1.2
343
Tumor
1.2
1021
Tumor
1.2
661
Tumor
1.2
483
Tumor
1.2
663
Tumor
1.2
443
Tumor
1.2
395
Tumor
1.1
231
Tumor
1.1
641
Tumor
1.0
341
Tumor
0.9
427
Tumor
0.9
635
Tumor
0.9
557
Tumor
0.9
567
Tumor
0.8
865
Tumor
0.8
983
Tumor
0.8
685
Tumor
0.8
813
Tumor
0.7
185
Tumor
0.7
525
Tumor
0.7
267
Tumor
0.7
533
Tumor
0.7
697
Tumor
0.7
445
Tumor
0.7
823
Tumor
0.7
917
Tumor
0.7
487
Tumor
0.6
537
Tumor
0.6
617
Tumor
0.6
545
Tumor
0.6
383
Tumor
0.6
1025
Tumor
0.5
923
Tumor
0.5
497
Tumor
0.5
493
Tumor
0.5
112
Tumor
0.5
187
Tumor
0.4
883
Tumor
0.4
375
Tumor
0.4
421
Tumor
0.4
135
Tumor
0.4
963
Tumor
0.4
573
Tumor
0.4
873
Tumor
0.4
513
Tumor
0.3
937
Tumor
0.3
313
Tumor
0.3
285
Tumor
0.3
271
Tumor
0.3
463
Tumor
0.3
385
Tumor
0.3
191
Tumor
0.3
127
Tumor
0.2
1045
Tumor
0.2
415
Tumor
0.2
515
Tumor
0.2
357
Tumor
0.2
814
Normal
0.2
721
Tumor
0.2
1031
Tumor
0.2
223
Tumor
0.2
311
Tumor
0.2
921
Tumor
0.2
131
Tumor
0.2
367
Tumor
0.2
851
Tumor
0.2
737
Tumor
0.1
913
Tumor
0.1
327
Tumor
0.1
211
Tumor
0.1
467
Tumor
0.1
137
Tumor
0.1
257
Tumor
0.1
431
Tumor
0.0
145
Tumor
0.0
435
Tumor
0.0
353
Tumor
0.0
413
Tumor
0.0
221
Tumor
0.0
615
Tumor
0.0
277
Tumor
0.0
881
Tumor
0.0
113
Tumor
0.0
528
Normal
0.0
553
Tumor
-0.1
171
Tumor
-0.1
724
Normal
-0.1
984
Normal
-0.1
123
Tumor
-0.1
387
Tumor
-0.1
817
Tumor
-0.1
523
Tumor
-0.1
563
Tumor
-0.1
283
Tumor
-0.1
125
Tumor
-0.1
451
Tumor
-0.1
627
Tumor
-0.1
778
Normal
-0.2
465
Tumor
-0.2
618
Normal
-0.2
477
Tumor
-0.2
455
Tumor
-0.2
481
Tumor
-0.2
484
Normal
-0.2
331
Tumor
-0.2
461
Tumor
-0.2
975
Tumor
-0.2
488
Normal
-0.2
665
Tumor
-0.2
698
Normal
-0.2
195
Tumor
-0.2
433
Tumor
-0.2
926
Normal
-0.2
863
Tumor
-0.3
755
Tumor
-0.3
786
Normal
-0.3
1022
Normal
-0.3
1043
Tumor
-0.3
636
Normal
-0.3
857
Tumor
-0.3
952
Normal
-0.3
361
Tumor
-0.3
1014
Normal
-0.3
965
Tumor
-0.3
554
Normal
-0.3
955
Tumor
-0.3
628
Normal
-0.3
218
Normal
-0.3
217
Tumor
-0.3
714
Normal
-0.3
815
Tumor
-0.3
351
Tumor
-0.3
232
Normal
-0.3
746
Normal
-0.3
967
Tumor
-0.3
922
Normal
-0.3
957
Tumor
-0.3
423
Tumor
-0.3
355
Tumor
-0.3
978
Normal
-0.3
944
Normal
-0.3
1041
Tumor
-0.3
723
Tumor
-0.3
428
Normal
-0.3
964
Normal
-0.3
1013
Tumor
-0.3
262
Normal
-0.3
715
Tumor
-0.3
498
Normal
-0.3
365
Tumor
-0.3
918
Normal
-0.3
616
Normal
-0.4
546
Normal
-0.4
716
Normal
-0.4
534
Normal
-0.4
968
Normal
-0.4
866
Normal
-0.4
953
Tumor
-0.4
111
Normal
-0.4
446
Normal
-0.4
1026
Normal
-0.4
1044
Normal
-0.4
1027
Tumor
-0.4
535
Tumor
-0.4
686
Normal
-0.4
436
Normal
-0.4
514
Normal
-0.4
1046
Normal
-0.4
868
