MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.4 nTPM
HPA Brain:36.1 nTPM
GTEx:38.4 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:42.6 nTPM
Mouse:40.0 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.3
2586 Male, age 75, left hemisphere 40.8
2666 Male, age 74, left hemisphere 38.7
1827 Male, age 72, unknown 35.0
1870 Female, age 42, unknown 33.8
2411 Female, age 72, unknown 33.2
1833 Male, age 53, unknown 30.9
2219 Male, age 76, both hemispheres 30.2
2828 Female, age 72, unknown 27.2
1830 Male, age 51, unknown 26.7
2019 Male, age 18, unknown 26.6
Dorsal raphe nucleus
nTPM: 29.8
2298 Female, age 72, unknown 33.7
1828 Male, age 53, unknown 32.8
2047 Male, age 72, unknown 31.2
2750 Male, age 76, both hemispheres 26.8
2016 Female, age 72, unknown 24.5
Inferior colliculus
nTPM: 30.6
2849 Male, age 72, unknown 35.7
2097 Female, age 72, unknown 29.7
1848 Female, age 42, unknown 28.6
1890 Male, age 53, unknown 28.6
Median raphe nucleus
nTPM: 36.1
2220 Male, age 76, midline 36.1
Periaquaductal grey, anterior
nTPM: 32.4
1795 Male, age 51, unknown 35.4
1947 Male, age 18, unknown 32.8
2502 Female, age 75, unknown 28.9
Periaquaductal grey, dorsal
nTPM: 26.7
2464 Female, age 72, unknown 30.2
1840 Male, age 53, unknown 29.1
2850 Male, age 76, both hemispheres 24.8
1831 Male, age 72, unknown 22.7
Periaquaductal grey, lateral
nTPM: 22.2
2053 Male, age 18, unknown 25.8
2272 Male, age 74, both hemispheres 20.8
2140 Male, age 76, both hemispheres 19.9
Pretectal area
nTPM: 29.3
1816 Male, age 51, unknown 35.9
2007 Male, age 72, unknown 34.6
1944 Female, age 72, unknown 33.3
1817 Female, age 42, unknown 32.5
2407 Male, age 75, both hemispheres 31.9
2825 Male, age 18, unknown 30.0
1815 Male, age 53, unknown 29.7
2224 Female, age 72, unknown 28.1
2316 Male, age 76, right hemisphere 25.1
2667 Female, age 75, unknown 23.3
2273 Male, age 74, both hemispheres 17.9
Red nucleus
nTPM: 29.0
2584 Male, age 75, left hemisphere 39.7
2725 Female, age 75, unknown 39.5
2588 Male, age 74, left hemisphere 38.8
1821 Female, age 72, unknown 28.7
2503 Female, age 72, unknown 28.3
2227 Male, age 72, unknown 27.9
2785 Male, age 18, unknown 26.8
2769 Male, age 72, unknown 26.7
1954 Female, age 42, unknown 25.6
1904 Male, age 53, unknown 23.6
1865 Male, age 51, unknown 23.5
2823 Male, age 76, right hemisphere 19.4
Substantia nigra
nTPM: 33.9
1916 Female, age 42, unknown 48.9
1851 Male, age 51, unknown 38.1
2241 Male, age 72, unknown 36.5
1941 Male, age 53, unknown 36.1
2583 Male, age 75, right hemisphere 32.3
2699 Male, age 18, unknown 31.8
1889 Female, age 72, unknown 31.4
2590 Female, age 75, unknown 29.5
2665 Male, age 74, both hemispheres 28.1
2409 Female, age 72, unknown 25.9
Superior colliculus
nTPM: 28.9
2664 Male, age 75, both hemispheres 37.9
2668 Female, age 75, unknown 31.9
1796 Male, age 53, unknown 31.6
2087 Female, age 72, unknown 30.9
2261 Male, age 18, unknown 30.9
1895 Male, age 76, right hemisphere 28.4
1839 Male, age 51, unknown 27.7
2587 Male, age 74, left hemisphere 26.4
1913 Female, age 42, unknown 23.3
1995 Male, age 72, unknown 20.2
Ventral tegmental area
nTPM: 32.1
1915 Female, age 42, unknown 35.7
2410 Female, age 72, unknown 35.2
2218 Male, age 76, both hemispheres 34.1
1942 Male, age 51, unknown 30.4
2223 Female, age 72, unknown 29.0
2021 Male, age 53, unknown 28.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.4
Samples: 139

Max nTPM: 77.8
Min nTPM: 20.6
Std nTPM: 9.9
Median nTPM: 37.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 69.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 64.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 62.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 56.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 56.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 53.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 53.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 52.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 52.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.9
FF:10158-103A5 76 years, female 19.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 42.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.5
Samples: 4

Max nTPM: 51.8
Min nTPM: 29.8
Sample A Female 48.5
Sample B Female 32.0
Sample C Male 51.8
Sample D Male 29.8
Midbrain
nTPM: 40.2
Samples: 4

Max nTPM: 46.7
Min nTPM: 31.6
Sample A Female 31.6
Sample B Female 42.4
Sample C Male 40.2
Sample D Male 46.7
Periaqueductal gray
nTPM: 42.6
Samples: 3

Max nTPM: 49.5
Min nTPM: 36.2
Sample B Female 42.1
Sample C Male 49.5
Sample D Male 36.2
Superior colliculi
nTPM: 40.1
Samples: 4

Max nTPM: 48.5
Min nTPM: 26.4
Sample A Female 48.5
Sample B Female 26.4
Sample C Male 40.5
Sample D Male 45.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 40.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.1
Samples: 4

Max nTPM: 42.2
Min nTPM: 37.5
Sample A Male 37.5
Sample B Male 39.1
Sample C Female 42.2
Sample D Female 41.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
68321668 Antisense, RP_041130_02_H04, Mouse strain C57BL/6J (56 days, male) 3.9
74821691 Antisense, RP_060321_02_C02, Mouse strain C57BL/6J (56 days, male) 3.8

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