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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COASY is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
116.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
95.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
91.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
89.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
88.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
87.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
86.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
84.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
83.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
83.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
80.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
78.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
74.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
73.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
72.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
72.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
71.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
70.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
69.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
69.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
68.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
67.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
67.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
65.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
65.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
65.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
64.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
64.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
64.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
63.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
63.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
62.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
62.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
62.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
61.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
60.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
59.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
59.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
58.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
57.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
57.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
57.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
56.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
56.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
55.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
55.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
55.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
55.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
55.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
55.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
55.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
55.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
54.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
54.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
54.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
53.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
53.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
53.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
53.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
53.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
53.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
53.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
52.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
52.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
51.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
50.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
50.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
50.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
49.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
49.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
49.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
48.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
47.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
47.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
46.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
46.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
45.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
45.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
45.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
45.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
45.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
45.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
45.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
44.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
44.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
44.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
44.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
44.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
44.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
44.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
43.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
42.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
42.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
41.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
41.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
41.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
41.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
41.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
41.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
41.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
41.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
41.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
41.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
40.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
40.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
40.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
40.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
39.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
39.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
39.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
39.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
39.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
39.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
39.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
38.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
38.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
38.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
38.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
38.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
37.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
37.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
37.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
36.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
35.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
34.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
34.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
33.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
33.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
33.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
33.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
32.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
31.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
31.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
30.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
30.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
30.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
28.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
27.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
24.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COASY is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.2
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
130.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
128.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
119.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
103.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
96.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
83.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
82.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
82.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
80.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
80.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
79.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
79.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
77.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
71.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
70.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
70.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
67.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
66.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
65.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
65.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
