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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MARK2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MARK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.7
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.2
737
Tumor
0.9
813
Tumor
0.9
814
Normal
0.8
815
Tumor
0.6
513
Tumor
0.6
917
Tumor
0.6
975
Tumor
0.6
777
Tumor
0.6
131
Tumor
0.6
283
Tumor
0.5
921
Tumor
0.5
311
Tumor
0.5
285
Tumor
0.5
743
Tumor
0.5
943
Tumor
0.5
967
Tumor
0.5
455
Tumor
0.5
641
Tumor
0.5
697
Tumor
0.5
471
Tumor
0.5
447
Tumor
0.5
527
Tumor
0.4
523
Tumor
0.4
258
Normal
0.4
925
Tumor
0.4
545
Tumor
0.4
297
Tumor
0.4
271
Tumor
0.4
515
Tumor
0.4
865
Tumor
0.4
1031
Tumor
0.4
415
Tumor
0.4
1045
Tumor
0.4
957
Tumor
0.3
881
Tumor
0.3
125
Tumor
0.3
331
Tumor
0.3
817
Tumor
0.3
536
Normal
0.3
877
Tumor
0.3
978
Normal
0.3
851
Tumor
0.3
627
Tumor
0.3
963
Tumor
0.3
498
Normal
0.3
863
Tumor
0.3
268
Normal
0.3
492
Normal
0.3
257
Tumor
0.3
262
Normal
0.3
553
Tumor
0.3
524
Normal
0.3
1021
Tumor
0.3
671
Tumor
0.3
533
Tumor
0.3
221
Tumor
0.3
538
Normal
0.3
916
Normal
0.3
425
Tumor
0.3
727
Tumor
0.3
343
Tumor
0.3
923
Tumor
0.3
617
Tumor
0.3
478
Normal
0.2
713
Tumor
0.2
147
Tumor
0.2
267
Tumor
0.2
463
Tumor
0.2
661
Tumor
0.2
491
Tumor
0.2
546
Normal
0.2
966
Normal
0.2
721
Tumor
0.2
518
Normal
0.2
487
Tumor
0.2
1042
Normal
0.2
968
Normal
0.2
355
Tumor
0.2
535
Tumor
0.2
1027
Tumor
0.2
461
Tumor
0.2
272
Normal
0.2
141
Tumor
0.2
385
Tumor
0.2
1025
Tumor
0.2
745
Tumor
0.2
434
Normal
0.2
517
Tumor
0.2
472
Normal
0.2
516
Normal
0.2
427
Tumor
0.2
635
Tumor
0.2
666
Normal
0.2
416
Normal
0.2
873
Tumor
0.2
1043
Tumor
0.2
375
Tumor
0.2
964
Normal
0.2
212
Normal
0.2
232
Normal
0.2
192
Normal
0.2
365
Tumor
0.2
135
Tumor
0.2
716
Normal
0.2
126
Normal
0.2
976
Normal
0.2
958
Normal
0.2
1028
Normal
0.1
852
Normal
0.1
537
Tumor
0.1
1041
Tumor
0.1
313
Tumor
0.1
554
Normal
0.1
983
Tumor
0.1
435
Tumor
0.1
714
Normal
0.1
686
Normal
0.1
924
Normal
0.1
474
Normal
0.1
484
Normal
0.1
951
Tumor
0.1
558
Normal
0.1
493
Tumor
0.1
364
Normal
0.1
648
Normal
0.1
1046
Normal
0.1
413
Tumor
0.1
884
Normal
0.1
412
Normal
0.1
955
Tumor
0.1
937
Tumor
0.1
494
Normal
0.1
1044
Normal
0.1
328
Normal
0.1
1014
Normal
0.1
956
Normal
0.1
857
Tumor
0.1
785
Tumor
0.1
1016
Normal
0.1
715
Tumor
0.1
528
Normal
0.1
628
Normal
0.1
977
Tumor
0.1
778
Normal
0.1
823
Tumor
0.1
663
Tumor
0.1
984
Normal
0.1
918
Normal
0.1
481
Tumor
0.1
223
Tumor
0.1
213
Tumor
0.1
525
Tumor
0.1
448
Normal
0.1
142
Normal
0.1
952
Normal
0.1
664
Normal
0.1
913
Tumor
0.1
534
Normal
0.1
698
Normal
0.1
137
Tumor
0.1
