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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPL31 is not prognostic in Pancreatic Adenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2537.4
Number of samples
176
Samples
Sample
Description
TPM
TCGA-IB-7886-01A
0 years, male, white, stage:Stage IIB, dead, 123 days
5535.7
TCGA-IB-A7M4-01A
0 years, male, white, stage:Stage IIB, alive, 483 days
4508.0
TCGA-HZ-A9TJ-01A
0 years, male, white, stage:Stage IV, alive, 603 days
4504.3
TCGA-Z5-AAPL-01A
0 years, female, white, stage:Stage IIA, alive, 467 days
4346.0
TCGA-IB-7644-01A
0 years, female, white, stage:Stage IV, dead, 394 days
4304.4
TCGA-3E-AAAZ-01A
0 years, male, white, stage:Stage IIA, dead, 2182 days
4286.7
TCGA-HV-A7OP-01A
0 years, male, asian, stage:Stage IIB, alive, 978 days
4279.4
TCGA-IB-7889-01A
0 years, female, white, stage:Stage IIB, dead, 481 days
4206.0
TCGA-FB-AAPZ-01A
0 years, male, white, stage:Stage IIB, alive, 716 days
3932.1
TCGA-IB-7887-01A
0 years, female, white, stage:Stage IIB, dead, 110 days
3890.7
TCGA-2J-AABI-01A
0 years, female, white, stage:Stage IIA, alive, 969 days
3868.6
TCGA-FB-AAQ3-01A
0 years, female, white, stage:Stage IIB, dead, 31 days
3824.6
TCGA-IB-A7LX-01A
0 years, male, white, stage:Stage IIB, dead, 250 days
3791.8
TCGA-FB-AAQ6-01A
0 years, male, white, stage:Stage IA, dead, 244 days
3724.5
TCGA-FB-AAQ2-01A
0 years, female, white, stage:Stage IIB, dead, 153 days
3645.7
TCGA-HZ-8001-01A
0 years, male, white, stage:Stage III, alive, 706 days
3634.6
TCGA-IB-AAUR-01A
0 years, male, white, stage:Stage IIB, alive, 338 days
3587.2
TCGA-HZ-A8P1-01A
0 years, male, white, stage:Stage IB, alive, 7 days
3482.0
TCGA-FB-AAQ0-01A
0 years, male, white, stage:Stage IIA, dead, 473 days
3457.4
TCGA-IB-7893-01A
0 years, male, white, stage:Stage IIA, dead, 117 days
3439.1
TCGA-Q3-A5QY-01A
0 years, male, white, stage:Stage IIB, alive, 416 days
3375.2
TCGA-YY-A8LH-01A
0 years, female, white, stage:Stage IIB, alive, 2016 days
3372.1
TCGA-2L-AAQA-01A
0 years, male, white, stage:Stage IIB, dead, 143 days
3295.5
TCGA-RL-AAAS-01A
0 years, female, white, stage:Stage IB, alive, 9 days
3263.9
TCGA-2J-AABE-01A
0 years, male, white, stage:Stage IIA, alive, 676 days
3203.4
TCGA-S4-A8RO-01A
0 years, female, white, stage:Stage IIB, alive, 525 days
3201.9
TCGA-2L-AAQE-01A
0 years, male, white, stage:Stage IIB, dead, 684 days
3200.6
TCGA-XN-A8T5-01A
0 years, female, white, stage:Stage IB, alive, 720 days
3180.3
TCGA-2J-AAB8-01A
0 years, male, white, stage:Stage IIB, alive, 80 days
3122.6
TCGA-S4-A8RM-01A
0 years, male, white, stage:Stage IIB, alive, 737 days
3120.6
TCGA-3A-A9IJ-01A
0 years, male, white, stage:Stage IB, alive, 1854 days
3096.7
TCGA-2J-AABK-01A
0 years, male, white, stage:Stage IIB, alive, 484 days
3090.5
TCGA-F2-6879-01A
0 years, male, white, stage:Stage IIB, dead, 334 days
3058.7
TCGA-OE-A75W-01A
0 years, male, white, stage:Stage IIA, dead, 267 days
3046.5
TCGA-HZ-8002-01A
0 years, male, white, stage:Stage IIB, dead, 366 days
3044.6
TCGA-IB-AAUP-01A
0 years, male, white, stage:Stage IIB, alive, 431 days
3019.0
TCGA-XD-AAUI-01A
0 years, female, white, stage:Stage IIB, dead, 366 days
