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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOTCH3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
84.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
58.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
52.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
50.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
35.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOTCH3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
80.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
36.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
34.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
573
Tumor
1.5
385
Tumor
1.3
817
Tumor
1.3
823
Tumor
1.1
713
Tumor
1.0
975
Tumor
1.0
695
Tumor
0.9
696
Normal
0.8
744
Normal
0.8
641
Tumor
0.7
881
Tumor
0.7
395
Tumor
0.7
283
Tumor
0.7
728
Normal
0.6
536
Normal
0.6
211
Tumor
0.6
343
Tumor
0.6
455
Tumor
0.6
943
Tumor
0.6
311
Tumor
0.6
185
Tumor
0.6
145
Tumor
0.6
447
Tumor
0.6
223
Tumor
0.5
492
Normal
0.5
863
Tumor
0.5
297
Tumor
0.5
917
Tumor
0.5
877
Tumor
0.5
913
Tumor
0.5
344
Normal
0.5
358
Normal
0.5
491
Tumor
0.5
483
Tumor
0.5
671
Tumor
0.5
742
Normal
0.4
545
Tumor
0.4
963
Tumor
0.4
921
Tumor
0.4
982
Normal
0.4
352
Normal
0.4
363
Tumor
0.4
627
Tumor
0.4
351
Tumor
0.4
697
Tumor
0.4
354
Normal
0.4
883
Tumor
0.4
342
Normal
0.4
1045
Tumor
0.4
187
Tumor
0.4
958
Normal
0.4
716
Normal
0.4
857
Tumor
0.4
277
Tumor
0.4
498
Normal
0.4
192
Normal
0.3
331
Tumor
0.3
727
Tumor
0.3
421
Tumor
0.3
944
Normal
0.3
464
Normal
0.3
161
Tumor
0.3
984
Normal
0.3
954
Normal
0.3
642
Normal
0.3
355
Tumor
0.3
353
Tumor
0.3
965
Tumor
0.3
422
Normal
0.3
213
Tumor
0.2
526
Normal
0.2
415
Tumor
0.2
538
Normal
0.2
376
Normal
0.2
444
Normal
0.2
514
Normal
0.2
188
Normal
0.2
672
Normal
0.2
916
Normal
0.2
1015
Tumor
0.2
461
Tumor
0.2
386
Normal
0.2
862
Normal
0.2
953
Tumor
0.2
493
Tumor
0.2
375
Tumor
0.2
123
Tumor
0.2
478
Normal
0.2
195
Tumor
0.2
563
Tumor
0.2
663
Tumor
0.2
952
Normal
0.2
518
Normal
0.2
362
Normal
0.2
523
Tumor
0.2
938
Normal
0.2
446
Normal
0.2
816
Normal
0.2
978
Normal
0.2
923
Tumor
0.2
647
Tumor
0.2
428
Normal
0.2
456
Normal
0.1
957
Tumor
0.1
132
Normal
0.1
516
Normal
0.1
615
Tumor
0.1
956
Normal
0.1
1014
Normal
0.1
463
Tumor
0.1
423
Tumor
0.1
146
Normal
0.1
137
Tumor
0.1
436
Normal
0.1
864
Normal
0.1
131
Tumor
0.1
488
Normal
0.1
1044
Normal
0.1
191
Tumor
0.1
147
Tumor
0.1
465
Tumor
0.1
452
Normal
0.1
874
Normal
0.1
866
Normal
0.1
432
Normal
0.1
714
Normal
0.1
535
Tumor
0.1
664
Normal
0.1
218
Normal
0.1
314
Normal
0.1
722
Normal
0.1
925
Tumor
0.1
865
Tumor
0.1
136
Normal
0.1
327
Tumor
0.1
666
Normal
0.1
738
Normal
0.1
524
Normal
0.1
546
Normal
0.1
