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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUCB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
404.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
301.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
279.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
258.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
257.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
234.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
205.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
200.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
197.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
182.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
179.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
170.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
156.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
152.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
150.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
149.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
146.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
138.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
136.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
133.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
131.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
131.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
129.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
129.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
129.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
125.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
123.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
119.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
114.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
113.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
111.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
111.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
110.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
109.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
105.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
104.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
103.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
103.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
101.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
99.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
97.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
97.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
97.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
96.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
95.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
94.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
93.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
93.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
91.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
90.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
90.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
89.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
88.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
87.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
87.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
87.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
86.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
86.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
86.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
85.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
82.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
82.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
82.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
82.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
81.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
80.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
79.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
79.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
79.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
79.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
79.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
79.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
77.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
77.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
77.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
76.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
76.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
76.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
76.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
75.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
74.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
74.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
72.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
72.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
72.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
71.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
70.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
70.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
70.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
69.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
69.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
68.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
68.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
67.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
67.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
66.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
66.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
65.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
65.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
64.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
64.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
63.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
63.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
63.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
63.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
63.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
62.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
62.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
62.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
61.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
61.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
61.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
61.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
60.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
59.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
59.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
59.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
58.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
58.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
57.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
57.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
57.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
57.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
57.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
56.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
56.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
56.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
56.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
56.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
55.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
54.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
54.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
54.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
54.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