3009.5
TCGA-IB-AAUV-01A
0 years, male, white, stage:Stage IIB, alive, 404 days
3003.8
TCGA-IB-7888-01A
0 years, female, black or african american, stage:Stage IIA, dead, 1332 days
2998.3
TCGA-HZ-7920-01A
0 years, male, white, stage:Stage IB, dead, 236 days
2969.3
TCGA-IB-8127-01A
0 years, male, white, stage:Stage IIB, alive, 522 days
2960.1
TCGA-F2-A8YN-01A
0 years, male, white, stage:Stage IIA, alive, 517 days
2912.1
TCGA-3A-A9IZ-01A
0 years, male, white, stage:Stage IIB, dead, 308 days
2889.9
TCGA-IB-A6UF-01A
0 years, male, white, stage:Stage IIB, alive, 666 days
2870.3
TCGA-US-A77J-01A
0 years, female, white, stage:Stage IIB, dead, 568 days
2856.7
TCGA-HZ-7925-01A
0 years, male, white, stage:Stage IIB, dead, 614 days
2841.2
TCGA-FB-A5VM-01A
0 years, male, white, stage:Stage IB, dead, 498 days
2832.3
TCGA-2J-AAB1-01A
0 years, male, white, stage:Stage IIB, dead, 66 days
2812.7
TCGA-H6-8124-01A
0 years, female, white, stage:Stage IIB, alive, 392 days
2811.4
TCGA-XD-AAUH-01A
0 years, female, white, stage:Stage IIB, alive, 395 days
2809.1
TCGA-3A-A9J0-01A
0 years, male, white, stage:Stage IIB, alive, 743 days
2772.6
TCGA-IB-AAUO-01A
0 years, female, white, stage:Stage IIB, dead, 239 days
2770.2
TCGA-IB-A5SP-01A
0 years, male, white, stage:Stage IIA, alive, 482 days
2769.5
TCGA-HZ-7919-01A
0 years, female, white, stage:Stage IIB, dead, 593 days
2765.9
TCGA-LB-A8F3-01A
0 years, female, black or african american, stage:Stage IIA, alive, 379 days
2754.0
TCGA-S4-A8RP-01A
0 years, female, white, stage:Stage IIB, dead, 702 days
2746.3
TCGA-2L-AAQL-01A
0 years, male, white, stage:Stage IIB, dead, 292 days
2726.2
TCGA-3A-A9IC-01A
0 years, female, white, stage:Stage IIB, dead, 738 days
2692.0
TCGA-Q3-AA2A-01A
0 years, female, white, stage:Stage IB, alive, 95 days
2671.4
TCGA-XD-AAUG-01A
0 years, female, white, stage:Stage IV, alive, 420 days
2667.4
TCGA-FB-A78T-01A
0 years, female, white, stage:Stage IIB, dead, 375 days
2623.5
TCGA-F2-A44G-01A
0 years, female, white, stage:Stage IIB, dead, 233 days
2621.6
TCGA-HZ-7926-01A
0 years, male, black or african american, stage:Stage IIB, dead, 518 days
2604.8
TCGA-HZ-8005-01A
0 years, male, white, stage:Stage IIB, dead, 120 days
2599.4
TCGA-XN-A8T3-01A
0 years, male, white, stage:Stage IB, alive, 951 days
2595.0
TCGA-IB-7890-01A
0 years, male, stage:Stage IB, dead, 598 days
2588.3
TCGA-FB-A545-01A
0 years, female, white, stage:Stage IIB, dead, 732 days
2587.3
TCGA-3A-A9I5-01A
0 years, male, white, stage:'--, alive, 1794 days
2585.9
TCGA-IB-7897-01A
0 years, female, white, stage:Stage IIB, dead, 486 days
2582.0
TCGA-3A-A9IR-01A
0 years, female, white, stage:Stage IB, alive, 1542 days
2577.5
TCGA-2J-AABU-01A
0 years, male, white, stage:Stage IIB, dead, 277 days
2565.6
TCGA-FB-AAPP-01A
0 years, male, white, stage:Stage IIB, dead, 485 days
2563.5
TCGA-HZ-7289-01A
0 years, male, white, stage:Stage IIB, dead, 661 days
2553.2
TCGA-HZ-8636-01A
0 years, female, white, stage:Stage IV, dead, 545 days
2535.6
TCGA-IB-A5SS-01A
0 years, female, white, stage:Stage IIB, dead, 460 days
2529.5
TCGA-2J-AABT-01A
0 years, female, white, stage:Stage IIB, alive, 319 days
