MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.6 nTPM
HPA Brain:99.8 nTPM
GTEx:42.6 nTPM
FANTOM5:56.3 Scaled Tags Per Million
Pig:28.7 nTPM
Mouse:17.1 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 99.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.3
2586 Male, age 75, left hemisphere 104.4
1870 Female, age 42, unknown 101.2
1830 Male, age 51, unknown 89.5
2666 Male, age 74, left hemisphere 85.6
2019 Male, age 18, unknown 84.8
1833 Male, age 53, unknown 81.5
2828 Female, age 72, unknown 75.8
2411 Female, age 72, unknown 74.7
1827 Male, age 72, unknown 65.2
2219 Male, age 76, both hemispheres 50.5
Dorsal raphe nucleus
nTPM: 75.6
2750 Male, age 76, both hemispheres 101.1
2047 Male, age 72, unknown 92.5
1828 Male, age 53, unknown 64.5
2016 Female, age 72, unknown 62.8
2298 Female, age 72, unknown 57.4
Inferior colliculus
nTPM: 64.5
1848 Female, age 42, unknown 70.1
1890 Male, age 53, unknown 68.4
2849 Male, age 72, unknown 66.0
2097 Female, age 72, unknown 53.6
Median raphe nucleus
nTPM: 76.3
2220 Male, age 76, midline 76.3
Periaquaductal grey, anterior
nTPM: 57.0
2502 Female, age 75, unknown 60.3
1795 Male, age 51, unknown 59.2
1947 Male, age 18, unknown 51.6
Periaquaductal grey, dorsal
nTPM: 56.4
2464 Female, age 72, unknown 62.0
1831 Male, age 72, unknown 61.7
1840 Male, age 53, unknown 56.6
2850 Male, age 76, both hemispheres 45.5
Periaquaductal grey, lateral
nTPM: 58.0
2053 Male, age 18, unknown 69.2
2272 Male, age 74, both hemispheres 55.7
2140 Male, age 76, both hemispheres 49.0
Pretectal area
nTPM: 62.4
2825 Male, age 18, unknown 74.1
2407 Male, age 75, both hemispheres 73.7
2224 Female, age 72, unknown 68.3
2316 Male, age 76, right hemisphere 65.6
2667 Female, age 75, unknown 64.6
2007 Male, age 72, unknown 63.0
1817 Female, age 42, unknown 61.2
1815 Male, age 53, unknown 58.9
2273 Male, age 74, both hemispheres 55.2
1944 Female, age 72, unknown 52.9
1816 Male, age 51, unknown 48.7
Red nucleus
nTPM: 99.8
2588 Male, age 74, left hemisphere 117.7
1865 Male, age 51, unknown 113.4
2769 Male, age 72, unknown 107.6
2823 Male, age 76, right hemisphere 107.1
1954 Female, age 42, unknown 104.1
2584 Male, age 75, left hemisphere 103.7
2227 Male, age 72, unknown 100.7
1904 Male, age 53, unknown 95.1
1821 Female, age 72, unknown 91.5
2785 Male, age 18, unknown 88.9
2503 Female, age 72, unknown 88.4
2725 Female, age 75, unknown 79.2
Substantia nigra
nTPM: 77.7
2583 Male, age 75, right hemisphere 91.7
1941 Male, age 53, unknown 86.9
1916 Female, age 42, unknown 83.1
2665 Male, age 74, both hemispheres 82.6
1851 Male, age 51, unknown 80.6
2699 Male, age 18, unknown 78.1
2590 Female, age 75, unknown 78.0
2409 Female, age 72, unknown 69.7
1889 Female, age 72, unknown 66.2
2241 Male, age 72, unknown 60.0
Superior colliculus
nTPM: 67.7
1913 Female, age 42, unknown 81.8
2664 Male, age 75, both hemispheres 78.3
2668 Female, age 75, unknown 75.2
2587 Male, age 74, left hemisphere 72.1
1796 Male, age 53, unknown 67.9
1839 Male, age 51, unknown 67.2
1995 Male, age 72, unknown 66.1
1895 Male, age 76, right hemisphere 60.6
2087 Female, age 72, unknown 54.6
2261 Male, age 18, unknown 53.1
Ventral tegmental area
nTPM: 82.9
2223 Female, age 72, unknown 122.3
2021 Male, age 53, unknown 81.3
2410 Female, age 72, unknown 76.4
1942 Male, age 51, unknown 73.9
1915 Female, age 42, unknown 71.9
2218 Male, age 76, both hemispheres 71.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.6
Samples: 139

Max nTPM: 91.7
Min nTPM: 21.6
Std nTPM: 13.3
Median nTPM: 40.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 91.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 82.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 81.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 80.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 77.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 76.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 74.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 70.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 66.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 66.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 60.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 56.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.3
FF:10158-103A5 76 years, female 56.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.8
Samples: 4

Max nTPM: 38.6
Min nTPM: 18.4
Sample A Female 24.4
Sample B Female 18.4
Sample C Male 21.8
Sample D Male 38.6
Midbrain
nTPM: 28.7
Samples: 4

Max nTPM: 40.8
Min nTPM: 23.0
Sample A Female 40.8
Sample B Female 23.2
Sample C Male 27.9
Sample D Male 23.0
Periaqueductal gray
nTPM: 19.3
Samples: 3

Max nTPM: 20.3
Min nTPM: 17.5
Sample B Female 20.0
Sample C Male 17.5
Sample D Male 20.3
Superior colliculi
nTPM: 26.3
Samples: 4

Max nTPM: 32.2
Min nTPM: 20.0
Sample A Female 22.7
Sample B Female 20.0
Sample C Male 30.1
Sample D Male 32.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.1
Samples: 4

Max nTPM: 18.5
Min nTPM: 16.5
Sample A Male 16.5
Sample B Male 16.6
Sample C Female 16.7
Sample D Female 18.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
70301276 Antisense, RP_050309_02_C11, Mouse strain C57BL/6J (56 days, male) 2.0
69013365 Antisense, RP_050309_02_C11, Mouse strain C57BL/6J (56 days, male) 1.4

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