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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
JMJD6 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
66.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
36.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
35.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
31.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
JMJD6 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.6
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
46.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
43.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
38.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.7
123
Tumor
1.7
957
Tumor
1.7
1013
Tumor
1.6
435
Tumor
1.5
491
Tumor
1.3
567
Tumor
1.2
411
Tumor
1.1
257
Tumor
1.1
965
Tumor
1.0
355
Tumor
0.9
573
Tumor
0.9
375
Tumor
0.9
953
Tumor
0.9
697
Tumor
0.9
125
Tumor
0.9
525
Tumor
0.9
537
Tumor
0.9
313
Tumor
0.9
951
Tumor
0.8
497
Tumor
0.8
923
Tumor
0.8
983
Tumor
0.7
423
Tumor
0.7
663
Tumor
0.7
571
Tumor
0.7
393
Tumor
0.7
361
Tumor
0.7
367
Tumor
0.7
231
Tumor
0.7
285
Tumor
0.7
427
Tumor
0.6
535
Tumor
0.6
741
Tumor
0.6
391
Tumor
0.6
473
Tumor
0.6
724
Normal
0.6
161
Tumor
0.6
745
Tumor
0.6
413
Tumor
0.6
147
Tumor
0.6
395
Tumor
0.6
213
Tumor
0.6
112
Tumor
0.6
981
Tumor
0.6
865
Tumor
0.6
383
Tumor
0.5
477
Tumor
0.5
331
Tumor
0.5
277
Tumor
0.5
283
Tumor
0.5
127
Tumor
0.5
661
Tumor
0.5
187
Tumor
0.5
357
Tumor
0.4
877
Tumor
0.4
937
Tumor
0.4
665
Tumor
0.4
471
Tumor
0.4
465
Tumor
0.4
271
Tumor
0.4
695
Tumor
0.4
685
Tumor
0.4
145
Tumor
0.4
925
Tumor
0.4
447
Tumor
0.4
977
Tumor
0.4
443
Tumor
0.4
671
Tumor
0.4
211
Tumor
0.4
635
Tumor
0.3
483
Tumor
0.3
815
Tumor
0.3
191
Tumor
0.3
351
Tumor
0.3
1031
Tumor
0.3
385
Tumor
0.3
1021
Tumor
0.3
433
Tumor
0.3
647
Tumor
0.3
557
Tumor
0.3
861
Tumor
0.3
297
Tumor
0.3
527
Tumor
0.3
851
Tumor
0.3
113
Tumor
0.3
487
Tumor
0.3
883
Tumor
0.2
131
Tumor
0.2
517
Tumor
0.2
545
Tumor
0.2
715
Tumor
0.2
343
Tumor
0.2
431
Tumor
0.2
227
Tumor
0.2
185
Tumor
0.2
341
Tumor
0.2
743
Tumor
0.1
873
Tumor
0.1
387
Tumor
0.1
217
Tumor
0.1
813
Tumor
0.1
267
Tumor
0.1
727
Tumor
0.1
171
Tumor
0.1
493
Tumor
0.1
425
Tumor
0.1
445
Tumor
0.1
1025
Tumor
0.0
463
Tumor
0.0
311
Tumor
0.0
135
Tumor
0.0
967
Tumor
0.0
467
Tumor
0.0
641
Tumor
0.0
1015
Tumor
0.0
141
Tumor
0.0
867
Tumor
0.0
817
Tumor
0.0
553
Tumor
-0.1
363
Tumor
-0.1
221
Tumor
-0.1
451
Tumor
-0.1
1041
Tumor
-0.1
814
Normal
-0.1
713
Tumor
-0.1
384
Normal
-0.1
421
Tumor
-0.1
368
Normal
-0.1
376
Normal
-0.1
415
Tumor
-0.1
366
Normal
-0.1
672
Normal
-0.1
975
Tumor
-0.1
365
Tumor
-0.2
881
Tumor
-0.2
857
Tumor
-0.2
513
Tumor
-0.2
563
Tumor
-0.2
666
Normal
-0.2
192
Normal
-0.2
823
Tumor
-0.2
195
Tumor
-0.2
455
Tumor
-0.3
223
Tumor
-0.3
344
Normal
-0.3
921
Tumor
-0.3
1027
Tumor
-0.3
664
Normal
-0.3
396
Normal
-0.3
362
Normal
-0.3
111
Normal
-0.3
137
Tumor