2516.4
TCGA-YB-A89D-01A
0 years, male, white, stage:Stage IIB, alive, 350 days
2513.3
TCGA-L1-A7W4-01A
0 years, female, white, stage:Stage IIB, dead, 278 days
2500.8
TCGA-2J-AAB9-01A
0 years, female, white, stage:Stage IIB, dead, 627 days
2495.5
TCGA-HV-A7OL-01A
0 years, male, asian, stage:Stage IIA, alive, 252 days
2490.0
TCGA-US-A779-01A
0 years, female, white, stage:Stage IIB, dead, 511 days
2488.1
TCGA-HZ-A77P-01A
0 years, male, white, stage:Stage IIB, alive, 330 days
2483.8
TCGA-2J-AABO-01A
0 years, male, white, stage:Stage IIB, alive, 440 days
2482.0
TCGA-2L-AAQI-01A
0 years, male, white, stage:Stage IIB, dead, 103 days
2477.6
TCGA-3A-A9IX-01A
0 years, male, white, stage:Stage IA, alive, 1037 days
2474.6
TCGA-IB-7646-01A
0 years, male, white, stage:Stage IIB, dead, 145 days
2469.2
TCGA-2J-AABP-01A
0 years, female, white, stage:Stage IIB, alive, 463 days
2456.6
TCGA-IB-AAUQ-01A
0 years, male, white, stage:Stage IIB, dead, 183 days
2455.3
TCGA-IB-AAUW-01A
0 years, female, white, stage:Stage IIB, dead, 230 days
2448.9
TCGA-3A-A9IB-01A
0 years, female, white, stage:Stage IIB, dead, 224 days
2447.3
TCGA-3E-AAAY-01A
0 years, male, white, stage:Stage IIB, alive, 2285 days
2440.6
TCGA-2J-AABA-01A
0 years, male, white, stage:Stage IIB, dead, 607 days
2437.8
TCGA-RB-AA9M-01A
0 years, male, white, stage:Stage IIB, alive, 286 days
2437.6
TCGA-HZ-7922-01A
0 years, female, white, stage:Stage IIB, alive, 4 days
2429.3
TCGA-IB-7645-01A
0 years, female, stage:Stage IIB, dead, 1502 days
2421.3
TCGA-HV-A5A3-01A
0 years, male, asian, stage:Stage IIA, dead, 128 days
2410.1
TCGA-IB-AAUU-01A
0 years, male, white, stage:Stage IIB, alive, 245 days
2390.7
TCGA-IB-7649-01A
0 years, female, stage:Stage IIB, dead, 467 days
2386.4
TCGA-FB-AAPS-01A
0 years, female, white, stage:Stage IIB, alive, 228 days
2373.2
TCGA-IB-A6UG-01A
0 years, male, white, stage:Stage IIB, dead, 41 days
2369.2
TCGA-IB-A5ST-01A
0 years, female, white, stage:Stage IIB, alive, 635 days
2366.5
TCGA-2J-AABH-01A
0 years, male, white, stage:Stage IIA, alive, 1287 days
2345.8
TCGA-FB-AAPQ-01A
0 years, male, white, stage:Stage IIB, dead, 1130 days
2320.9
TCGA-2J-AAB6-01A
0 years, male, white, stage:Stage IIA, dead, 293 days
2303.8
TCGA-IB-7654-01A
0 years, male, white, stage:Stage IIB, dead, 476 days
2293.8
TCGA-HZ-A49H-01A
0 years, female, white, stage:Stage IIB, alive, 491 days
2289.0
TCGA-HV-A5A4-01A
0 years, female, asian, stage:Stage IIA, alive, 232 days
2276.2
TCGA-FB-AAPY-01A
0 years, male, white, stage:Stage IIB, dead, 1059 days
2272.0
TCGA-HZ-A77Q-01A
0 years, female, white, stage:Stage IIB, alive, 33 days
2266.4
TCGA-3A-A9IO-01A
0 years, male, white, stage:'--, alive, 1942 days
2263.9
TCGA-2J-AABR-01A
0 years, female, white, stage:Stage IIA, alive, 438 days
2256.0
TCGA-HZ-8519-01A
0 years, male, white, stage:Stage IA, alive, 454 days
2248.7
TCGA-3A-A9IU-01A
0 years, male, white, stage:Stage IIB, dead, 458 days
2244.7
TCGA-YH-A8SY-01A
0 years, female, white, stage:'--, alive, 388 days
2243.4
TCGA-F2-A7TX-01A
0 years, male, white, stage:Stage IIB, dead, 95 days
2243.4
TCGA-IB-AAUS-01A
0 years, female, white, stage:Stage IIB, alive, 225 days
