MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.5 nTPM
HPA Brain:23.0 nTPM
GTEx:26.5 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:28.7 nTPM
Mouse:12.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.6
2019 Male, age 18, unknown 24.5
2828 Female, age 72, unknown 24.3
2586 Male, age 75, left hemisphere 23.7
1870 Female, age 42, unknown 22.9
2666 Male, age 74, left hemisphere 19.7
1833 Male, age 53, unknown 19.3
1827 Male, age 72, unknown 19.2
1830 Male, age 51, unknown 19.2
2411 Female, age 72, unknown 19.2
2219 Male, age 76, both hemispheres 14.3
Dorsal raphe nucleus
nTPM: 21.5
2016 Female, age 72, unknown 24.1
2298 Female, age 72, unknown 23.6
2750 Male, age 76, both hemispheres 22.3
1828 Male, age 53, unknown 21.8
2047 Male, age 72, unknown 15.8
Inferior colliculus
nTPM: 19.0
1848 Female, age 42, unknown 20.1
2097 Female, age 72, unknown 19.5
1890 Male, age 53, unknown 18.2
2849 Male, age 72, unknown 18.2
Median raphe nucleus
nTPM: 15.9
2220 Male, age 76, midline 15.9
Periaquaductal grey, anterior
nTPM: 21.1
2502 Female, age 75, unknown 24.6
1795 Male, age 51, unknown 21.5
1947 Male, age 18, unknown 17.2
Periaquaductal grey, dorsal
nTPM: 20.2
2850 Male, age 76, both hemispheres 23.9
1831 Male, age 72, unknown 20.2
2464 Female, age 72, unknown 20.0
1840 Male, age 53, unknown 16.6
Periaquaductal grey, lateral
nTPM: 21.7
2140 Male, age 76, both hemispheres 23.9
2272 Male, age 74, both hemispheres 22.3
2053 Male, age 18, unknown 19.0
Pretectal area
nTPM: 19.4
2273 Male, age 74, both hemispheres 26.7
2224 Female, age 72, unknown 20.6
2316 Male, age 76, right hemisphere 20.5
1817 Female, age 42, unknown 19.7
2667 Female, age 75, unknown 19.3
2007 Male, age 72, unknown 18.9
1815 Male, age 53, unknown 18.7
1944 Female, age 72, unknown 18.5
2825 Male, age 18, unknown 17.8
2407 Male, age 75, both hemispheres 17.5
1816 Male, age 51, unknown 15.8
Red nucleus
nTPM: 23.0
2503 Female, age 72, unknown 27.4
1904 Male, age 53, unknown 26.2
2227 Male, age 72, unknown 26.0
2769 Male, age 72, unknown 25.7
1865 Male, age 51, unknown 24.8
2785 Male, age 18, unknown 24.7
1954 Female, age 42, unknown 23.7
1821 Female, age 72, unknown 22.5
2823 Male, age 76, right hemisphere 21.2
2588 Male, age 74, left hemisphere 19.7
2725 Female, age 75, unknown 19.1
2584 Male, age 75, left hemisphere 15.6
Substantia nigra
nTPM: 17.6
2699 Male, age 18, unknown 23.3
1851 Male, age 51, unknown 21.8
1941 Male, age 53, unknown 19.9
1916 Female, age 42, unknown 19.5
2583 Male, age 75, right hemisphere 17.4
2590 Female, age 75, unknown 16.9
1889 Female, age 72, unknown 16.4
2665 Male, age 74, both hemispheres 15.6
2241 Male, age 72, unknown 15.1
2409 Female, age 72, unknown 9.9
Superior colliculus
nTPM: 21.2
1995 Male, age 72, unknown 27.8
1913 Female, age 42, unknown 26.0
2587 Male, age 74, left hemisphere 22.5
2664 Male, age 75, both hemispheres 21.9
2668 Female, age 75, unknown 21.6
1796 Male, age 53, unknown 20.0
1839 Male, age 51, unknown 19.3
2087 Female, age 72, unknown 18.8
2261 Male, age 18, unknown 17.8
1895 Male, age 76, right hemisphere 16.5
Ventral tegmental area
nTPM: 19.9
2223 Female, age 72, unknown 22.3
2021 Male, age 53, unknown 21.1
1915 Female, age 42, unknown 20.3
1942 Male, age 51, unknown 19.6
2218 Male, age 76, both hemispheres 18.6
2410 Female, age 72, unknown 17.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.5
Samples: 139

Max nTPM: 56.7
Min nTPM: 8.6
Std nTPM: 8.3
Median nTPM: 25.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 56.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 50.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 47.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 44.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 41.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 41.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 41.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 39.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 38.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 38.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 37.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.0
FF:10158-103A5 76 years, female 35.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.7
Samples: 4

Max nTPM: 32.1
Min nTPM: 24.7
Sample A Female 26.2
Sample B Female 32.1
Sample C Male 24.7
Sample D Male 27.6
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 43.8
Min nTPM: 15.4
Sample A Female 43.8
Sample B Female 23.0
Sample C Male 20.3
Sample D Male 15.4
Periaqueductal gray
nTPM: 25.4
Samples: 3

Max nTPM: 28.5
Min nTPM: 22.6
Sample B Female 22.6
Sample C Male 28.5
Sample D Male 25.2
Superior colliculi
nTPM: 28.7
Samples: 4

Max nTPM: 36.5
Min nTPM: 22.9
Sample A Female 29.4
Sample B Female 36.5
Sample C Male 22.9
Sample D Male 25.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 15.2
Min nTPM: 9.8
Sample A Male 14.8
Sample B Male 9.8
Sample C Female 12.0
Sample D Female 15.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68301819 Antisense, RP_041130_01_H05, Mouse strain C57BL/6J (56 days, male) 0.3

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