-0.3
943
Tumor
-0.3
648
Normal
-0.3
353
Tumor
-0.3
342
Normal
-0.3
662
Normal
-0.3
536
Normal
-0.3
352
Normal
-0.3
114
Normal
-0.3
394
Normal
-0.3
124
Normal
-0.3
258
Normal
-0.3
386
Normal
-0.3
354
Normal
-0.3
1014
Normal
-0.3
523
Tumor
-0.3
917
Tumor
-0.4
913
Tumor
-0.4
737
Tumor
-0.4
224
Normal
-0.4
966
Normal
-0.4
1043
Tumor
-0.4
755
Tumor
-0.4
915
Tumor
-0.4
858
Normal
-0.4
968
Normal
-0.4
128
Normal
-0.4
721
Tumor
-0.4
534
Normal
-0.4
126
Normal
-0.4
461
Tumor
-0.4
358
Normal
-0.4
388
Normal
-0.4
466
Normal
-0.4
976
Normal
-0.4
498
Normal
-0.4
261
Tumor
-0.4
314
Normal
-0.4
978
Normal
-0.5
332
Normal
-0.5
818
Normal
-0.5
1045
Tumor
-0.5
564
Normal
-0.5
958
Normal
-0.5
492
Normal
-0.5
222
Normal
-0.5
392
Normal
-0.5
777
Tumor
-0.5
984
Normal
-0.5
434
Normal
-0.5
232
Normal
-0.5
278
Normal
-0.5
228
Normal
-0.5
911
Tumor
-0.5
428
Normal
-0.5
515
Tumor
-0.5
162
Normal
-0.5
952
Normal
-0.5
944
Normal
-0.5
444
Normal
-0.5
298
Normal
-0.6
494
Normal
-0.6
312
Normal
-0.6
574
Normal
-0.6
954
Normal
-0.6
538
Normal
-0.6
488
Normal
-0.6
186
Normal
-0.6
1028
Normal
-0.6
414
Normal
-0.6
364
Normal
-0.6
484
Normal
-0.6
286
Normal
-0.6
744
Normal
-0.6
722
Normal
-0.6
863
Tumor
-0.6
956
Normal
-0.6
218
Normal
-0.6
196
Normal
-0.6
568
Normal
-0.6
478
Normal
-0.6
546
Normal
-0.6
554
Normal
-0.6
964
Normal
-0.6
142
Normal
-0.6
514
Normal
-0.6
955
Tumor
-0.6
284
Normal
-0.6
742
Normal
-0.6
615
Tumor
-0.6
214
Normal
-0.6
268
Normal
-0.6
172
Normal
-0.6
146
Normal
-0.6
524
Normal
-0.6
327
Tumor
-0.7
464
Normal
-0.7
516
Normal
-0.7
916
Normal
-0.7
138
Normal
-0.7
526
Normal
-0.7
716
Normal
-0.7
1042
Normal
-0.7
272
Normal
-0.7
816
Normal
-0.7
1032
Normal
-0.7
824
Normal
-0.7
1044
Normal
-0.7
1026
Normal
-0.7
785
Tumor
-0.7
738
Normal
-0.7
262
Normal
-0.7
456
Normal
-0.7
852
Normal
-0.7
188
Normal
-0.7
686
Normal
-0.7
878
Normal
-0.7
982
Normal
-0.7
912
Normal
-0.7
1016
Normal
-0.7
446
Normal
-0.7
426
Normal
-0.7
558
Normal
-0.7
756
Normal
-0.7
778
Normal
-0.7
714
Normal
-0.7
412
Normal
-0.7
136
Normal
-0.7
468
Normal
-0.7
938
Normal
-0.8
723
Tumor
-0.8
628
Normal
-0.8
572
Normal
-0.8
212
Normal
-0.8
963
Tumor
-0.8
1022
Normal
-0.8
148
Normal
-0.8
786
Normal
-0.8
698
Normal
-0.8
436
Normal
-0.8
356
Normal
-0.8
864
Normal
-0.8
868
Normal
-0.8
472
Normal
-0.8
482
Normal
-0.8
882
Normal
-0.8
528
Normal
-0.8
1046
Normal
-0.8
627
Tumor
-0.8
746
Normal
-0.8
696
Normal
-0.8
481
Tumor
-0.8
424
Normal
-0.8
884
Normal
-0.8
617
Tumor
-0.8
422
Normal
-0.9
416
Normal
-0.9
862
Normal
-0.9
866
Normal
-0.9
618
Normal
-0.9
922
Normal
-0.9
616
Normal
-0.9
926
Normal
-0.9
642
Normal
-0.9
474
Normal
-0.9
924
Normal
-0.9
874
Normal
-0.9
518
Normal
-0.9
328
Normal
-0.9
452
Normal
-0.9
132
Normal
-0.9
432
Normal
-0.9
918
Normal
-1.0
914
Normal
-1.0
448
Normal
-1.0
728
Normal
-1.0
462
Normal
-1.0
636
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