2241.2
TCGA-F2-7276-01A
0 years, male, white, stage:Stage IIB, dead, 216 days
2228.1
TCGA-HZ-8315-01A
0 years, female, white, stage:Stage IIA, dead, 299 days
2202.6
TCGA-H6-A45N-01A
0 years, female, white, stage:Stage IIB, dead, 397 days
2185.5
TCGA-IB-7891-01A
0 years, female, white, stage:Stage IIB, dead, 913 days
2174.2
TCGA-HZ-A49I-01A
0 years, male, white, stage:Stage IIB, dead, 308 days
2156.4
TCGA-2J-AAB4-01A
0 years, male, white, stage:Stage IIB, alive, 729 days
2156.2
TCGA-IB-A5SQ-01A
0 years, female, white, stage:Stage IB, dead, 219 days
2135.7
TCGA-H8-A6C1-01A
0 years, male, white, stage:Stage IIA, alive, 671 days
2127.4
TCGA-FB-AAQ1-01A
0 years, male, white, stage:Stage IIB, dead, 123 days
2125.6
TCGA-PZ-A5RE-01A
0 years, female, white, stage:Stage IIB, dead, 470 days
2116.4
TCGA-IB-7885-01A
0 years, female, white, stage:Stage IIB, alive, 1257 days
2113.4
TCGA-3A-A9IN-01A
0 years, female, white, stage:Stage IB, alive, 2084 days
2096.8
TCGA-HZ-A4BH-01A
0 years, male, white, stage:Stage IIB, alive, 194 days
2089.2
TCGA-XD-AAUL-01A
0 years, male, white, stage:Stage IIA, alive, 498 days
2081.3
TCGA-FB-A7DR-01A
0 years, male, asian, stage:Stage IIA, dead, 353 days
2067.6
TCGA-3A-A9IL-01A
0 years, female, white, stage:Stage I, alive, 2741 days
2059.0
TCGA-F2-7273-01A
0 years, male, black or african american, stage:Stage IIB, dead, 592 days
2055.9
TCGA-IB-AAUT-01A
0 years, male, white, stage:Stage IIB, alive, 287 days
2045.6
TCGA-HZ-7923-01A
0 years, male, white, stage:Stage IIA, alive, 314 days
2042.1
TCGA-3A-A9IH-01A
0 years, female, white, stage:Stage IA, alive, 1021 days
2030.9
TCGA-IB-A5SO-01A
0 years, male, white, stage:Stage IIB, dead, 365 days
2028.2
TCGA-US-A774-01A
0 years, female, white, stage:Stage IIB, dead, 695 days
2024.2
TCGA-HZ-A4BK-01A
0 years, male, white, stage:Stage IIB, alive, 657 days
2011.6
TCGA-US-A776-01A
0 years, male, white, stage:Stage IIA, alive, 1216 days
2009.7
TCGA-FB-A4P5-01A
0 years, female, white, stage:Stage IIB, dead, 179 days
2006.7
TCGA-3A-A9I7-01A
0 years, male, black or african american, stage:Stage IIB, alive, 1323 days
2000.5
TCGA-US-A77G-01A
0 years, male, white, stage:Stage IIB, dead, 12 days
1999.1
TCGA-HV-AA8V-01A
0 years, male, asian, stage:Stage IIB, alive, 920 days
1978.5
TCGA-IB-7652-01A
0 years, female, asian, stage:Stage IIB, alive, 1116 days
1966.5
TCGA-HZ-A49G-01A
0 years, female, white, stage:Stage IIB, alive, 660 days
1940.1
TCGA-FB-A4P6-01A
0 years, male, white, stage:Stage IIB, alive, 767 days
1937.7
TCGA-HZ-A77O-01A
0 years, female, white, stage:Stage IIB, dead, 160 days
1922.7
TCGA-IB-7651-01A
0 years, female, white, stage:Stage IIB, dead, 603 days
1921.4
TCGA-2L-AAQJ-01A
0 years, female, white, stage:Stage III, dead, 394 days
1919.1
TCGA-HZ-7924-01A
0 years, female, white, stage:Stage IIA, alive, 840 days
1915.1
TCGA-2J-AABF-01A
0 years, male, white, stage:Stage IIB, dead, 691 days
1878.3
TCGA-HZ-7918-01A
0 years, male, white, stage:Stage IIB, alive, 969 days
1855.7
TCGA-F2-A44H-01A
0 years, male, white, stage:Stage IIA, alive, 586 days
1811.1
TCGA-RB-A7B8-01A
0 years, female, white, stage:Stage IIB, dead, 466 days
