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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XRCC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
142.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
52.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
39.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XRCC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.3
425
Tumor
1.3
967
Tumor
1.2
865
Tumor
1.1
463
Tumor
1.1
661
Tumor
1.0
957
Tumor
1.0
473
Tumor
1.0
497
Tumor
1.0
1013
Tumor
0.9
635
Tumor
0.9
1031
Tumor
0.9
351
Tumor
0.9
277
Tumor
0.8
983
Tumor
0.8
443
Tumor
0.8
123
Tumor
0.8
431
Tumor
0.8
355
Tumor
0.8
285
Tumor
0.8
517
Tumor
0.8
647
Tumor
0.7
567
Tumor
0.7
671
Tumor
0.7
545
Tumor
0.7
737
Tumor
0.7
975
Tumor
0.7
131
Tumor
0.7
695
Tumor
0.7
877
Tumor
0.7
357
Tumor
0.7
977
Tumor
0.6
271
Tumor
0.6
815
Tumor
0.6
921
Tumor
0.6
221
Tumor
0.6
411
Tumor
0.6
171
Tumor
0.6
685
Tumor
0.6
341
Tumor
0.5
727
Tumor
0.5
937
Tumor
0.5
523
Tumor
0.5
383
Tumor
0.5
1021
Tumor
0.5
161
Tumor
0.5
743
Tumor
0.5
715
Tumor
0.5
513
Tumor
0.5
483
Tumor
0.5
313
Tumor
0.5
951
Tumor
0.5
527
Tumor
0.4
231
Tumor
0.4
471
Tumor
0.4
211
Tumor
0.4
665
Tumor
0.4
861
Tumor
0.4
385
Tumor
0.4
923
Tumor
0.4
112
Tumor
0.4
777
Tumor
0.4
571
Tumor
0.4
213
Tumor
0.4
257
Tumor
0.4
663
Tumor
0.4
883
Tumor
0.4
785
Tumor
0.4
881
Tumor
0.3
391
Tumor
0.3
487
Tumor
0.3
433
Tumor
0.3
863
Tumor
0.3
297
Tumor
0.3
283
Tumor
0.3
331
Tumor
0.3
515
Tumor
0.3
873
Tumor
0.3
445
Tumor
0.3
363
Tumor
0.3
911
Tumor
0.3
261
Tumor
0.2
375
Tumor
0.2
953
Tumor
0.2
553
Tumor
0.2
465
Tumor
0.2
724
Normal
0.2
427
Tumor
0.2
557
Tumor
0.2
413
Tumor
0.2
573
Tumor
0.2
1015
Tumor
0.2
641
Tumor
0.2
1027
Tumor
0.2
353
Tumor
0.2
127
Tumor
0.2
817
Tumor
0.2
435
Tumor
0.2
1041
Tumor
0.2
963
Tumor
0.2
481
Tumor
0.1
867
Tumor
0.1
361
Tumor
0.1
447
Tumor
0.1
755
Tumor
0.1
915
Tumor
0.1
741
Tumor
0.1
477
Tumor
0.1
393
Tumor
0.1
421
Tumor
0.1
537
Tumor
0.1
493
Tumor
0.1
1025
Tumor
0.1
814
Normal
0.1
943
Tumor
0.1
141
Tumor
0.1
981
Tumor
0.1
311
Tumor
0.1
223
Tumor
0.1
227
Tumor
0.1
367
Tumor
0.1
913
Tumor
0.1
125
Tumor
0.1
813
Tumor
0.1
697
Tumor
0.1
525
Tumor
0.0
187
Tumor
0.0
563
Tumor
0.0
387
Tumor
0.0
455
Tumor
0.0
135
Tumor
0.0
185
Tumor
0.0
395
Tumor
0.0
267
Tumor
0.0
365
Tumor
0.0
415
Tumor
0.0
461
Tumor
0.0
217
Tumor
-0.1
491
Tumor
-0.1
721
Tumor
-0.1
147
Tumor
-0.1
384
Normal
-0.1
823
Tumor
-0.1
857
Tumor
-0.1
467
Tumor
-0.1
191
Tumor
-0.1
878
Normal
-0.1
533
Tumor
-0.1
343
Tumor
-0.1
192
Normal
-0.1
627
Tumor
-0.1
137
Tumor
-0.1
498
Normal
-0.1
516
Normal
-0.1
615
Tumor
-0.1
514
Normal
-0.1
925
Tumor
-0.1
917
Tumor
-0.1
868
Normal
-0.1
327
Tumor
-0.2
484
Normal
-0.2
376
Normal
-0.2
356
Normal
-0.2