64.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
63.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
63.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
62.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
62.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
61.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
61.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
61.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
60.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
60.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
58.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
58.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
58.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
58.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
58.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
57.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
57.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
56.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
56.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
56.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
55.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
54.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
54.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
54.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
53.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
53.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
52.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
52.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
52.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
50.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
49.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
49.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
49.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
48.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
47.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
47.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
47.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
46.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
46.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
46.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
46.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
46.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
45.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
45.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
44.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
44.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
44.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
43.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
42.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
42.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
42.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
41.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
41.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
41.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
40.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
40.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
40.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
40.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
40.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
39.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
39.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
39.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
39.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
38.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
37.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
37.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
37.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
35.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
35.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
34.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
34.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
34.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
34.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
32.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
32.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
29.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
27.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.3
1041
Tumor
1.2
741
Tumor
1.0
1027
Tumor
0.9
695
Tumor
0.9
981
Tumor
0.9
257
Tumor
0.8
341
Tumor
0.8
127
Tumor
0.7
465
Tumor
0.7
867
Tumor
0.7
172
Normal
0.6
227
Tumor
0.6
314
Normal
0.5
278
Normal
0.5
162
Normal
0.5
436
Normal
0.5
128
Normal
0.5
648
Normal
0.5
298
Normal
0.5
618
Normal
0.5
361
Tumor
0.5
642
Normal
0.5
452
Normal
0.5
222
Normal
0.5
132
Normal
0.5
435
Tumor
0.5
911
Tumor
0.5
332
Normal
0.5
636
Normal
0.4
861
Tumor
0.4
196
Normal
0.4
147
Tumor
0.4
411
Tumor
0.4
564
Normal
0.4
568
Normal
0.4
432
Normal
0.4
366
Normal
0.4
186
Normal
0.4
862
Normal
0.4
388
Normal
0.4
727
Tumor
0.4
786
Normal
0.4
111
Normal
0.4
446
Normal
0.4
464
Normal
0.4
394
Normal
0.4
342
Normal
0.4
376
Normal
0.4
353
Tumor
0.4
112
Tumor
0.4
616
Normal
0.4
148
Normal
0.4
358
Normal
0.4
466
Normal
0.3
423
Tumor
0.3
824
Normal
0.3
666
Normal
0.3
882
Normal
0.3
258
Normal
0.3
392
Normal
0.3
912
Normal
0.3
664
Normal
0.3
286
Normal
0.3
572
Normal
0.3
428
Normal
0.3
368
Normal
0.3
218
Normal
0.3
171
Tumor
0.3
136
Normal
0.3
354
Normal
0.3
272
Normal
0.3
714
Normal
0.3
884
Normal
0.3
462
Normal
0.3
114
Normal
0.3
356
Normal
0.3
414
Normal
0.3
362
Normal
0.3
662
Normal
0.3
818
Normal
0.3
365
Tumor
0.3
858
Normal
0.3
138
Normal
0.3
312
Normal
0.3
214
Normal
0.3
957
Tumor
0.3
914
Normal
0.3
424
Normal
0.3
742
Normal
0.3
738
Normal
0.3
488
Normal
0.3
866
Normal
0.3
232
Normal
0.2
396
Normal
0.2
746
Normal
0.2
816
Normal
0.2
573
Tumor
0.2
756
Normal
0.2
533
Tumor
0.2
868
Normal
0.2
352
Normal
0.2
878
Normal
0.2
617
Tumor
0.2
1046
Normal
0.2
558
Normal
0.2
1026
Normal
0.2
456
Normal
0.2
744
Normal
0.2
574
Normal
0.2
635
Tumor
0.2
864
Normal
0.2
628
Normal
0.2
526
Normal
0.2
228
Normal
0.2
124
Normal
0.2
426
Normal
0.2
722
Normal
0.2
517
Tumor
0.2
422
Normal
0.2
451
Tumor
0.2
964
Normal
0.2
142
Normal
0.2
1022
Normal
0.2
696
Normal
0.2
518
Normal
0.2
367
Tumor
0.2
413
Tumor
0.2
915
Tumor
0.2
262
Normal
0.2
944
Normal
0.2
328
Normal
0.2
863
Tumor
0.2
468
Normal
0.2
952
Normal
0.1
231
Tumor
0.1
938
Normal
0.1
284
Normal
0.1
663
Tumor
0.1
386
Normal
0.1
1032
Normal
0.1
188
Normal
0.1
1042
Normal
0.1
268
Normal
0.1
513
Tumor
0.1
126
Normal
0.1
528
Normal
0.1
448
Normal
0.1
728
Normal
0.1
778
Normal
0.1
412
Normal
0.1
723
Tumor
0.1
976
Normal
0.1
463
Tumor
0.1
416
Normal
0.1
212
Normal
0.1
743
Tumor
0.1
277
Tumor
0.1
434
Normal
0.1
384
Normal
0.1
672
Normal
0.1
484
Normal
0.1
563
Tumor
0.1
344
Normal
0.1
514
Normal
0.1
1015
Tumor
0.1
967
Tumor
0.1
1016
Normal
0.1
534
Normal
0.1
874
Normal
0.1
968
Normal
0.1
698
Normal
0.1
955
Tumor
0.1
922
Normal
0.1
978
Normal
0.1
977
Tumor
0.1
482
Normal
0.0
516
Normal
0.0
494
Normal
0.0
261
Tumor
0.0
937
Tumor
0.0
716
Normal
0.0
125
Tumor
0.0
686
Normal
0.0
852
Normal
0.0
953
Tumor
0.0
444
Normal
0.0
924
Normal
0.0
641
Tumor
0.0
364
Normal
0.0
515
Tumor
0.0
713
Tumor
0.0
615
Tumor
0.0
982
Normal
0.0
956
Normal
0.0
1028
Normal
0.0
141
Tumor
0.0
497
Tumor
0.0
1044
Normal
0.0
571
Tumor
0.0
267
Tumor
0.0
224
Normal
0.0
445
Tumor
0.0
954
Normal
0.0
1043
Tumor
0.0
137
Tumor
0.0
546
Normal
0.0
958
Normal
0.0
433
Tumor
-0.1
123
Tumor
-0.1
217
Tumor
-0.1
357
Tumor
-0.1
213
Tumor
-0.1
477
Tumor
-0.1
113
Tumor
-0.1
187
Tumor
-0.1
443
Tumor
-0.1
474
Normal
-0.1
472
Normal
-0.1
146
Normal
-0.1
192
Normal
-0.1
918
Normal
-0.1
1014
Normal
-0.1
498
Normal
-0.1
877
Tumor
-0.1
925
Tumor
-0.1
984
Normal
-0.1
966
Normal
-0.1
191
Tumor
-0.1
393
Tumor
-0.1
427
Tumor
-0.2
425
Tumor
-0.2
161
Tumor
-0.2
221
Tumor
-0.2
383
Tumor
-0.2
567
Tumor
-0.2
554
Normal
-0.2
647
Tumor
-0.2
271
Tumor
-0.2
755
Tumor
-0.2
1045
Tumor
-0.2
524
Normal
-0.2
327
Tumor
-0.2
461
Tumor
-0.2
721
Tumor
-0.2
557
Tumor
-0.2
777
Tumor
-0.2
395
Tumor
-0.2
185
Tumor
-0.2
926
Normal
-0.3
815
Tumor
-0.3
492
Normal
-0.3
431
Tumor
-0.3
421
Tumor
-0.3
951
Tumor
-0.3
715
Tumor
-0.3
1013
Tumor
-0.3
913
Tumor
-0.3
685
Tumor
-0.3
391
Tumor
-0.3
873
Tumor
-0.3
313
Tumor
-0.3
665
Tumor
-0.3
538
Normal
-0.3
785
Tumor
-0.3
865
Tumor
-0.3
481
Tumor
-0.3
851
Tumor
-0.4
537
Tumor
-0.4
491
Tumor
-0.4
351
Tumor
-0.4
297
Tumor
-0.4
823
Tumor
-0.4
223
Tumor
-0.4
737
Tumor
-0.4
363
Tumor
-0.4
963
Tumor
-0.4
916
Normal
-0.4
285
Tumor
-0.4
487
Tumor
-0.4
145
Tumor
-0.4
921
Tumor
-0.4
483
Tumor
-0.5
131
Tumor
-0.5
478
Normal
-0.5
195
Tumor
-0.5
671
Tumor
-0.5
1025
Tumor
-0.5
1031
Tumor
-0.5
857
Tumor
-0.5
661
Tumor
-0.5
525
Tumor
-0.5
745
Tumor
-0.5
883
Tumor
-0.5
814
Normal
-0.5
311
Tumor
-0.6
536
Normal
-0.6
493
Tumor
-0.6
135
Tumor
-0.6
523
Tumor
-0.6
943
Tumor
-0.6
283
Tumor
-0.6
343
Tumor
-0.6
385
Tumor
-0.6
415
Tumor
-0.6
724
Normal
-0.6
975
Tumor
-0.6
387
Tumor
-0.6
355
Tumor
-0.6
553
Tumor
-0.6
375
Tumor
-0.6
923
Tumor
-0.6
817
Tumor
-0.6
467
Tumor
-0.6
1021
Tumor
-0.6
813
Tumor
-0.7
331
Tumor
-0.7
447
Tumor
-0.7
983
Tumor
-0.7
473
Tumor
-0.7
697
Tumor
-0.7
527
Tumor
-0.7
965
Tumor
-0.7
471
Tumor
-0.8
455
Tumor
-0.8
881
Tumor
-0.8
917
Tumor
-0.9
545
Tumor
-0.9
211
Tumor
-0.9
535
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.