1789.8
TCGA-HZ-8638-01A
0 years, female, white, stage:Stage IA, dead, 151 days
1776.6
TCGA-3A-A9IV-01A
0 years, female, white, stage:Stage IB, alive, 1103 days
1758.1
TCGA-US-A77E-01A
0 years, male, white, stage:Stage IIB, dead, 430 days
1740.5
TCGA-HZ-8637-01A
0 years, female, white, stage:Stage IIB, dead, 517 days
1737.5
TCGA-2J-AABV-01A
0 years, male, white, stage:Stage IIB, dead, 652 days
1710.2
TCGA-HV-AA8X-01A
0 years, female, asian, stage:Stage IIB, dead, 532 days
1701.9
TCGA-IB-AAUM-01A
0 years, male, white, stage:Stage IIB, alive, 8 days
1674.1
TCGA-HV-A5A5-01A
0 years, female, asian, stage:Stage IIB, alive, 289 days
1625.4
TCGA-2L-AAQM-01A
0 years, male, white, stage:Stage IIB, alive, 1383 days
1622.9
TCGA-LB-A7SX-01A
0 years, female, black or african american, stage:Stage IIB, dead, 393 days
1578.6
TCGA-HV-A5A6-01A
0 years, female, asian, stage:Stage IIB, dead, 2036 days
1560.3
TCGA-IB-AAUN-01A
0 years, female, white, stage:Stage IB, dead, 144 days
1546.0
TCGA-M8-A5N4-01A
0 years, female, stage:Stage IIA, alive, 584 days
1529.3
TCGA-HZ-8317-01A
0 years, female, white, stage:Stage IIB, dead, 378 days
1523.7
TCGA-3A-A9I9-01A
0 years, male, white, stage:Stage IIA, dead, 634 days
1518.6
TCGA-FB-AAPU-01A
0 years, female, asian, stage:Stage IIA, dead, 381 days
1515.5
TCGA-LB-A9Q5-01A
0 years, female, white, stage:Stage IIB, dead, 313 days
1374.8
TCGA-3A-A9IS-01A
0 years, male, white, stage:Stage IB, alive, 998 days
1342.5
TCGA-IB-8126-01A
0 years, female, white, stage:Stage III, alive, 462 days
1267.0
TCGA-F2-6880-01A
0 years, male, white, stage:Stage IIB, alive, 295 days
972.3
TCGA-HZ-8003-01A
0 years, female, white, stage:Stage IIB, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPL31 is not prognostic in Pancreatic Adenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
538.0
Number of samples
80
Samples
Sample
Description
TPM
DO34961
0 years, male, NA, stage:, dead, 632 days
2440.3
DO34785
0 years, female, NA, stage:, alive, 721 days
989.2
DO33400
0 years, female, NA, stage:, alive, 1043 days
920.5
DO49079
0 years, male, NA, stage:, dead, 332 days
896.6
DO34817
0 years, female, NA, stage:, alive, 540 days
862.9
DO33368
0 years, male, NA, stage:, dead, 98 days
808.5
DO34264
0 years, female, NA, stage:, dead, 1144 days
790.4
DO33488
0 years, male, NA, stage:, alive, 844 days
776.5
DO33512
female, NA, stage:, dead, 499 days
743.2
DO34680
0 years, male, NA, stage:, dead, 99 days
731.2
DO49127
0 years, female, NA, stage:, alive, 392 days
715.1
DO33552
0 years, female, NA, stage:, alive, 873 days
714.7
DO34801
0 years, male, NA, stage:, alive, 626 days
705.8
DO49164
0 years, male, NA, stage:, alive, 272 days
680.1
DO49080
0 years, male, NA, stage:, alive, 83 days
667.8
DO34640
0 years, female, NA, stage:, dead, 287 days
652.1
DO34809
0 years, female, NA, stage:, dead, 297 days
650.0
DO49129
0 years, male, NA, stage:, alive, 337 days
645.3
DO33984
0 years, male, NA, stage:, alive, 847 days
640.6
DO32875
0 years, male, NA, stage:, dead, 348 days
637.8
DO49204
0 years, male, NA, stage:, dead, 156 days
637.6
DO34696
0 years, male, NA, stage:, alive, 689 days
631.0
DO32863