423
Tumor
-0.2
196
Normal
-0.2
412
Normal
-0.2
1045
Tumor
-0.2
572
Normal
-0.2
538
Normal
-0.2
916
Normal
-0.2
534
Normal
-0.2
862
Normal
-0.2
478
Normal
-0.2
546
Normal
-0.2
488
Normal
-0.2
195
Tumor
-0.2
818
Normal
-0.2
448
Normal
-0.2
444
Normal
-0.2
224
Normal
-0.2
874
Normal
-0.2
113
Tumor
-0.2
756
Normal
-0.2
866
Normal
-0.2
286
Normal
-0.2
446
Normal
-0.2
142
Normal
-0.2
966
Normal
-0.2
366
Normal
-0.2
713
Tumor
-0.3
574
Normal
-0.3
958
Normal
-0.3
344
Normal
-0.3
492
Normal
-0.3
524
Normal
-0.3
698
Normal
-0.3
955
Tumor
-0.3
535
Tumor
-0.3
526
Normal
-0.3
1043
Tumor
-0.3
434
Normal
-0.3
744
Normal
-0.3
851
Tumor
-0.3
451
Tumor
-0.3
954
Normal
-0.3
284
Normal
-0.3
268
Normal
-0.3
1022
Normal
-0.3
1014
Normal
-0.3
312
Normal
-0.3
364
Normal
-0.3
984
Normal
-0.3
642
Normal
-0.3
518
Normal
-0.3
368
Normal
-0.3
672
Normal
-0.3
564
Normal
-0.3
686
Normal
-0.3
416
Normal
-0.3
786
Normal
-0.3
976
Normal
-0.3
222
Normal
-0.3
964
Normal
-0.3
922
Normal
-0.3
436
Normal
-0.3
778
Normal
-0.3
864
Normal
-0.3
924
Normal
-0.3
568
Normal
-0.3
528
Normal
-0.3
824
Normal
-0.3
938
Normal
-0.3
362
Normal
-0.3
982
Normal
-0.3
554
Normal
-0.3
145
Tumor
-0.3
1032
Normal
-0.3
146
Normal
-0.3
428
Normal
-0.3
272
Normal
-0.3
212
Normal
-0.4
1016
Normal
-0.4
728
Normal
-0.4
716
Normal
-0.4
968
Normal
-0.4
128
Normal
-0.4
162
Normal
-0.4
745
Tumor
-0.4
666
Normal
-0.4
258
Normal
-0.4
926
Normal
-0.4
298
Normal
-0.4
536
Normal
-0.4
558
Normal
-0.4
617
Tumor
-0.4
328
Normal
-0.4
858
Normal
-0.4
432
Normal
-0.4
228
Normal
-0.4
944
Normal
-0.4
342
Normal
-0.4
214
Normal
-0.4
628
Normal
-0.4
1044
Normal
-0.4
358
Normal
-0.4
352
Normal
-0.4
148
Normal
-0.4
914
Normal
-0.4
232
Normal
-0.4
884
Normal
-0.4
738
Normal
-0.4
114
Normal
-0.4
424
Normal
-0.4
1026
Normal
-0.4
742
Normal
-0.4
696
Normal
-0.4
188
Normal
-0.4
414
Normal
-0.4
664
Normal
-0.4
186
Normal
-0.4
482
Normal
-0.4
912
Normal
-0.4
494
Normal
-0.4
138
Normal
-0.4
332
Normal
-0.4
456
Normal
-0.4
314
Normal
-0.4
464
Normal
-0.4
392
Normal
-0.4
714
Normal
-0.4
956
Normal
-0.4
126
Normal
-0.5
354
Normal
-0.5
662
Normal
-0.5
1046
Normal
-0.5
1042
Normal
-0.5
218
Normal
-0.5
132
Normal
-0.5
723
Tumor
-0.5
124
Normal
-0.5
636
Normal
-0.5
136
Normal
-0.5
278
Normal
-0.5
746
Normal
-0.5
426
Normal
-0.5
472
Normal
-0.5
648
Normal
-0.5
978
Normal
-0.5
852
Normal
-0.5
172
Normal
-0.5
422
Normal
-0.5
1028
Normal
-0.5
111
Normal
-0.5
952
Normal
-0.5
462
Normal
-0.5
616
Normal
-0.5
474
Normal
-0.5
262
Normal
-0.5
816
Normal
-0.5
618
Normal
-0.5
452
Normal
-0.6
722
Normal
-0.6
388
Normal
-0.6
882
Normal
-0.6
918
Normal
-0.6
468
Normal
-0.6
466
Normal
-0.6
394
Normal
-0.7
396
Normal
-0.7
386
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