53.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
53.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
53.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
53.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
52.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
51.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
51.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
51.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
51.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
50.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
50.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
50.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
50.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
50.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
50.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
50.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
49.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
49.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
48.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
48.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
48.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
48.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
48.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
48.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
47.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
47.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
46.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
46.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
46.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
46.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
46.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
46.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
45.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
45.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
45.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
45.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
45.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
45.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
45.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
44.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
44.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
44.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
44.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
44.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
43.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
43.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
42.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
42.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
41.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
41.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
41.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
41.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
40.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
40.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
40.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
40.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
39.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
39.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
39.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
39.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
38.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
38.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
38.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
38.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
37.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
37.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
36.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
35.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
35.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
35.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
35.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
34.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
34.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
34.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
33.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
32.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
32.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
32.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
32.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
30.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
30.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
29.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
29.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUCB2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.7
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
140.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
130.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
117.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
109.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
107.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
100.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
99.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
95.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
87.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
84.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
84.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
83.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
82.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
80.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
80.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
74.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
72.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
71.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
71.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
71.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
70.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
69.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
68.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
68.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
67.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
67.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
67.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
66.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
65.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
65.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
63.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
62.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
61.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
60.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
60.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
59.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
59.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
58.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
57.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
57.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
56.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
56.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
54.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
54.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
54.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
53.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
53.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
52.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
51.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
51.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
51.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
50.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
50.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