0 years, male, NA, stage:, dead, 715 days
620.5
DO34736
0 years, female, NA, stage:, dead, 203 days
618.3
DO34905
0 years, male, NA, stage:, alive, 1142 days
617.9
DO34240
0 years, male, NA, stage:, dead, 236 days
614.0
DO49137
0 years, female, NA, stage:, alive, 232 days
596.0
DO33480
0 years, male, NA, stage:, alive, 1054 days
594.4
DO49133
0 years, female, NA, stage:, alive, 188 days
585.1
DO49130
0 years, female, NA, stage:, alive, 351 days
572.6
DO34608
0 years, female, NA, stage:, dead, 709 days
571.8
DO49076
0 years, male, NA, stage:, dead, 480 days
571.6
DO49113
0 years, female, NA, stage:, alive, 413 days
565.2
DO49178
0 years, male, NA, stage:, dead, 27 days
543.1
DO49078
0 years, male, NA, stage:, dead, 465 days
539.6
DO32860
0 years, male, NA, stage:, dead, 1259 days
538.6
DO32878
0 years, female, NA, stage:, dead, 260 days
535.4
DO34616
0 years, female, NA, stage:, alive, 666 days
526.3
DO49193
0 years, male, NA, stage:, dead, 1 days
525.6
DO34448
0 years, female, NA, stage:, dead, 719 days
517.1
DO34849
0 years, female, NA, stage:, dead, 272 days
509.8
DO34793
0 years, male, NA, stage:, dead, 427 days
499.4
DO34288
0 years, female, NA, stage:, dead, 220 days
498.9
DO33336
0 years, female, NA, stage:, dead, 451 days
496.5
DO34720
0 years, male, NA, stage:, alive, 555 days
495.3
DO33128
0 years, male, NA, stage:, dead, 423 days
490.5
DO49170
0 years, male, NA, stage:, alive, 197 days
488.4
DO33392
0 years, male, NA, stage:, alive, 1014 days
483.6
DO49168
0 years, male, NA, stage:, alive, 149 days
477.8
DO34728
0 years, female, NA, stage:, alive, 508 days
475.4
DO33168
0 years, female, NA, stage:, dead, 8 days
455.9
DO49183
0 years, female, NA, stage:, dead, 429 days
446.6
DO34368
0 years, female, NA, stage:, dead, 537 days
446.1
DO49138
0 years, male, NA, stage:, dead, 230 days
444.9
DO49135
0 years, male, NA, stage:, alive, 270 days
439.4
DO49185
0 years, male, NA, stage:, alive, 179 days
434.2
DO49090
0 years, female, NA, stage:, dead, 152 days
429.0
DO32900
0 years, male, NA, stage:, dead, 768 days
424.6
DO34312
0 years, female, NA, stage:, dead, 226 days
410.3
DO49166
0 years, female, NA, stage:, alive, 222 days
402.2
DO34600
0 years, male, NA, stage:, dead, 537 days
393.6
DO33408
0 years, female, NA, stage:, alive, 909 days
381.3
DO34504
0 years, male, NA, stage:, dead, 257 days
379.2
DO34432
0 years, female, NA, stage:, dead, 400 days
375.7
DO33344
0 years, male, NA, stage:, dead, 361 days
370.2
DO33376
0 years, female, NA, stage:, alive, 909 days
369.4
DO33472
0 years, female, NA, stage:, dead, 388 days
363.0
DO49087
0 years, female, NA, stage:, dead, 260 days
362.6
DO34656
0 years, female, NA, stage:, alive, 834 days
356.6
DO33544
0 years, female, NA, stage:, dead, 412 days
356.3
DO32829
0 years, female, NA, stage:T2N0MX, dead, 1874 days
351.7
DO49181
0 years, male, NA, stage:, dead, 1534 days
335.6
DO33600
0 years, female, NA, stage:, alive, 854 days
303.5
DO49172
0 years, female, NA, stage:, dead, 1021 days
191.5
DO49074
0 years, male, NA, stage:, dead, 168 days
163.9
DO49199
0 years, male, NA, stage:, dead, 1095 days
150.4
DO49198
0 years, female, NA, stage:, dead, 251 days
141.3
DO49184
