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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SREBF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
155.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
149.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
142.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
115.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
107.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
102.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
98.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
92.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
91.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
90.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
84.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
77.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
77.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
76.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
73.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
73.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
68.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
67.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
64.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
64.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
64.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
62.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
62.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
62.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
60.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
59.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
56.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
55.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
54.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
54.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
53.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
52.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
52.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
52.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
50.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
49.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
49.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
48.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
47.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
47.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
47.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
47.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
46.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
46.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
45.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
45.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
45.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
45.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
44.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
42.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
41.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
39.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
39.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
39.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
37.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
35.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
34.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
34.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
33.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
32.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
32.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
32.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
31.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
31.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
30.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SREBF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.3
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
125.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
115.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
114.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
108.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
102.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
95.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
94.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
92.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
87.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
87.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
85.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
79.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
79.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
78.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
76.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
75.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
73.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
69.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
65.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
65.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
64.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
61.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
61.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
61.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
61.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
60.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
60.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
59.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
59.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
58.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
55.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
55.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
54.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
51.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
51.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
50.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
50.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
49.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
49.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
49.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
48.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
48.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
46.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
46.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
45.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
45.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
45.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
44.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
44.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
43.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
42.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
41.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
41.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
41.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
41.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
40.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
37.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
34.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
34.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
33.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
30.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.4
663
Tumor
1.1
135
Tumor
1.0
727
Tumor
0.9
745
Tumor
0.9
937
Tumor
0.9
813
Tumor
0.8
737
Tumor
0.8
147
Tumor
0.8
112
Tumor
0.8
411
Tumor
0.8
951
Tumor
0.7
617
Tumor
0.7
755
Tumor
0.7
187
Tumor
0.7
487
Tumor
0.7
815
Tumor
0.7
1043
Tumor
0.7
383
Tumor
0.6
943
Tumor
0.6
863
Tumor
0.6
865
Tumor
0.6
777
Tumor
0.6
376
Normal
0.6
148
Normal
0.6
817
Tumor
0.5
231
Tumor
0.5
1025
Tumor
0.5
343
Tumor
0.5
913
Tumor
0.5
883
Tumor
0.5
912
Normal
0.4
528
Normal
0.4
955
Tumor
0.4
145
Tumor
0.4
473
Tumor
0.4
553
Tumor
0.4
568
Normal
0.4
355
Tumor
0.4
1031
Tumor
0.4
672
Normal
0.4
515
Tumor
0.4
312
Normal
0.4
956
Normal
0.4
127
Tumor
0.4
365
Tumor
0.4
574
Normal
0.4
915
Tumor
0.4
984
Normal
0.4
636
Normal
0.4
957
Tumor
0.4
341
Tumor
0.4
452
Normal
0.3
918
Normal
0.3
982
Normal
0.3
425
Tumor
0.3
222
Normal
0.3
186
Normal
0.3
466
Normal
0.3
161
Tumor
0.3
884
Normal
0.3
285
Tumor
0.3
477
Tumor
0.3
661
Tumor
0.3
983
Tumor
0.3
327
Tumor
0.3
952
Normal
0.3
572
Normal
0.3
271
Tumor
0.3
415
Tumor
0.3
563
Tumor
0.3
196
Normal
0.3
873
Tumor
0.3
416
Normal
0.3
363
Tumor
0.3
938
Normal
0.3
358
Normal
0.2
172
Normal
0.2
131
Tumor
0.2
513
Tumor
0.2
283
Tumor
0.2
497
Tumor
0.2
267
Tumor
0.2
858
Normal
0.2
224
Normal
0.2
1016
Normal
0.2
558
Normal
0.2
146
Normal
0.2
642
Normal
0.2
463
Tumor
0.2
864
Normal
0.2
641
Tumor
0.2
857
Tumor
0.2
878
Normal
0.2
188
Normal
0.2
136
Normal
0.2
814
Normal
0.2
824
Normal
0.2
132
Normal
0.2
364
Normal
0.2
546
Normal
0.2
353
Tumor
0.2
446
Normal
0.2
221
Tumor
0.2
431
Tumor
0.2
258
Normal
0.2
412
Normal
0.2
851
Tumor
0.2
685
Tumor
0.2
1015
Tumor
0.2
228
Normal
0.2
218
Normal
0.2
278
Normal
0.2
954
Normal
0.2
286
Normal
0.2
695
Tumor
0.2
976
Normal
0.1
534
Normal
0.1
567
Tumor
0.1
1041
Tumor
0.1
921
Tumor
0.1
356
Normal
0.1
435
Tumor
0.1
162
Normal
0.1
277
Tumor
0.1
744
Normal
0.1
191
Tumor
0.1
874
Normal
0.1
484
Normal
0.1
138
Normal
0.1
628
Normal
0.1
445
Tumor
0.1
742
Normal
0.1
538
Normal
0.1
352
Normal
0.1
862
Normal
0.1
728
Normal
0.1
1026
Normal
0.1
923
Tumor
0.1
573
Tumor
0.1
1046
Normal
0.1
882
Normal
0.1
1028
Normal
0.1
494
Normal
0.1
723
Tumor
0.1
516
Normal
0.1
975
Tumor
0.1
616
Normal
0.1
212
Normal
0.1
223
Tumor
0.1
171
Tumor
0.1
914
Normal
0.1
213
Tumor
0.1
523
Tumor
0.0
746
Normal
0.0
925
Tumor
0.0
362
Normal
0.0
778
Normal
0.0
924
Normal
0.0
284
Normal
0.0
715
Tumor
0.0
978
Normal
0.0
464
Normal
0.0
518
Normal
0.0
1014
Normal
0.0
517
Tumor
0.0
1044
Normal
0.0
142
Normal
0.0
214
Normal
0.0
468
Normal
0.0
421
Tumor
0.0
227
Tumor
0.0
866
Normal
0.0
816
Normal
0.0
474
Normal
0.0
698
Normal
0.0
426
Normal
0.0
195
Tumor
0.0
492
Normal
0.0
1022
Normal
0.0
964
Normal
0.0
696
Normal
0.0
268
Normal
0.0
185
Tumor
0.0
944
Normal
0.0
738
Normal
0.0
488
Normal
0.0
217
Tumor
0.0
818
Normal
0.0
535
Tumor
0.0
554
Normal
0.0
823
Tumor
0.0
662
Normal
0.0
881
Tumor
0.0
526
Normal
0.0
564
Normal
0.0
211
Tumor
0.0
328
Normal
0.0
462
Normal
0.0
384
Normal
0.0
545
Tumor
0.0
721
Tumor
0.0
461
Tumor
0.0
443
Tumor
0.0
192
Normal
0.0
756
Normal
0.0
141
Tumor
-0.1
664
Normal
-0.1
344
Normal
-0.1
1042
Normal
-0.1
111
Normal
-0.1
434
Normal
-0.1
482
Normal
-0.1
311
Tumor
-0.1
786
Normal
-0.1
877
Tumor
-0.1
313
Tumor
-0.1
432
Normal
-0.1
514
Normal
-0.1
868
Normal
-0.1
456
Normal
-0.1
472
Normal
-0.1
413
Tumor
-0.1
524
Normal
-0.1
424
Normal
-0.1
262
Normal
-0.1
478
Normal
-0.1
1021
Tumor
-0.1
916
Normal
-0.1
361
Tumor
-0.1
414
Normal
-0.1
852
Normal
-0.1
126
Normal
-0.1
436
Normal
-0.1
635
Tumor
-0.1
375
Tumor
-0.1
498
Normal
-0.1
428
Normal
-0.1
536
Normal
-0.1
128
Normal
-0.1
354
Normal
-0.1
713
Tumor
-0.1
722
Normal
-0.1
1032
Normal
-0.1
527
Tumor
-0.1
557
Tumor
-0.1
137
Tumor
-0.1
917
Tumor
-0.1
481
Tumor
-0.1
926
Normal
-0.1
665
Tumor
-0.1
965
Tumor
-0.2
743
Tumor
-0.2
357
Tumor
-0.2
671
Tumor
-0.2
861
Tumor
-0.2
447
Tumor
-0.2
232
Normal
-0.2
444
Normal
-0.2
422
Normal
-0.2
966
Normal
-0.2
483
Tumor
-0.2
648
Normal
-0.2
467
Tumor
-0.2
911
Tumor
-0.2
272
Normal
-0.2
114
Normal
-0.2
714
Normal
-0.2
666
Normal
-0.2
716
Normal
-0.2
314
Normal
-0.2
113
Tumor
-0.2
968
Normal
-0.2
618
Normal
-0.2
124
Normal
-0.2
627
Tumor
-0.2
297
Tumor
-0.2
342
Normal
-0.2
261
Tumor
-0.3
981
Tumor
-0.3
367
Tumor
-0.3
471
Tumor
-0.3
427
Tumor
-0.3
1045
Tumor
-0.3
958
Normal
-0.3
537
Tumor
-0.3
465
Tumor
-0.3
724
Normal
-0.3
977
Tumor
-0.3
257
Tumor
-0.3
125
Tumor
-0.3
967
Tumor
-0.3
351
Tumor
-0.3
332
Normal
-0.3
615
Tumor
-0.3
686
Normal
-0.3
647
Tumor
-0.3
423
Tumor
-0.3
123
Tumor
-0.3
571
Tumor
-0.4
493
Tumor
-0.4
785
Tumor
-0.4
433
Tumor
-0.4
1013
Tumor
-0.4
298
Normal
-0.4
1027
Tumor
-0.4
922
Normal
-0.4
331
Tumor
-0.4
451
Tumor
-0.4
963
Tumor
-0.4
525
Tumor
-0.4
448
Normal
-0.5
697
Tumor
-0.5
491
Tumor
-0.5
953
Tumor
-0.5
455
Tumor
-0.5
366
Normal
-0.6
741
Tumor
-0.7
867
Tumor
-0.8
368
Normal
-1.7
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