696
Normal
0.1
647
Tumor
0.1
277
Tumor
0.1
665
Tumor
0.1
866
Normal
0.1
444
Normal
0.1
443
Tumor
0.1
411
Tumor
0.1
672
Normal
0.1
462
Normal
0.1
421
Tumor
0.1
363
Tumor
0.1
146
Normal
0.1
526
Normal
0.1
488
Normal
0.1
132
Normal
0.1
514
Normal
0.1
386
Normal
0.0
188
Normal
0.0
286
Normal
0.0
723
Tumor
0.0
1015
Tumor
0.0
572
Normal
0.0
228
Normal
0.0
722
Normal
0.0
926
Normal
0.0
954
Normal
0.0
938
Normal
0.0
218
Normal
0.0
1026
Normal
0.0
227
Tumor
0.0
483
Tumor
0.0
618
Normal
0.0
982
Normal
0.0
473
Tumor
0.0
195
Tumor
0.0
497
Tumor
0.0
728
Normal
0.0
456
Normal
0.0
874
Normal
0.0
138
Normal
0.0
312
Normal
0.0
816
Normal
0.0
922
Normal
0.0
136
Normal
0.0
786
Normal
0.0
111
Normal
0.0
284
Normal
0.0
1032
Normal
0.0
431
Tumor
0.0
882
Normal
0.0
222
Normal
0.0
114
Normal
0.0
756
Normal
0.0
327
Tumor
0.0
468
Normal
0.0
214
Normal
0.0
563
Tumor
0.0
1022
Normal
0.0
341
Tumor
0.0
356
Normal
0.0
261
Tumor
0.0
224
Normal
0.0
864
Normal
0.0
568
Normal
0.0
642
Normal
0.0
662
Normal
0.0
616
Normal
0.0
914
Normal
0.0
695
Tumor
0.0
742
Normal
0.0
477
Tumor
0.0
944
Normal
0.0
392
Normal
0.0
464
Normal
0.0
124
Normal
0.0
574
Normal
0.0
128
Normal
0.0
861
Tumor
0.0
217
Tumor
0.0
878
Normal
0.0
557
Tumor
0.0
912
Normal
0.0
466
Normal
0.0
436
Normal
0.0
482
Normal
0.0
965
Tumor
0.0
564
Normal
0.0
396
Normal
0.0
362
Normal
0.0
573
Tumor
0.0
298
Normal
0.0
445
Tumor
-0.1
467
Tumor
-0.1
858
Normal
-0.1
824
Normal
-0.1
746
Normal
-0.1
862
Normal
-0.1
145
Tumor
-0.1
915
Tumor
-0.1
187
Tumor
-0.1
911
Tumor
-0.1
161
Tumor
-0.1
446
Normal
-0.1
394
Normal
-0.1
428
Normal
-0.1
738
Normal
-0.1
744
Normal
-0.1
724
Normal
-0.1
185
Tumor
-0.1
196
Normal
-0.1
868
Normal
-0.1
123
Tumor
-0.1
191
Tumor
-0.1
432
Normal
-0.1
388
Normal
-0.1
383
Tumor
-0.1
414
Normal
-0.1
393
Tumor
-0.1
883
Tumor
-0.1
148
Normal
-0.1
278
Normal
-0.1
367
Tumor
-0.1
113
Tumor
-0.1
395
Tumor
-0.1
162
Normal
-0.1
615
Tumor
-0.1
186
Normal
-0.1
231
Tumor
-0.1
433
Tumor
-0.1
387
Tumor
-0.1
424
Normal
-0.1
452
Normal
-0.1
818
Normal
-0.2
422
Normal
-0.2
352
Normal
-0.2
755
Tumor
-0.2
391
Tumor
-0.2
357
Tumor
-0.2
636
Normal
-0.2
451
Tumor
-0.2
423
Tumor
-0.2
376
Normal
-0.2
172
Normal
-0.2
353
Tumor
-0.2
981
Tumor
-0.2
127
Tumor
-0.2
1013
Tumor
-0.2
366
Normal
-0.2
171
Tumor
-0.2
332
Normal
-0.2
567
Tumor
-0.2
384
Normal
-0.2
354
Normal
-0.2
867
Tumor
-0.2
465
Tumor
-0.2
953
Tumor
-0.2
314
Normal
-0.2
426
Normal
-0.2
685
Tumor
-0.3
344
Normal
-0.3
112
Tumor
-0.3
361
Tumor
-0.3
368
Normal
-0.3
358
Normal
-0.3
351
Tumor
-0.3
741
Tumor
-0.4
571
Tumor
-0.4
342
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