0 years, male, NA, stage:, dead, 455 days
116.0
DO49175
0 years, male, NA, stage:, dead, 414 days
101.0
DO34336
0 years, female, NA, stage:, alive, 743 days
44.2
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PANCREATIC DUCTAL ADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
235
Samples
Sample ID
Sample type
nRPX
CPT0183770004
Normal
1.4
CPT0238740004
Normal
1.4
CPT0238940004
Normal
1.3
CPT0208710004
Normal
1.2
CPT0238640004
Normal
1.2
CPT0347820002
Normal
1.2
CPT0198930003
Normal
1.0
CPT0170260004
Normal
1.0
CPT0237920004
Normal
1.0
CPT0236800004
Normal
1.0
CPT0218220004
Normal
1.0
CPT0347880002
Normal
1.0
CPT0209650004
Normal
1.0
CPT0208850004
Normal
0.9
CPT0025760003
Normal
0.9
CPT0239920004
Normal
0.9
C3N-00709-06
Normal
0.9
CPT0236710004
Normal
0.9
CPT0187540004
Normal
0.9
CPT0162780004
Normal
0.8
C3N-02573-03
Normal
0.8
CPT0091680003
Normal
0.8
C3L-00189-04
Normal
0.8
CPT0011540003
Normal
0.8
CPT0236360004
Normal
0.8
CPT0166780004
Normal
0.8
C3L-03632-04
Normal
0.8
CPT0089750004
Normal
0.8
CPT0237850004
Normal
0.8
CPT0078180003
Normal
0.7
CPT0347760002
Normal
0.7
CPT0347850002
Normal
0.7
CPT0239140004
Normal
0.7
CPT0248440003
Normal
0.7
CPT0276030003
Normal
0.6
CPT0355190003
Normal
0.6
CPT0063580003
Normal
0.6
CPT0077950003
Normal
0.5
CPT0127290003
Normal
0.5
CPT0123770003
Normal
0.5
CPT0246950003
Normal
0.5
CPT0246220004
Normal
0.5
CPT0198440004
Normal
0.5
CPT0355200003
Normal
0.3
CPT0247000003
Normal
0.3
CPT0170240004
Tumor
0.3
CPT0077810003
Normal
0.3
CPT0017130003
Normal
0.2
CPT0123890003
Normal
0.2
CPT0347790002
Normal
0.1
CPT0247090003
Tumor
0.1
CPT0238440005
Tumor
0.1
CPT0221470005
Tumor
0.1
CPT0355180003
Normal
0.0
CPT0246210004
Tumor
0.0
CPT0093880003
Normal
0.0
CPT0236560004
Tumor
0.0
C3L-00401-04
Normal
0.0
CPT0238040005
Tumor
-0.1
CPT0093860003
Tumor
-0.1
CPT0123650003
Tumor
-0.1
WU-PDA1
Tumor
-0.1
CPT0241320005
Tumor
-0.1
CPT0125010003
Normal
-0.1
CPT0078160004
Tumor
-0.1
CPT0226530004
Tumor
-0.2
CPT0207990004
Normal
-0.2
CPT0238920004
Tumor
-0.2
CPT0108960003
Normal
-0.2
CPT0236780005
Tumor
-0.2
CPT0241510004
Normal
-0.2
CPT0246940003
Tumor
-0.2
CPT0174800003
Normal
-0.2
CPT0209640005
Tumor
-0.2
CPT0125090003
Tumor
-0.2
CPT0237270005
Tumor
-0.3
CPT0123670003
Normal
-0.3
CPT0087890004
Tumor
-0.3
CPT0226680005
Tumor
-0.3
CPT0162760003
Tumor
-0.3
CPT0183450005
Tumor
-0.3
CPT0094630004
Tumor
-0.3
CPT0124360003
Tumor
-0.3
CPT0078030003
Normal
-0.3
CPT0008800003
Tumor
-0.3
CPT0187550004
Tumor
-0.3
CPT0207980005
Tumor
-0.3
CPT0008750003
Tumor
-0.3
CPT0086210003
Normal
-0.3
CPT0064570003
Normal
-0.3
CPT0246260004
Tumor
-0.3
CPT0108400003
Tumor
-0.4
CPT0001750003
Normal
-0.4
CPT0088260004
Tumor
-0.4
CPT0123460003
Normal
-0.4
CPT0197440004
Normal
-0.4
CPT0183750005
Tumor
-0.4
CPT0239100009
Tumor
-0.4
CPT0198420004
Tumor
-0.4
CPT0203850004
Tumor
-0.4
KoreanReference2
Tumor
-0.4
CPT0127270003
Tumor
-0.4
CPT0138990003
Normal
-0.4
CPT0248620003
Normal
-0.4
CPT0226610004
Normal
-0.4
CPT0238530005
Tumor
-0.4
CPT0078090004
Tumor
-0.4
CPT0246990003
Tumor
-0.4
CPT0217700004
Tumor
-0.4
CPT0162660004
Tumor
-0.4
CPT0081260004
Tumor
-0.4
CPT0246840003
Tumor
-0.4
CPT0186040004
Tumor