Normal
-0.4
161
Tumor
-0.4
756
Normal
-0.4
414
Normal
-0.4
213
Tumor
-0.4
728
Normal
-0.4
1032
Normal
-0.4
664
Normal
-0.4
1016
Normal
-0.4
738
Normal
-0.4
473
Tumor
-0.4
494
Normal
-0.4
434
Normal
-0.5
478
Normal
-0.5
362
Normal
-0.5
982
Normal
-0.5
912
Normal
-0.5
456
Normal
-0.5
393
Tumor
-0.5
518
Normal
-0.5
526
Normal
-0.5
424
Normal
-0.5
858
Normal
-0.5
777
Tumor
-0.5
966
Normal
-0.5
816
Normal
-0.5
286
Normal
-0.5
258
Normal
-0.5
462
Normal
-0.5
482
Normal
-0.5
647
Tumor
-0.5
524
Normal
-0.5
272
Normal
-0.5
492
Normal
-0.5
572
Normal
-0.5
297
Tumor
-0.5
261
Tumor
-0.5
472
Normal
-0.5
312
Normal
-0.5
536
Normal
-0.5
298
Normal
-0.5
938
Normal
-0.5
977
Tumor
-0.5
558
Normal
-0.5
268
Normal
-0.5
368
Normal
-0.5
352
Normal
-0.5
924
Normal
-0.5
284
Normal
-0.5
727
Tumor
-0.5
516
Normal
-0.5
915
Tumor
-0.5
1028
Normal
-0.5
824
Normal
-0.5
196
Normal
-0.5
862
Normal
-0.6
874
Normal
-0.6
466
Normal
-0.6
914
Normal
-0.6
212
Normal
-0.6
742
Normal
-0.6
468
Normal
-0.6
818
Normal
-0.6
332
Normal
-0.6
364
Normal
-0.6
384
Normal
-0.6
432
Normal
-0.6
447
Tumor
-0.6
426
Normal
-0.6
148
Normal
-0.6
564
Normal
-0.6
126
Normal
-0.6
1042
Normal
-0.6
642
Normal
-0.6
464
Normal
-0.6
916
Normal
-0.6
884
Normal
-0.6
538
Normal
-0.6
1015
Tumor
-0.6
568
Normal
-0.6
852
Normal
-0.6
278
Normal
-0.6
864
Normal
-0.6
878
Normal
-0.6
648
Normal
-0.6
696
Normal
-0.6
314
Normal
-0.6
386
Normal
-0.6
376
Normal
-0.6
416
Normal
-0.6
224
Normal
-0.6
882
Normal
-0.6
861
Tumor
-0.6
574
Normal
-0.6
192
Normal
-0.7
162
Normal
-0.7
444
Normal
-0.7
214
Normal
-0.7
394
Normal
-0.7
392
Normal
-0.7
344
Normal
-0.7
128
Normal
-0.7
744
Normal
-0.7
412
Normal
-0.7
124
Normal
-0.7
141
Tumor
-0.7
722
Normal
-0.7
672
Normal
-0.7
222
Normal
-0.7
396
Normal
-0.7
695
Tumor
-0.7
911
Tumor
-0.7
188
Normal
-0.7
172
Normal
-0.7
956
Normal
-0.7
422
Normal
-0.7
114
Normal
-0.7
474
Normal
-0.7
391
Tumor
-0.8
328
Normal
-0.8
571
Tumor
-0.8
976
Normal
-0.8
146
Normal
-0.8
958
Normal
-0.8
132
Normal
-0.8
517
Tumor
-0.8
358
Normal
-0.8
448
Normal
-0.8
228
Normal
-0.8
354
Normal
-0.8
662
Normal
-0.8
136
Normal
-0.8
388
Normal
-0.8
142
Normal
-0.8
666
Normal
-0.8
356
Normal
-0.8
186
Normal
-0.8
954
Normal
-0.9
491
Tumor
-0.9
981
Tumor
-0.9
366
Normal
-0.9
867
Tumor
-0.9
342
Normal
-1.0
943
Tumor
-1.0
452
Normal
-1.0
138
Normal
-1.0
785
Tumor
-1.0
741
Tumor
-1.0
671
Tumor
-1.0
425
Tumor
-1.1
743
Tumor
-1.3
877
Tumor
-1.4
227
Tumor
-1.5
363
Tumor
-1.7
713
Tumor
-1.7
411
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
