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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUCKS1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
193.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
185.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
169.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
152.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
146.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
133.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
131.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
127.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
118.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
117.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
113.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
111.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
109.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
109.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
107.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
107.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
103.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
102.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
100.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
100.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
99.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
99.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
98.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
97.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
94.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
94.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
91.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
91.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
91.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
91.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
90.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
88.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
88.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
87.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
86.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
86.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
85.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
84.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
83.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
83.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
82.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
81.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
81.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
81.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
80.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
80.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
79.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
79.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
78.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
78.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
77.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
77.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
77.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
75.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
75.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
74.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
74.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
74.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
74.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
73.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
73.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
72.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
72.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
71.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
71.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
71.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
71.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
71.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
71.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
69.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
69.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
68.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
68.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
67.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
67.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
67.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
67.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
66.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
66.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
65.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
65.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
64.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
64.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
64.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
64.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
63.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
63.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
62.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
62.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
61.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
61.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
61.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
61.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
61.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
60.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
60.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
60.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
60.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
60.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
59.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
59.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
59.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
58.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
58.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
58.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
58.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
57.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
57.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
57.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
57.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
57.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
56.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
56.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
55.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
55.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
55.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
55.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
54.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
54.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
54.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
54.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
53.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
53.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
53.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
53.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
53.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
53.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
53.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
52.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
52.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
52.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
52.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
51.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
51.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
51.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
50.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
50.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
50.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
49.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
49.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
49.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
48.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
48.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
48.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
48.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
48.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
48.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
48.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
48.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
47.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
47.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
47.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
47.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
47.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
47.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
47.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
47.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
47.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
46.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
46.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
45.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