-0.4
CPT0207780004
Tumor
-0.4
CPT0246810003
Tumor
-0.4
CPT0162670004
Normal
-0.5
CPT0094130004
Tumor
-0.5
CPT0185920004
Tumor
-0.5
CPT0081470004
Tumor
-0.5
CPT0123990003
Tumor
-0.5
CPT0088180004
Tumor
-0.5
CPT0226570004
Tumor
-0.5
CPT0248410004
Tumor
-0.5
CPT0019410004
Tumor
-0.5
CPT0226490004
Tumor
-0.5
CPT0246720003
Tumor
-0.5
CPT0209310004
Tumor
-0.5
CPT0264150003
Tumor
-0.5
CPT0198910005
Tumor
-0.5
CPT0063970004
Tumor
-0.5
CPT0247040003
Tumor
-0.5
CPT0208840004
Tumor
-0.5
CPT0187930005
Tumor
-0.5
CPT0276010003
Tumor
-0.5
CPT0025750003
Tumor
-0.5
CPT0124410004
Tumor
-0.5
CPT0238820005
Tumor
-0.6
CPT0094230004
Tumor
-0.6
CPT0221240004
Tumor
-0.6
CPT0078000003
Tumor
-0.6
CPT0081060004
Tumor
-0.6
CPT0000250017
Tumor
-0.6
CPT0017040004
Tumor
-0.6
CPT0109300004
Tumor
-0.6
CPT0124530003
Normal
-0.6
CPT0224460004
Tumor
-0.6
CPT0065640003
Tumor
-0.6
CPT0066020003
Normal
-0.6
CPT0109010004
Tumor
-0.6
CPT0238710004
Tumor
-0.6
CPT0126160004
Tumor
-0.6
CPT0221250004
Normal
-0.6
CPT0094180003
Tumor
-0.6
CPT0226760004
Tumor
-0.6
KoreanReference3
Tumor
-0.6
CPT0077930004
Tumor
-0.6
CPT0248590004
Tumor
-0.6
CPT0086190004
Tumor
-0.7
CPT0124980004
Tumor
-0.7
CPT0208550005
Tumor
-0.7
KoreanReference1
Tumor
-0.7
CPT0123860003
Tumor
-0.7
CPT0089720003
Tumor
-0.7
CPT0109200004
Tumor
-0.7
CPT0078250003
Tumor
-0.7
CPT0237910004
Tumor
-0.7
CPT0161770004
Tumor
-0.8
CPT0092630003
Tumor
-0.8
CPT0198700005
Tumor
-0.8
CPT0077880003
Normal
-0.8
CPT0124000003
Normal
-0.8
CPT0077790004
Tumor
-0.8
CPT0166760004
Tumor
-0.8
CPT0197420004
Tumor
-0.8
CPT0123750003
Tumor
-0.8
CPT0218200004
Tumor
-0.8
CPT0063570003
Tumor
-0.8
CPT0094940004
Tumor
-0.8
CPT0226650004
Tumor
-0.8
CPT0236340004
Tumor
-0.8
CPT0108930003
Tumor
-0.9
CPT0237840004
Tumor
-0.9
CPT0236700005
Tumor
-0.9
CPT0241500004
Tumor
-0.9
CPT0174700004
Tumor
-0.9
CPT0093980004
Tumor
-0.9
CPT0227930004
Tumor
-0.9
CPT0239910004
Tumor
-0.9
CPT0208690004
Tumor
-0.9
CPT0254680003
Tumor
-0.9
CPT0238610009
Tumor
-0.9
CPT0123440003
Tumor
-0.9
CPT0064090003
Tumor
-0.9
CPT0019300004
Tumor
-1.0
CPT0088320003
Tumor
-1.0
CPT0014040003
Tumor
-1.0
CPT0235230004
Tumor
-1.0
CPT0011520003
Tumor
-1.0
CPT0125130003
Tumor
-1.0
CPT0124610004
Tumor
-1.0
CPT0081360004
Tumor
-1.1
CPT0001730017
Tumor
-1.1
CPT0139000004
Tumor
-1.1
CPT0064110003
Normal
-1.2
CPT0077860003
Tumor
-1.3
CPT0093930004
Tumor
-1.3
CPT0091660003
Tumor
-1.3
CPT0226600004
Tumor
-1.3
CPT0094030003
Tumor
-1.4
CPT0124500004
Tumor
-1.4
CPT0094740004
Tumor
-1.4
CPT0065570003
Tumor
-1.6
CPT0083270003
Tumor
-1.8
CPT0161990005
Tumor
-1.9
CPT0064520004
Tumor
-2.0
CPT0247050003
Normal
N/A
CPT0108410003
Normal
N/A
CPT0248320003
Normal
N/A
CPT0166650006
Tumor
N/A
CPT0224470004
Normal
N/A
C3L-01687-04
Normal
N/A
CPT0138890003
Normal
N/A
CPT0109110004
Tumor
N/A
WU-pooled sample
Tumor
N/A
CPT0014060003
Normal
N/A
CPT0109130003
Normal
N/A
CPT0138900004
Tumor
N/A
CPT0166680004
Normal
N/A
CPT0094760003
Normal
N/A
CPT0186050004
Normal
N/A
CPT0237290004
Normal
N/A
CPT0264180003
Normal
N/A
CPT0063990003
Normal
N/A
CPT0126200003
Normal
N/A
CPT0198730004
Normal
N/A
Show allShow less
PANCREATIC CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