497
Tumor
0.1
882
Normal
0.1
365
Tumor
0.1
222
Normal
0.1
278
Normal
0.1
873
Tumor
0.1
466
Normal
0.0
513
Tumor
0.0
471
Tumor
0.0
221
Tumor
0.0
572
Normal
0.0
445
Tumor
0.0
366
Normal
0.0
868
Normal
0.0
648
Normal
0.0
981
Tumor
0.0
554
Normal
0.0
341
Tumor
0.0
617
Tumor
0.0
528
Normal
0.0
171
Tumor
0.0
186
Normal
0.0
568
Normal
0.0
884
Normal
0.0
224
Normal
0.0
878
Normal
0.0
384
Normal
0.0
468
Normal
0.0
867
Tumor
0.0
448
Normal
0.0
525
Tumor
0.0
138
Normal
0.0
481
Tumor
0.0
312
Normal
0.0
534
Normal
0.0
214
Normal
0.0
298
Normal
0.0
425
Tumor
0.0
217
Tumor
0.0
443
Tumor
0.0
616
Normal
0.0
387
Tumor
0.0
393
Tumor
0.0
564
Normal
0.0
723
Tumor
0.0
332
Normal
0.0
517
Tumor
0.0
424
Normal
-0.1
686
Normal
-0.1
537
Tumor
-0.1
142
Normal
-0.1
967
Tumor
-0.1
196
Normal
-0.1
955
Tumor
-0.1
212
Normal
-0.1
558
Normal
-0.1
574
Normal
-0.1
515
Tumor
-0.1
141
Tumor
-0.1
815
Tumor
-0.1
284
Normal
-0.1
861
Tumor
-0.1
484
Normal
-0.1
473
Tumor
-0.1
721
Tumor
-0.1
172
Normal
-0.1
391
Tumor
-0.1
112
Tumor
-0.1
494
Normal
-0.1
737
Tumor
-0.1
135
Tumor
-0.1
435
Tumor
-0.2
434
Normal
-0.2
1016
Normal
-0.2
392
Normal
-0.2
414
Normal
-0.2
553
Tumor
-0.2
433
Tumor
-0.2
914
Normal
-0.2
571
Tumor
-0.2
1046
Normal
-0.2
1025
Tumor
-0.2
968
Normal
-0.2
148
Normal
-0.2
912
Normal
-0.2
852
Normal
-0.2
477
Tumor
-0.2
286
Normal
-0.2
396
Normal
-0.2
1028
Normal
-0.2
474
Normal
-0.2
1032
Normal
-0.2
665
Tumor
-0.2
467
Tumor
-0.2
487
Tumor
-0.2
918
Normal
-0.2
472
Normal
-0.2
394
Normal
-0.2
162
Normal
-0.2
426
Normal
-0.2
228
Normal
-0.2
113
Tumor
-0.2
427
Tumor
-0.2
431
Tumor
-0.2
977
Tumor
-0.2
313
Tumor
-0.2
482
Normal
-0.2
743
Tumor
-0.3
114
Normal
-0.3
126
Normal
-0.3
383
Tumor
-0.3
976
Normal
-0.3
361
Tumor
-0.3
413
Tumor
-0.3
388
Normal
-0.3
124
Normal
-0.3
527
Tumor
-0.3
818
Normal
-0.3
462
Normal
-0.3
368
Normal
-0.3
357
Tumor
-0.3
662
Normal
-0.3
1022
Normal
-0.3
618
Normal
-0.3
685
Tumor
-0.3
367
Tumor
-0.3
983
Tumor
-0.3
922
Normal
-0.3
1043
Tumor
-0.3
924
Normal
-0.3
698
Normal
-0.3
1031
Tumor
-0.3
1013
Tumor
-0.3
1042
Normal
-0.4
227
Tumor
-0.4
125
Tumor
-0.4
635
Tumor
-0.4
111
Normal
-0.4
911
Tumor
-0.4
128
Normal
-0.4
557
Tumor
-0.4
741
Tumor
-0.4
567
Tumor
-0.4
636
Normal
-0.4
628
Normal
-0.4
1026
Normal
-0.4
127
Tumor
-0.5
533
Tumor
-0.5
951
Tumor
-0.5
915
Tumor
-0.5
364
Normal
-0.5
937
Tumor
-0.5
411
Tumor
-0.5
1021
Tumor
-0.5
451
Tumor
-0.5
926
Normal
-0.6
416
Normal
-0.6
285
Tumor
-0.6
824
Normal
-0.6
851
Tumor
-0.6
412
Normal
-0.6
715
Tumor
-0.7
661
Tumor
-0.7
858
Normal
-0.7
1041
Tumor
-0.8
966
Normal
-0.8
964
Normal
-0.8
328
Normal
-0.8
1027
Tumor
-1.0
724
Normal
-1.1
356
Normal
-1.1
231
Tumor
N/A
232
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