45.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
45.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
45.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
45.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
45.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
45.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
44.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
44.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
44.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
44.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
44.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
44.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
44.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
44.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
43.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
43.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
43.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
43.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
43.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
42.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
42.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
42.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
42.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
42.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
41.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
41.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
40.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
40.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
40.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
40.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
40.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
40.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
40.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
39.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
39.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
39.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
39.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
39.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
39.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
38.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
38.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
38.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
38.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
37.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
37.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
37.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
37.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
36.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
36.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
36.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
36.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
35.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
35.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
35.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
35.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
35.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
35.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
34.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
34.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
34.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
34.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
33.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
33.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
31.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
31.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
30.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
30.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
28.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
27.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
25.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
25.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUCKS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.4
Number of samples
231
Samples
Sample
Description
TPM
DO45187
0 years, female, NA, stage:1, alive, 1260 days
116.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
114.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
110.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
109.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
108.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
107.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
101.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
101.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
99.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
96.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
91.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
90.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
89.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
89.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
89.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
89.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
88.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
85.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
85.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
84.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
83.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
83.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
83.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
82.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
82.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
82.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
81.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
81.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
80.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
80.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
79.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
78.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
78.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
78.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
76.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
75.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
75.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
75.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
74.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
74.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
74.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
74.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
73.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
73.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
73.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
72.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
71.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
71.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
69.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
69.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
68.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
68.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
67.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
67.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
67.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
67.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
67.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
67.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
66.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
66.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
66.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
65.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
65.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
63.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
63.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
62.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
62.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
61.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
61.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
61.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
60.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
60.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
60.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
59.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
59.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
59.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
58.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
58.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
58.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
58.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
57.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
57.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
57.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
57.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
57.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
56.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
56.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
55.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
54.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
54.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