49.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
49.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
48.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
48.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
47.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
47.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
46.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
46.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
46.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
46.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
45.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
45.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
45.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
45.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
45.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
44.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
44.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
44.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
43.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
43.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
43.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
42.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
42.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
41.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
41.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
41.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
40.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
39.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
39.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
39.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
39.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
39.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
38.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
38.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
38.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
38.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
37.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
37.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
37.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
37.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
37.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
36.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
36.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
36.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
35.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
35.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
34.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
33.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
31.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
2.0
487
Tumor
1.7
171
Tumor
1.6
285
Tumor
1.4
393
Tumor
1.4
923
Tumor
1.3
523
Tumor
1.3
957
Tumor
1.3
937
Tumor
1.3
823
Tumor
1.3
665
Tumor
1.2
724
Normal
1.2
383
Tumor
1.1
865
Tumor
1.1
147
Tumor
1.1
857
Tumor
1.1
223
Tumor
1.1
983
Tumor
1.0
145
Tumor
0.9
697
Tumor
0.9
911
Tumor
0.9
647
Tumor
0.9
545
Tumor
0.9
357
Tumor
0.8
443
Tumor
0.8
617
Tumor
0.8
953
Tumor
0.8
861
Tumor
0.7
873
Tumor
0.7
445
Tumor
0.7
913
Tumor
0.7
721
Tumor
0.7
481
Tumor
0.7
467
Tumor
0.7
141
Tumor
0.7
497
Tumor
0.7
777
Tumor
0.7
533
Tumor
0.7
327
Tumor
0.7
451
Tumor
0.7
917
Tumor
0.6
415
Tumor
0.6
191
Tumor
0.6
355
Tumor
0.6
461
Tumor
0.6
187
Tumor
0.6
553
Tumor
0.5
1013
Tumor
0.5
573
Tumor
0.5
977
Tumor
0.5
535
Tumor
0.5
536
Normal
0.4
1044
Normal
0.4
493
Tumor
0.4
755
Tumor
0.4
915
Tumor
0.4
635
Tumor
0.3
1015
Tumor
0.3
283
Tumor
0.3
395
Tumor
0.3
1043
Tumor
0.3
636
Normal
0.3
123
Tumor
0.3
978
Normal
0.3
741
Tumor
0.3
137
Tumor
0.3
427
Tumor
0.3
1014
Normal
0.3
494
Normal
0.3
515
Tumor
0.3
1025
Tumor
0.2
723
Tumor
0.2
922
Normal
0.2
863
Tumor
0.2
554
Normal
0.2
113
Tumor
0.2
745
Tumor
0.2
488
Normal
0.2
286
Normal
0.2
813
Tumor
0.2
261
Tumor
0.2
353
Tumor
0.2
912
Normal
0.2
135
Tumor
0.2
1026
Normal
0.2
367
Tumor
0.2
478
Normal
0.2
743
Tumor
0.2
212
Normal
0.2
814
Normal
0.1
981
Tumor
0.1
918
Normal
0.1
943
Tumor
0.1
471
Tumor
0.1
1021
Tumor
0.1
423
Tumor
0.1
525
Tumor
0.1
963
Tumor
0.1
955
Tumor
0.1
984
Normal
0.1
975
Tumor
0.1
628
Normal
0.1
938
Normal
0.1
698
Normal
0.1
131
Tumor
0.1
862
Normal
0.1
492
Normal
0.1
411
Tumor
0.1
161
Tumor
0.1
351
Tumor
0.1
696
Normal
0.1
852
Normal
0.1
195
Tumor
0.1
568
Normal
0.1
433
Tumor
0.1
1027
Tumor
0.1
952
Normal
0.1
211
Tumor
0.1
954
Normal
0.0
778
Normal
0.0
526
Normal
0.0
257
Tumor
0.0
213
Tumor
0.0
524
Normal
0.0
1045
Tumor
0.0
925
Tumor
0.0
284
Normal
0.0
498
Normal
0.0
446
Normal
0.0
686
Normal
0.0
396
Normal
0.0
851
Tumor
0.0
958
Normal
0.0
663
Tumor
-0.1
227
Tumor
-0.1
824
Normal
-0.1
142
Normal
-0.1
482
Normal
-0.1
528
Normal
-0.1
447
Tumor
-0.1
618
Normal
-0.1
786
Normal
-0.1
924
Normal
-0.1
944
Normal
-0.1
964
Normal
-0.1
368
Normal
-0.1
685
Tumor
-0.1
1022
Normal
-0.1
785
Tumor
-0.1
966
Normal
-0.1
124
Normal
-0.1
728
Normal
-0.1
926
Normal
-0.1
574
Normal
-0.1
976
Normal
-0.1
916
Normal
-0.1
514
Normal
-0.1
313
Tumor
-0.2
881
Tumor
-0.2
343
Tumor
-0.2
572
Normal
-0.2
874
Normal
-0.2
463
Tumor
-0.2
192
Normal
-0.2
627
Tumor
-0.2
737
Tumor
-0.2
858
Normal
-0.2
148
Normal
-0.2
466
Normal
-0.2
877
Tumor
-0.2
474
Normal
-0.2
715
Tumor
-0.2
455
Tumor
-0.2
1016
Normal
-0.2
815
Tumor
-0.2
473
Tumor
-0.2
341
Tumor
-0.2
615
Tumor
-0.2
228
Normal
-0.2
672
Normal
-0.2
756
Normal
-0.3
571
Tumor
-0.3
125
Tumor
-0.3
816
Normal
-0.3
965
Tumor
-0.3
982
Normal
-0.3
214
Normal
-0.3
387
Tumor
-0.3
727
Tumor
-0.3
1031
Tumor
-0.3
128
Normal
-0.3
224
Normal
-0.3
868
Normal
-0.3
1032
Normal
-0.3
127
Tumor
-0.3
921
Tumor
-0.3
232
Normal
-0.3
431
Tumor
-0.3
967
Tumor
-0.3
416
Normal
-0.3
146
Normal
-0.3
364
Normal
-0.3
1041
Tumor
-0.3
114
Normal
-0.3
358
Normal
-0.3
384
Normal
-0.3
424
Normal
-0.3
546
Normal
-0.3
456
Normal
-0.3
666
Normal
-0.3
518
Normal
-0.3
744
Normal
-0.3
258
Normal
-0.3
434
Normal
-0.4
444
Normal
-0.4
452
Normal
-0.4
1028
Normal
-0.4
866
Normal
-0.4
564
Normal
-0.4
914
Normal
-0.4
426
Normal
-0.4
328
Normal
-0.4
111
Normal
-0.4
311
Tumor
-0.4
563
Tumor
-0.4
136
Normal
-0.4
331
Tumor
-0.4
272
Normal
-0.4
867
Tumor
-0.4
534
Normal
-0.4
695
Tumor
-0.4
716
Normal
-0.4
1042
Normal
-0.4
392
Normal
-0.4
722
Normal
-0.4
352
Normal
-0.4
662
Normal
-0.4
428
Normal
-0.4
557
Tumor
-0.4
968
Normal
-0.4
491
Tumor
-0.4
218
Normal
-0.4
188
Normal
-0.4
517
Tumor
-0.4
413
Tumor
-0.4
412
Normal
-0.4
738
Normal
-0.4
713
Tumor
-0.4
1046
Normal
-0.5
477
Tumor
-0.5
464
Normal
-0.5
363
Tumor
-0.5
277
Tumor
-0.5
217
Tumor
-0.5
448
Normal
-0.5
185
Tumor
-0.5
468
Normal
-0.5
616
Normal
-0.5
483
Tumor
-0.5
138
Normal
-0.5
818
Normal
-0.5
956
Normal
-0.5
376
Normal
-0.5
344
Normal
-0.5
297
Tumor
-0.5
342
Normal
-0.5
391
Tumor
-0.5
126
Normal
-0.5
385
Tumor
-0.5
882
Normal
-0.5
465
Tumor
-0.5
472
Normal
-0.5
394
Normal
-0.5
462
Normal
-0.6
883
Tumor
-0.6
262
Normal
-0.6
864
Normal
-0.6
231
Tumor
-0.6
267
Tumor
-0.6
538
Normal
-0.6
484
Normal
-0.6
878
Normal
-0.6
356
Normal
-0.6
435
Tumor
-0.6
268
Normal
-0.6
388
Normal
-0.6
432
Normal
-0.6
112
Tumor
-0.6
742
Normal
-0.6
172
Normal
-0.6
642
Normal
-0.6
558
Normal
-0.7
421
Tumor
-0.7
664
Normal
-0.7
361
Tumor
-0.7
746
Normal
-0.7
884
Normal
-0.7
516
Normal
-0.7
278
Normal
-0.7
365
Tumor
-0.7
332
Normal
-0.7
366
Normal
-0.7
312
Normal
-0.7
436
Normal
-0.7
817
Tumor
-0.8
354
Normal
-0.8
714
Normal
-0.8
186
Normal
-0.8
271
Tumor
-0.8
362
Normal
-0.8
196
Normal
-0.8
661
Tumor
-0.8
648
Normal
-0.8
314
Normal
-0.8
375
Tumor
-0.9
132
Normal
-0.9
422
Normal
-0.9
162
Normal
-0.9
671
Tumor
-0.9
222
Normal
-1.0
414
Normal
-1.0
221
Tumor
-1.0
513
Tumor
-1.1
951
Tumor
-1.1
537
Tumor
-1.2
298
Normal
-1.2
567
Tumor
-1.3
641
Tumor
-1.3
425
Tumor
-1.4
386
Normal
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