54.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
54.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
53.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
53.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
53.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
53.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
52.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
52.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
51.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
51.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
50.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
50.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
50.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
50.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
49.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
48.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
47.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
47.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
47.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
46.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
46.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
45.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
45.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
45.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
45.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
45.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
44.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
44.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
44.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
44.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
44.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
44.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
43.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
43.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
43.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
43.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
43.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
43.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
43.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
43.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
43.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
42.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
42.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
42.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
41.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
41.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
41.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
41.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
41.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
40.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
40.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
40.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
40.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
39.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
39.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
39.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
39.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
39.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
39.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
39.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
38.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
38.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
37.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
37.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
37.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
36.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
36.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
36.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
35.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
34.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
34.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
33.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
33.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
32.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
32.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
31.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
2.0
777
Tumor
1.5
411
Tumor
1.2
497
Tumor
1.0
743
Tumor
0.9
1031
Tumor
0.9
415
Tumor
0.9
977
Tumor
0.9
527
Tumor
0.8
963
Tumor
0.8
221
Tumor
0.8
351
Tumor
0.8
443
Tumor
0.8
715
Tumor
0.8
695
Tumor
0.8
483
Tumor
0.8
431
Tumor
0.8
271
Tumor
0.8
523
Tumor
0.7
881
Tumor
0.7
481
Tumor
0.7
865
Tumor
0.6
227
Tumor
0.6
515
Tumor
0.6
477
Tumor
0.5
487
Tumor
0.5
553
Tumor
0.5
355
Tumor
0.5
965
Tumor
0.5
327
Tumor
0.5
957
Tumor
0.5
877
Tumor
0.4
473
Tumor
0.4
445
Tumor
0.4
517
Tumor
0.4
493
Tumor
0.4
277
Tumor
0.4
267
Tumor
0.4
545
Tumor
0.4
513
Tumor
0.4
1025
Tumor
0.4
1013
Tumor
0.3
923
Tumor
0.3
721
Tumor
0.3
533
Tumor
0.3
433
Tumor
0.3
123
Tumor
0.3
641
Tumor
0.3
975
Tumor
0.3
135
Tumor
0.3
357
Tumor
0.3
665
Tumor
0.3
471
Tumor
0.3
484
Normal
0.2
647
Tumor
0.2
285
Tumor
0.2
727
Tumor
0.2
488
Normal
0.2
412
Normal
0.2
921
Tumor
0.2
685
Tumor
0.2
498
Normal
0.2
331
Tumor
0.2
951
Tumor
0.2
964
Normal
0.2
447
Tumor
0.1
698
Normal
0.1
171
Tumor
0.1
563
Tumor
0.1
737
Tumor
0.1
981
Tumor
0.1
958
Normal
0.1
943
Tumor
0.1
185
Tumor
0.1
413
Tumor
0.1
478
Normal
0.1
212
Normal
0.1
756
Normal
0.1
451
Tumor
0.1
955
Tumor
0.1
1032
Normal
0.1
746
Normal
0.1
455
Tumor
0.1
538
Normal
0.0
313
Tumor
0.0
635
Tumor
0.0
785
Tumor
0.0
516
Normal
0.0
911
Tumor
0.0
573
Tumor
0.0
546
Normal
0.0
663
Tumor
0.0
297
Tumor
0.0
813
Tumor
0.0
858
Normal
0.0
426
Normal
0.0
482
Normal
0.0
361
Tumor
0.0
882
Normal
0.0
112
Tumor
0.0
363
Tumor
0.0
463
Tumor
0.0
191
Tumor
0.0
494
Normal
0.0
425
Tumor
0.0
1043
Tumor
0.0
462
Normal
0.0
697
Tumor
0.0
966
Normal
0.0
1014
Normal
0.0
423
Tumor
0.0
465
Tumor
0.0
461
Tumor
0.0
534
Normal
0.0
984
Normal
0.0
924
Normal
0.0
954
Normal
0.0
976
Normal
0.0
915
Tumor
-0.1
492
Normal
-0.1
926
Normal
-0.1
422
Normal
-0.1
696
Normal
-0.1
385
Tumor
-0.1
922
Normal
-0.1
1021
Tumor
-0.1
364
Normal
-0.1
514
Normal
-0.1
714
Normal
-0.1
724
Normal
-0.1
937
Tumor
-0.1
878
Normal
-0.1
161
Tumor
-0.1
231
Tumor
-0.1
283
Tumor
-0.1
328
Normal
-0.1
982
Normal
-0.1
571
Tumor
-0.1
713
Tumor
-0.1
823
Tumor
-0.1
814
Normal
-0.1
472
Normal
-0.1
873
Tumor
-0.1
432
Normal
-0.1
435
Tumor
-0.1
535
Tumor
-0.1
261
Tumor
-0.1
778
Normal
-0.1
1046
Normal
-0.1
716
Normal
-0.1
938
Normal
-0.2
448
Normal
-0.2
211
Tumor
-0.2
528
Normal
-0.2
162
Normal
-0.2
738
Normal
-0.2
664
Normal
-0.2
617
Tumor
-0.2
436
Normal
-0.2
526
Normal
-0.2
284
Normal
-0.2
172
Normal
-0.2
1015
Tumor
-0.2
524
Normal
-0.2
978
Normal
-0.2
414
Normal
-0.2
968
Normal
-0.2
1041
Tumor
-0.2
416
Normal
-0.2
356
Normal
-0.2
525
Tumor
-0.2
723
Tumor
-0.2
217
Tumor
-0.2
314
Normal
-0.2
786
Normal
-0.2
393
Tumor
-0.2
666
Normal
-0.2
857
Tumor
-0.2
352
Normal
-0.2
298
Normal
-0.2
883
Tumor
-0.2
228
Normal
-0.2
557
Tumor
-0.2
572
Normal
-0.2
424
Normal
-0.2
755
Tumor
-0.2
558
Normal
-0.2
342
Normal
-0.2
967
Tumor
-0.2
145
Tumor
-0.3
434
Normal
-0.3
742
Normal
-0.3
983
Tumor
-0.3
146
Normal
-0.3
925
Tumor
-0.3
446
Normal
-0.3
141
Tumor
-0.3
148
Normal
-0.3
375
Tumor
-0.3
474
Normal
-0.3
728
Normal
-0.3
394
Normal
-0.3
142
Normal
-0.3
917
Tumor
-0.3
618
Normal
-0.3
866
Normal
-0.3
213
Tumor
-0.3
196
Normal
-0.3
554
Normal
-0.3
744
Normal
-0.3
428
Normal
-0.3
136
Normal
-0.3
864
Normal
-0.3
944
Normal
-0.3
884
Normal
-0.3
365
Tumor
-0.3
353
Tumor
-0.3
863
Tumor
-0.3
113
Tumor
-0.3
332
Normal
-0.3
187
Tumor
-0.3
874
Normal
-0.3
343
Tumor
-0.3
222
Normal
-0.3
427
Tumor
-0.3
468
Normal
-0.3
672
Normal
-0.3
912
Normal
-0.3
147
Tumor
-0.3
636
Normal
-0.3
223
Tumor
-0.3
916
Normal
-0.3
686
Normal
-0.3
568
Normal
-0.3
214
Normal
-0.4
722
Normal
-0.4
132
Normal
-0.4
662
Normal
-0.4
648
Normal
-0.4
824
Normal
-0.4
536
Normal
-0.4
188
Normal
-0.4
466
Normal
-0.4
956
Normal
-0.4
1022
Normal
-0.4
1045
Tumor
-0.4
952
Normal
-0.4
1044
Normal
-0.4
564
Normal
-0.4
137
Tumor
-0.4
358
Normal
-0.4
186
Normal
-0.4
464
Normal
-0.4
444
Normal
-0.4
518
Normal
-0.4
456
Normal
-0.4
616
Normal
-0.4
138
Normal
-0.4
218
Normal
-0.4
386
Normal
-0.4
311
Tumor
-0.4
344
Normal
-0.4
741
Tumor
-0.4
114
Normal
-0.4
286
Normal
-0.4
192
Normal
-0.4
1026
Normal
-0.4
1028
Normal
-0.4
918
Normal
-0.4
628
Normal
-0.4
396
Normal
-0.4
383
Tumor
-0.5
1027
Tumor
-0.5
491
Tumor
-0.5
818
Normal
-0.5
278
Normal
-0.5
817
Tumor
-0.5
452
Normal
-0.5
341
Tumor
-0.5
268
Normal
-0.5
224
Normal
-0.5
376
Normal
-0.5
312
Normal
-0.5
574
Normal
-0.5
467
Tumor
-0.5
537
Tumor
-0.5
627
Tumor
-0.5
615
Tumor
-0.5
388
Normal
-0.5
867
Tumor
-0.5
258
Normal
-0.5
642
Normal
-0.5
362
Normal
-0.5
861
Tumor
-0.5
354
Normal
-0.5
421
Tumor
-0.5
868
Normal
-0.6
913
Tumor
-0.6
127
Tumor
-0.6
1016
Normal
-0.6
111
Normal
-0.6
671
Tumor
-0.6
953
Tumor
-0.6
262
Normal
-0.6
745
Tumor
-0.6
1042
Normal
-0.6
272
Normal
-0.6
125
Tumor
-0.6
384
Normal
-0.6
395
Tumor
-0.7
661
Tumor
-0.7
368
Normal
-0.7
852
Normal
-0.7
862
Normal
-0.7
232
Normal
-0.7
567
Tumor
-0.7
126
Normal
-0.7
257
Tumor
-0.7
816
Normal
-0.7
367
Tumor
-0.7
392
Normal
-0.8
128
Normal
-0.8
366
Normal
-0.8
195
Tumor
-0.8
914
Normal
-0.8
124
Normal
-0.8
851
Tumor
-0.9
387
Tumor
-0.9
391
Tumor
-1.3
815
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
